View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18878_low_19 (Length: 238)

Name: NF18878_low_19
Description: NF18878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18878_low_19
NF18878_low_19
[»] chr1 (1 HSPs)
chr1 (17-238)||(43541338-43541559)
[»] chr7 (4 HSPs)
chr7 (17-98)||(14069287-14069368)
chr7 (17-98)||(14379315-14379396)
chr7 (17-97)||(11790893-11790973)
chr7 (17-97)||(25616714-25616794)
[»] chr4 (3 HSPs)
chr4 (17-97)||(7103625-7103705)
chr4 (17-97)||(40756744-40756824)
chr4 (17-96)||(9742213-9742292)
[»] chr2 (2 HSPs)
chr2 (17-97)||(26024482-26024562)
chr2 (17-97)||(17538655-17538735)
[»] chr8 (4 HSPs)
chr8 (17-97)||(19237384-19237464)
chr8 (17-97)||(19310568-19310648)
chr8 (20-97)||(9492923-9493000)
chr8 (17-72)||(16436060-16436115)
[»] chr3 (2 HSPs)
chr3 (17-93)||(9491227-9491303)
chr3 (17-92)||(19625186-19625261)
[»] chr5 (1 HSPs)
chr5 (17-97)||(27214381-27214461)


Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 43541559 - 43541338
Alignment:
Q  17 acatcagatattggcaaaatgggaccttcacttagtgtctccatcaacatcgtacttgacctcttaaaattcacaatagattaccaaacaaaagattgaa 116  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  43541559 acatcagatattggcaaaatgggacctccacttagtgtctccatcaacaccgtacttgacctcttaaaattcacaatagattaccaaacaaaagattaaa 43541460  T
Q  117 ttaaggagattgaaggaactcgttagaagagactctcaaataagtatgtcataatagatgattagcagcacaaaattgacaaaataattgagaattcaat 216  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  43541459 ttaaggagattgaaggaactcgttagaagagactctcaaataattatgtcatgatagatgattagtagcacaaaattgacaaaataattgagaattcaat 43541360  T
Q  217 gttagaactattataatgcact 238  Q
    ||||||||||||||||||||||    
T  43541359 gttagaactattataatgcact 43541338  T

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Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 14069287 - 14069368
Alignment:
Q  17 acatcagatattggcaaaatgggaccttcacttagtgtctccatcaacatcgtacttgacctcttaaaattcacaatagatt 98  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||  ||||||||||||||||||||||    
T  14069287 acatcagatattggcaaaattggacctccacttagtgtctccatcaacaccgtacttgcactcttaaaattcacaatagatt 14069368  T

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Target: chr7; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 14379315 - 14379396
Alignment:
Q  17 acatcagatattggcaaaatgggaccttcacttagtgtctccatcaacatcgtacttgacctcttaaaattcacaatagatt 98  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||  ||||||||||||||||||||||    
T  14379315 acatcagatattggcaaaattggacctccacttagtgtctccatcaacaccgtacttgcactcttaaaattcacaatagatt 14379396  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 11790893 - 11790973
Alignment:
Q  17 acatcagatattggcaaaatgggaccttcacttagtgtctccatcaacatcgtacttgacctcttaaaattcacaatagat 97  Q
    |||||||||||||||||||| |||||| ||||||||||||||| ||||| |||||| |  |||||||||||||||||||||    
T  11790893 acatcagatattggcaaaattggacctccacttagtgtctccaccaacaccgtactagcactcttaaaattcacaatagat 11790973  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 25616714 - 25616794
Alignment:
Q  17 acatcagatattggcaaaatgggaccttcacttagtgtctccatcaacatcgtacttgacctcttaaaattcacaatagat 97  Q
    |||||||||||||||||||| | |||| ||||||||||||||| ||||| | |||  |  ||||||||||| |||||||||    
T  25616714 acatcagatattggcaaaattgaacctccacttagtgtctccaccaacaccataccagcactcttaaaattgacaatagat 25616794  T

