View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18878_low_5 (Length: 538)
Name: NF18878_low_5
Description: NF18878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18878_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 102 - 526
Target Start/End: Original strand, 26103772 - 26104199
Alignment:
| Q |
102 |
accatggtgctcccatgagtttttctcatagttctactagaacgcaaaactcaacaaagagaaaatctcgttcagaaaatcatgatgatggaaaga---a |
198 |
Q |
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| T |
26103772 |
accatggtcctcccatgagtttttctcatagttctactagaaagcaaaactcaacaaagagaaaatctcgttcagaaaatcatgatgatggaaagaagaa |
26103871 |
T |
|
| Q |
199 |
gaagaagaaacaaacaaccactagcaccaacaaaaaactggttcagaacgagccagaagaagaaacaaacaaaacaaacactgttacggaacaaggtgaa |
298 |
Q |
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| T |
26103872 |
gaagaagaaacaagcaaccactagcaccaacaacaaactgattcagaacaagccagaagaagaaacaaacaaaacaaacactgttatggaacaaggtgaa |
26103971 |
T |
|
| Q |
299 |
tcctcgaaaagctttaactgcggtatatgctttgattctgtaacatatactagtttgttcacagctagttcatgcaatcatctattttgtactaattgca |
398 |
Q |
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| T |
26103972 |
tcctcaaaaagctttaactgcggtatatgctttgattctgtaaaaaacactaatatgttcactgctagttcatgcaatcatccattttgtactaattgca |
26104071 |
T |
|
| Q |
399 |
tatccaagtatgtggctgttgaaagagagaaagatgtggtgaaagtgaattgtccggagccggaatgtactgtggaactgaaaccagaaactttgcaata |
498 |
Q |
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| T |
26104072 |
tatccaagtatgtggctgttcaaagagagaaagatgtggtgaaagtgaattgtccggagccggaatgtattgtggaactgaaactagaaactttgcaata |
26104171 |
T |
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| Q |
499 |
ttttttacctaaaaaagttattgctgat |
526 |
Q |
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| T |
26104172 |
ttttttacctaaaaaagttattgctgat |
26104199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 26103688 - 26103753
Alignment:
| Q |
15 |
attacagtcctcccacaactagatcccgtagtgcttactatgttcgtcccataacaagatctctta |
80 |
Q |
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| T |
26103688 |
attacagttttcccataactaggtctcgtagtgcttactatggtcgtcccataactcgatctctta |
26103753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 343
Target Start/End: Complemental strand, 33532743 - 33532672
Alignment:
| Q |
269 |
aaaacaaacactgttacggaacaaggtgaatcctcgaaaagctttaactgcggtatatgctttgattctgtaaca |
343 |
Q |
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| T |
33532743 |
aaaacaaagacagttatagaacaaggtcaatcctcaaaaatctt---ctgtggtatatgctttgattctgtaaca |
33532672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 3e-31; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 290 - 487
Target Start/End: Original strand, 25027012 - 25027209
Alignment:
| Q |
290 |
caaggtgaatcctcgaaaagctttaactgcggtatatgctttgattctgtaacatatactagtttgttcacagctagttcatgcaatcatctattttgta |
389 |
Q |
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|||||| |||||||||||||||| | ||| |||||||||||||||||||||||| ||| |||||||| | |||||||||||||||| ||||||| |
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| T |
25027012 |
caaggtcaatcctcgaaaagcttcagctgtggtatatgctttgattctgtaacagtctctaaaatgttcacaacaagttcatgcaatcatcccttttgta |
25027111 |
T |
|
| Q |
390 |
ctaattgcatatccaagtatgtggctgttgaaagagagaaagatgtggtgaaagtgaattgtccggagccggaatgtactgtggaactgaaaccagaa |
487 |
Q |
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| T |
25027112 |
ctaattgcatatccatgtatgtggatgttcagagaaaagaaaacgtggtgaaactaaattgtccaaatccagattgttctgtggaactgaaaccagaa |
25027209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 249 - 514
Target Start/End: Original strand, 25014134 - 25014396
Alignment:
| Q |
249 |
agccagaagaagaaacaaacaaaacaaacactgttacggaacaaggtgaatcctcgaaaagctttaactgcggtatatgctttgattctgtaacatatac |
348 |
Q |
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|||||||| |||| | || ||||||||| || | || ||||||||| ||||||| |||| || | || |||||||||||||||||||||||| | | |
