View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18878_low_2 (Length: 603)
Name: NF18878_low_2
Description: NF18878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18878_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 510; Significance: 0; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 37 - 586
Target Start/End: Complemental strand, 47947319 - 47946772
Alignment:
| Q |
37 |
tatatgttatggttcaggttaatccaaagttgtatggtgaccacaactcccgattgtttgccgcttggactgtaagttcctatttattgaaagctataat |
136 |
Q |
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| T |
47947319 |
tatatgttatggtttaggttaatccaaagttgtatggtgaccacaactcccgattgtttgccgcttggactataagttcctatttattgaaagcta--at |
47947222 |
T |
|
| Q |
137 |
cttatagtagttgnnnnnnnataaccacaaatccatatattgattgcggtgcagcaagattcataccatacaacaggttgcttcgatcttacttgccaag |
236 |
Q |
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| T |
47947221 |
cttatagtagttgtttttttataaccacaaatccatatattgattgcggtgcagcaagattcataccatacaacaggttgcttcgatcttacttgccaag |
47947122 |
T |
|
| Q |
237 |
gatttgtgcaaatagcctcagagatagcacttggttctaccgtaggaccttattcatctcagtttaaccaacaatatgaaatcaacgttggaatattttg |
336 |
Q |
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| T |
47947121 |
gatttgtgcaaatagcctcagagatagcacttggttctaccgtaggaccttattcatctcagtttaaccaacaatatgaaatcaacgttggaatattttg |
47947022 |
T |
|
| Q |
337 |
ggtaataattaataacatgtgtttttgtagtgtataaaagaactattaattaatttactaattcctcttaaattgttggcttgatttaggatcgtaatgg |
436 |
Q |
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| T |
47947021 |
ggtaataattaataacatgtgtttttgtagtgtataaaagaactattaattaatttactaattcctcttaaattgttggcttgatttaggatcgtaatgg |
47946922 |
T |
|
| Q |
437 |
gaactggtggcttagaatgaaggataaaatcattgtaggttattggccagcagcgatagtgggtaacttacaacatagtgcaacattggttcaatggggt |
536 |
Q |
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| T |
47946921 |
gaactggtggcttagaatgaaggataaaatcattgtaggttattggccagcagcgatagtgggtaacttacaacatagtgcaacattggttcaatggggt |
47946822 |
T |
|
| Q |
537 |
ggacaagtgtttagttataatgtgaaaacaacccctcctcacacaggaac |
586 |
Q |
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| T |
47946821 |
ggacaagtgtttagttataatgtgaaaacaacccctcctcacacaggaac |
47946772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 47920711 - 47920583
Alignment:
| Q |
1 |
tgttcatctatcggagttcatattcttaatgctctgtatatgttatggttcaggttaatccaaagttgtatggtgaccacaactcccgattgtttgccgc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| || || | | |
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| T |
47920711 |
tgttcatctatcggagttcatattcttaatgctctgtatatgttatggttcaggttaatccaaagttgtatggtgaccataatacccgtttcttcgtcta |
47920612 |
T |
|
| Q |
101 |
ttggactgtaagttcctatttattgaaag |
129 |
Q |
| |
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||||||||||||||| |||||||||||| |
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| T |
47920611 |
ttggactgtaagttctcatttattgaaag |
47920583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 409 - 586
Target Start/End: Complemental strand, 47935807 - 47935630
Alignment:
| Q |
409 |
ttgttggcttgatttaggatcgtaatgggaactggtggcttagaatgaaggataaaatcattgtaggttattggccagcagcgatagtgggtaacttaca |
508 |
Q |
| |
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||||| |||||||||||||| |||| ||||||||||||||| ||||||||| ||||| ||||||||||||||||| | || ||||||| ||| |
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| T |
47935807 |
ttgtttgcttgatttaggatgaggatggaaactggtggcttagagtgaaggataccatcatggtaggttattggccagcggaattattgggtaatttaag |
47935708 |
T |
|
| Q |
509 |
acatagtgcaacattggttcaatggggtggacaagtgtttagttataatgtgaaaacaacccctcctcacacaggaac |
586 |
Q |
| |
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||| ||||||||||||||||||||||| |||||||||||||||||| | || ||||| |||||||||||||||||||| |
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| T |
47935707 |
acacagtgcaacattggttcaatggggaggacaagtgtttagttatcaggtcaaaactacccctcctcacacaggaac |
47935630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 438 - 586
Target Start/End: Complemental strand, 47928344 - 47928196
Alignment:
| Q |
438 |
aactggtggcttagaatgaaggataaaatcattgtaggttattggccagcagcgatagtgggtaacttacaacatagtgcaacattggttcaatggggtg |
537 |
Q |
| |
|
||||||||| ||| | ||||| |||| ||| |||||||||||||||||||| | || | ||||| ||| ||| |||||||||||| |||||||||||| |
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| T |
47928344 |
aactggtggtttaaagtgaagaataacatccctgtaggttattggccagcagagttattaggtaatttaagacacagtgcaacattgattcaatggggtg |
47928245 |
T |
|
| Q |
538 |
gacaagtgtttagttataatgtgaaaacaacccctcctcacacaggaac |
586 |
Q |
| |
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||||||||||||||||| | || ||||||| ||||||||||||||||| |
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| T |
47928244 |
gacaagtgtttagttatgaggtcaaaacaaaacctcctcacacaggaac |
47928196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 32 - 115
Target Start/End: Complemental strand, 47941357 - 47941275
Alignment:
