View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18878_low_9 (Length: 360)

Name: NF18878_low_9
Description: NF18878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18878_low_9
NF18878_low_9
[»] chr2 (4 HSPs)
chr2 (5-208)||(7157675-7157878)
chr2 (261-317)||(7157618-7157674)
chr2 (206-237)||(13754182-13754213)
chr2 (207-235)||(14288658-14288686)
[»] chr8 (2 HSPs)
chr8 (238-268)||(31760002-31760032)
chr8 (206-234)||(8672724-8672752)
[»] chr6 (2 HSPs)
chr6 (267-309)||(13692625-13692667)
chr6 (206-235)||(12732404-12732433)
[»] chr5 (1 HSPs)
chr5 (206-235)||(6754158-6754187)
[»] chr7 (1 HSPs)
chr7 (205-237)||(42841850-42841882)
[»] chr3 (1 HSPs)
chr3 (267-303)||(31126481-31126517)
[»] chr1 (1 HSPs)
chr1 (207-235)||(8464237-8464265)


Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 5 - 208
Target Start/End: Complemental strand, 7157878 - 7157675
Alignment:
Q  5 cacgactttgtgataagaatctgtgtctgagatcaagggaattgtaacctccaaggatgtggagtaaggtcacatttgggggaatagattacactagatt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7157878 cacgactttgtgataagaatctgtgtctgagatcaagggaattgtaacctccaaggatgtggagtaaggtcacatttgggggaatagattacactagatt 7157779  T
Q  105 ttggtttacgtgtagtgaagtgagggaggttggtttatgtgtagtgtagttttctatgcgcataacttacatgttcatcccaaaatcaacacactatgac 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7157778 ttggtttacgtgtagtgaagtgagggaggttggtttatgtgtagtgtagttttctatgcgcataacttacatgttcatcccaaaatcaagacactatgac 7157679  T
Q  205 ttta 208  Q
    ||||    
T  7157678 ttta 7157675  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 261 - 317
Target Start/End: Complemental strand, 7157674 - 7157618
Alignment:
Q  261 atttgctaaaaaatagcagataattgataagttagattatagcagatgaatttataa 317  Q
    ||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||    
T  7157674 atttgctaaaaaataacagatagttgataagttagattatagcggatgaatttataa 7157618  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 206 - 237
Target Start/End: Complemental strand, 13754213 - 13754182
Alignment:
Q  206 ttactacttccgttcctttttaattgtcactt 237  Q
    ||||||||||||||||||||||||||||||||    
T  13754213 ttactacttccgttcctttttaattgtcactt 13754182  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 235
Target Start/End: Complemental strand, 14288686 - 14288658
Alignment:
Q  207 tactacttccgttcctttttaattgtcac 235  Q
    |||||||||||||||||||||||||||||    
T  14288686 tactacttccgttcctttttaattgtcac 14288658  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 268
Target Start/End: Complemental strand, 31760032 - 31760002
Alignment:
Q  238 aattaaaaaggaacggagggagtatttgcta 268  Q
    |||||||||||||||||||||||||||||||    
T  31760032 aattaaaaaggaacggagggagtatttgcta 31760002  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 234
Target Start/End: Complemental strand, 8672752 - 8672724
Alignment:
Q  206 ttactacttccgttcctttttaattgtca 234  Q
    |||||||||||||||||||||||||||||    
T  8672752 ttactacttccgttcctttttaattgtca 8672724  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 309
Target Start/End: Complemental strand, 13692667 - 13692625
Alignment:
Q  267 taaaaaatagcagataattgataagttagattatagcagatga 309  Q
    ||||||||||| ||||||||||||||||| ||||||| |||||    
T  13692667 taaaaaatagcggataattgataagttagtttatagcggatga 13692625  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 235
Target Start/End: Complemental strand, 12732433 - 12732404
Alignment:
Q  206 ttactacttccgttcctttttaattgtcac 235  Q
    ||||||||||||||||||||||||||||||    
T  12732433 ttactacttccgttcctttttaattgtcac 12732404  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 235
Target Start/End: Original strand, 6754158 - 6754187
Alignment:
Q  206 ttactacttccgttcctttttaattgtcac 235  Q
    ||||||||||||||||||||||||||||||    
T  6754158 ttactacttccgttcctttttaattgtcac 6754187  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 42841850 - 42841882
Alignment:
Q  205 tttactacttccgttcctttttaattgtcactt 237  Q
    |||||||| ||||||||||||||||||||||||    
T  42841850 tttactacatccgttcctttttaattgtcactt 42841882  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 303
Target Start/End: Complemental strand, 31126517 - 31126481
Alignment:
Q  267 taaaaaatagcagataattgataagttagattatagc 303  Q
    |||||||||||| |||||||||||||||| |||||||    
T  31126517 taaaaaatagcaaataattgataagttagcttatagc 31126481  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 235
Target Start/End: Original strand, 8464237 - 8464265
Alignment:
Q  207 tactacttccgttcctttttaattgtcac 235  Q
    |||||||||||||||||||||||||||||    
T  8464237 tactacttccgttcctttttaattgtcac 8464265  T

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