View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18878_low_14 (Length: 327)
Name: NF18878_low_14
Description: NF18878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18878_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 35875814 - 35876022
Alignment:
| Q |
1 |
ccacttctgtagattggagggaaaaaggagctgtgactgaagttagggaccaaggagattgtcgtaagattttattaattatatcattctttattactaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35875814 |
ccacttctgtagattggagggaaaaaggagctgtgactgaagttagggaccaaggagattgtcgtaagattttattaattatatcattctttattactaa |
35875913 |
T |
|
| Q |
101 |
ttttcatttttgcatttcatctcatctatgtttatgaatttaataattttatacccttagacagtataggaatatagattttgaagttattttagatgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35875914 |
ttttcatttttgcatttcatctcatctatgtttatgaatttaataattttatacccttagacagtataggaatatagattttgaagttattttagatgtt |
35876013 |
T |
|
| Q |
201 |
attatgatg |
209 |
Q |
| |
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||||||||| |
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| T |
35876014 |
attatgatg |
35876022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 274 - 318
Target Start/End: Original strand, 35876087 - 35876131
Alignment:
| Q |
274 |
tgtgtttatttatgcaagattagctaataatccatatatattctt |
318 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| ||||| |
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|
| T |
35876087 |
tgtgtttatttatgaaagattagctaataatccatatattttctt |
35876131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 24450015 - 24450223
Alignment:
| Q |
1 |
ccacttctgtagattggagggaaaaaggagctgtgactgaagttagggaccaaggagattgtcgtaagattttattaattatatcattctttattactaa |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24450015 |
ccacttctgtagattggagggaaaaaggagctgtgactgaagttagggaccaaggagattgtcgtaagattttattaattatatcattctttattactaa |
24450114 |
T |
|
| Q |
101 |
ttttcatttttgcatttcatctcatctatgtttatgaatttaataattttatacccttagacagtataggaatatagattttgaagttattttagatgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24450115 |
ttttcatttttgcatttcatctcatctatgtttatgaatttaataattttatacccttagacagtataggaatatagattttgaagttattttagatgtt |
24450214 |
T |
|
| Q |
201 |
attatgatg |
209 |
Q |
| |
|
||||||||| |
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|
| T |
24450215 |
attatgatg |
24450223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 274 - 318
Target Start/End: Original strand, 24450288 - 24450332
Alignment:
| Q |
274 |
tgtgtttatttatgcaagattagctaataatccatatatattctt |
318 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| ||||| |
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|
| T |
24450288 |
tgtgtttatttatgaaagattagctaataatccatatattttctt |
24450332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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