| Q |
32 |
ctctgtatatgttatggttcaggttaatccaaagttgtatggtgaccacaactcccgattgtttgccgcttggactgtaagttc |
115 |
Q |
| |
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|||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
47941357 |
ctctctatatgttatggtt-aggttaatccgaagttgtatggtgaccacaactcccgattgtttaccgcttggactgtaagttc |
47941275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 176 - 314
Target Start/End: Complemental strand, 47941135 - 47940997
Alignment:
| Q |
176 |
ttgattgcggtgcagcaagattcataccatacaacaggttgcttcgatcttacttgccaaggatttgtgcaaatagcctcagagatagcacttggttcta |
275 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||||| |||||||| || || ||||||||||||||| ||||| | ||||||||||||| |
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| T |
47941135 |
ttgattgcggtgcagaaagattcataccagtcaacaggttgctttgatcttacctgtagtggttttgtgcaaatagccacagagtttgcacttggttcta |
47941036 |
T |
|
| Q |
276 |
ccgtaggaccttattcatctcagtttaaccaacaatatg |
314 |
Q |
| |
|
| || | |||||||||| | ||||||||||||||||| |
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| T |
47941035 |
cagtggaaccttattcagccaggtttaaccaacaatatg |
47940997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 438 - 554
Target Start/End: Complemental strand, 47918579 - 47918463
Alignment:
| Q |
438 |
aactggtggcttagaatgaaggataaaatcattgtaggttattggccagcagcgatagtgggtaacttacaacatagtgcaacattggttcaatggggtg |
537 |
Q |
| |
|
||||||||||||| | ||||| |||| || |||||||||||||||| || | ||||| ||||| ||||| | |||| |||||||||||||||||| |
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| T |
47918579 |
aactggtggcttaaagtgaagaataacattcctgtaggttattggccaaaagagttagtgagtaacctacaaagttctgcatcattggttcaatggggtg |
47918480 |
T |
|
| Q |
538 |
gacaagtgtttagttat |
554 |
Q |
| |
|
||||||||||||||||| |
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| T |
47918479 |
gacaagtgtttagttat |
47918463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 47928778 - 47928708
Alignment:
| Q |
44 |
tatggttcaggttaatccaaagttgtatggtgaccacaactcccgattgtttgccgcttggactgtaagtt |
114 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| |||| ||||| || |||||||||||||| |
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| T |
47928778 |
tatggtttaggttaatccaaagttgtatggtgaccacaacacccgcttgttcacctattggactgtaagtt |
47928708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 438 - 586
Target Start/End: Complemental strand, 47909416 - 47909268
Alignment:
| Q |
438 |
aactggtggcttagaatgaaggataaaatcattgtaggttattggccagcagcgatagtgggtaacttacaacatagtgcaacattggttcaatggggtg |
537 |
Q |
| |
|
||||||||||||| ||| ||| |||| || ||||||||||||||||| | | || | ||||| || |||| |||||||| |||||||||||||| |
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| T |
47909416 |
aactggtggcttaaaattaagaataatataccagtaggttattggccagctgagttatttggtaatttgaaacacagtgcaacgacggttcaatggggtg |
47909317 |
T |
|
| Q |
538 |
gacaagtgtttagttataatgtgaaaacaacccctcctcacacaggaac |
586 |
Q |
| |
|
||||||| ||||||||| || ||||||| ||||||||||||||||| |
|
|
| T |
47909316 |
gacaagtatttagttatgcggttaaaacaaaacctcctcacacaggaac |
47909268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 303 - 342
Target Start/End: Complemental strand, 47919356 - 47919317
Alignment:
| Q |
303 |
accaacaatatgaaatcaacgttggaatattttgggtaat |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
47919356 |
accaacaatatgaaatcaacgttggaatatttcgggtaat |
47919317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 248
Target Start/End: Complemental strand, 47909690 - 47909616
Alignment:
| Q |
174 |
tattgattgcggtgcagcaagattcataccatacaacaggttgcttcgatcttacttgccaaggatttgtgcaaa |
248 |
Q |
| |
|
||||||||| ||||||| ||||| ||||| | ||||||||||||| |||||||||||| | || |||||||||| |
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|
| T |
47909690 |
tattgattgtggtgcagaaagatacatacaagtcaacaggttgctttgatcttacttgcaagggttttgtgcaaa |
47909616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 305 - 347
Target Start/End: Complemental strand, 47928472 - 47928430
Alignment:
| Q |
305 |
caacaatatgaaatcaacgttggaatattttgggtaataatta |
347 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
47928472 |
caacaatatgaaatcaatgttggaatatttcaggtaataatta |
47928430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 305 - 345
Target Start/End: Complemental strand, 47909559 - 47909519
Alignment:
| Q |
305 |
caacaatatgaaatcaacgttggaatattttgggtaataat |
345 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
47909559 |
caacaatatgaaataaacgttggaatatttcaggtaataat |
47909519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 508 - 544
Target Start/End: Original strand, 3861330 - 3861366
Alignment:
| Q |
508 |
aacatagtgcaacattggttcaatggggtggacaagt |
544 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||| |
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|
| T |
3861330 |
aacatagtgccacattggttcaatggggtggacaagt |
3861366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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