View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18878_low_8 (Length: 377)
Name: NF18878_low_8
Description: NF18878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18878_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 4 - 362
Target Start/End: Complemental strand, 41493641 - 41493283
Alignment:
| Q |
4 |
gtcccccctaagtttagtgacgcgccaatgatctgacccaagtccacggcatcacatttccaatgtattgtccactttgagtcttatgtacaagcactta |
103 |
Q |
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| T |
41493641 |
gtcccccctaagtttagtgacgcgccaatgatctgacccaagtccacggcatcacatttccaatgtattgtccactttgagtctaatgtagaagcactta |
41493542 |
T |
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| Q |
104 |
caattttgtcaattgtaaaaggcatctcaatagttttttgaagaagaggcatctcaatagttagtcgatgactatttcttataaactgcatttcttctta |
203 |
Q |
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| T |
41493541 |
caattttgtcaattgtaaaaggcatctcaatagttttttgaagaagaggcatctcaatagttagtcgatgactattgcttataaactgcatttcatctta |
41493442 |
T |
|
| Q |
204 |
attcttaaacaatgtaacattttttggtgtactaggacacttgtattatgtttgttacgacttatgacaataaagaggtttaagattcagatgattgttt |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
41493441 |
attcttaaacaatgtaacattttttggtgtactaggacacttgtattatgtttgttacgacttatgacaataaagagatttaagattcagatgattgttt |
41493342 |
T |
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| Q |
304 |
ttaaactcagaatgttaactcatatactcatccgagtttgtgtttttaggtatgaattt |
362 |
Q |
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| T |
41493341 |
tcaaactcagaatgttaactcatatactcgtccgagtttgtgtttttaggtatgaattt |
41493283 |
T |
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