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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 7103705 - 7103625
Alignment:
Q  17 acatcagatattggcaaaatgggaccttcacttagtgtctccatcaacatcgtacttgacctcttaaaattcacaatagat 97  Q
    |||||||| ||||||||||| |||||| |||||||||| |||| |||||||||||| |  |||||||||||| ||||||||    
T  7103705 acatcagaaattggcaaaattggacctccacttagtgtatccaccaacatcgtactagcactcttaaaattcccaatagat 7103625  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 40756744 - 40756824
Alignment:
Q  17 acatcagatattggcaaaatgggaccttcacttagtgtctccatcaacatcgtacttgacctcttaaaattcacaatagat 97  Q
    |||| ||||||||||||||| |||||||||||||||||||||| ||||| |||||| |  ||||||||| || ||||||||    
T  40756744 acataagatattggcaaaatcggaccttcacttagtgtctccaccaacaccgtactagcactcttaaaactcccaatagat 40756824  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 9742213 - 9742292
Alignment:
Q  17 acatcagatattggcaaaatgggaccttcacttagtgtctccatcaacatcgtacttgacctcttaaaattcacaataga 96  Q
    ||||||||||||| |||||| |||||| ||||||||||||| ||||   | ||||| |  ||||||||||||||||||||    
T  9742213 acatcagatattgacaaaattggacctccacttagtgtctctatcatggttgtactagcactcttaaaattcacaataga 9742292  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 26024562 - 26024482
Alignment:
Q  17 acatcagatattggcaaaatgggaccttcacttagtgtctccatcaacatcgtacttgacctcttaaaattcacaatagat 97  Q
    |||| ||||||||||||||  |||||| |||||||||| |||||||||| |||||||   ||||||||||||| |||||||    
T  26024562 acattagatattggcaaaactggacctccacttagtgtttccatcaacaccgtacttacactcttaaaattcataatagat 26024482  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 17538735 - 17538655
Alignment:
Q  17 acatcagatattggcaaaatgggaccttcacttagtgtctccatcaacatcgtacttgacctcttaaaattcacaatagat 97  Q
    ||||||||||||  ||||||  ||||| ||||||||||||||| ||||| ||||||    ||||| |||||||||||||||    
T  17538735 acatcagatattaacaaaatttgacctccacttagtgtctccaccaacaccgtactaacactcttgaaattcacaatagat 17538655  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 19237464 - 19237384
Alignment:
Q  17 acatcagatattggcaaaatgggaccttcacttagtgtctccatcaacatcgtacttgacctcttaaaattcacaatagat 97  Q
    |||||||||||||||||||| | |||| |||||| |||||||| ||||| |||||| |  |||||||||||  ||||||||    
T  19237464 acatcagatattggcaaaattgaacctccacttactgtctccaccaacaccgtactagcactcttaaaatttccaatagat 19237384  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 19310648 - 19310568
Alignment:
Q  17 acatcagatattggcaaaatgggaccttcacttagtgtctccatcaacatcgtacttgacctcttaaaattcacaatagat 97  Q
    |||||||||||||||||||| | |||| |||||| |||||||| ||||| |||||| |  |||||||||||  ||||||||    
T  19310648 acatcagatattggcaaaattgaacctccacttactgtctccaccaacaccgtactagcactcttaaaatttccaatagat 19310568  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 9492923 - 9493000
Alignment:
Q  20 tcagatattggcaaaatgggaccttcacttagtgtctccatcaacatcgtacttgacctcttaaaattcacaatagat 97  Q
    ||||||||||||||||| ||||||  |||||| ||||||| |||||| ||||  |  ||||||||||| |||||||||    
T  9492923 tcagatattggcaaaattggacctctacttagcgtctccaccaacattgtaccagcactcttaaaatttacaatagat 9493000  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 16436060 - 16436115
Alignment:
Q  17 acatcagatattggcaaaatgggaccttcacttagtgtctccatcaacatcgtact 72  Q
    |||||| ||||||||||||| |||||| |||| |||||||||| ||||| ||||||    
T  16436060 acatcaaatattggcaaaattggacctccactcagtgtctccaccaacaccgtact 16436115  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 9491227 - 9491303
Alignment:
Q  17 acatcagatattggcaaaatgggaccttcacttagtgtctccatcaacatcgtacttgacctcttaaaattcacaat 93  Q
    |||| |||| |||||||||| |||||| ||||||||||||||| ||||| | |||| |  |||||||||||||||||    
T  9491227 acataagatgttggcaaaattggacctccacttagtgtctccaccaacaccatactagcactcttaaaattcacaat 9491303  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 19625186 - 19625261
Alignment:
Q  17 acatcagatattggcaaaatgggaccttcacttagtgtctccatcaacatcgtacttgac-ctcttaaaattcacaa 92  Q
    |||||||||||||||||| |  ||||| ||||||||||||||| |||||| ||| ||||| ||||| ||||||||||    
T  19625186 acatcagatattggcaaacttagacctccacttagtgtctccaacaacattgta-ttgacactcttgaaattcacaa 19625261  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 27214381 - 27214461
Alignment:
Q  17 acatcagatattggcaaaatgggaccttcacttagtgtctccatcaacatcgtacttgacctcttaaaattcacaatagat 97  Q
    ||||||||||   ||||||| |||||| ||||||||| ||||| |||||  ||| | |  |||||||||||||||||||||    
T  27214381 acatcagatacccgcaaaattggacctccacttagtgcctccaacaacactgtattcgcactcttaaaattcacaatagat 27214461  T

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