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| T |
25014134 |
agccagaaaaagataaaagcaaaacaaagacagctatagaacaaggtcaatcctctaaaatctgt---tgtggtatatgctttgattctgtaacaaactc |
25014230 |
T |
|
| Q |
349 |
tagtttgttcacagctagttcatgcaatcatctattttgtactaattgcatatccaagtatgtggctgttgaaagagagaaagatgtggtgaaagtgaat |
448 |
Q |
| |
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|| | |||| || | ||| ||||||||||| ||||||||||| |||||||||||||||||| |||||| | | || | ||||| ||| | || |
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| T |
25014231 |
taatatgttttcaaccggtttatgcaatcatcccttttgtactaagtgcatatccaagtatgtgaagattgaaataaaagaaaaagtggttaaaatcaag |
25014330 |
T |
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| Q |
449 |
tgtccggagccggaatgtactgtggaactgaaaccagaaactttgcaatattttttacctaaaaaa |
514 |
Q |
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| T |
25014331 |
tgtccggatccagaatgttctgttgaactcaaaccagaacatttgcaatgcattttacctaaaaaa |
25014396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 366 - 514
Target Start/End: Complemental strand, 24972120 - 24971972
Alignment:
| Q |
366 |
gttcatgcaatcatctattttgtactaattgcatatccaagtatgtggctgttgaaagagagaaagatgtggtgaaagtgaattgtccggagccggaatg |
465 |
Q |
| |
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||||||||||||| | ||||||||||| |||||||||||| ||| | ||| ||||| | || | ||||||||||||| |||||||| || ||||| |
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| T |
24972120 |
gttcatgcaatcaccccttttgtactaagtgcatatccaagaatgcgaaagttcaaagaaaagaaaaaatggtgaaagtgaagtgtccggatccagaatg |
24972021 |
T |
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| Q |
466 |
tactgtggaactgaaaccagaaactttgcaatattttttacctaaaaaa |
514 |
Q |
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| T |
24972020 |
ttctgttgaactgaaaccagaacatttgcaacccattttacctaaaaaa |
24971972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 249 - 514
Target Start/End: Original strand, 24990597 - 24990859
Alignment:
| Q |
249 |
agccagaagaagaaacaaacaaaacaaacactgttacggaacaaggtgaatcctcgaaaagctttaactgcggtatatgctttgattctgtaacatatac |
348 |
Q |
| |
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|||||||| |||| | || ||||||||| || | || ||||||||| ||||||| |||| || | || |||||||||||||||||||||||| | | |
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| T |
24990597 |
agccagaaaaagataaaagcaaaacaaagacagctatagaacaaggtcaatcctctaaaatctgt---tgtggtatatgctttgattctgtaacaaactc |
24990693 |
T |
|
| Q |
349 |
tagtttgttcacagctagttcatgcaatcatctattttgtactaattgcatatccaagtatgtggctgttgaaagagagaaagatgtggtgaaagtgaat |
448 |
Q |
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|| | |||| || | ||| ||||||||||| ||||||||||| |||||||||||||||||| || ||| | | || | ||||| ||| | || |
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| T |
24990694 |
taatatgttttcaaccggtttatgcaatcatcccttttgtactaagtgcatatccaagtatgtgaagatttaaataaaagaaaaagtggttaaaatcaag |
24990793 |
T |
|
| Q |
449 |
tgtccggagccggaatgtactgtggaactgaaaccagaaactttgcaatattttttacctaaaaaa |
514 |
Q |
| |
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|||||||| || |||||| |||| ||||| ||||||||| |||||||| |||||||||||||| |
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| T |
24990794 |
tgtccggatccagaatgttctgttgaactcaaaccagaacatttgcaatgcattttacctaaaaaa |
24990859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 343
Target Start/End: Original strand, 16868604 - 16868675
Alignment:
| Q |
269 |
aaaacaaacactgttacggaacaaggtgaatcctcgaaaagctttaactgcggtatatgctttgattctgtaaca |
343 |
Q |
| |
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|||||||| || |||| ||||||||| ||||||| |||| ||| ||| |||||||||||||||||||||||| |
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| T |
16868604 |
aaaacaaagacagttatagaacaaggtcaatcctcaaaaatctt---ctgtggtatatgctttgattctgtaaca |
16868675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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