View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18879_high_6 (Length: 298)
Name: NF18879_high_6
Description: NF18879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18879_high_6 |
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| [»] scaffold0479 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 33811001 - 33811238
Alignment:
| Q |
16 |
atcaagaaagttatgttctctattgtgatagtcaaagtgcaattcaccttagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggta |
115 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33811001 |
atcaagaaatttatgttctctattgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggta |
33811100 |
T |
|
| Q |
116 |
tcattggattcgtgatgtgttggagaataaactgctgcaaatagagaaaattcacaccaatgacaacggagcagatatgatgacaaaagttctaccaaaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33811101 |
tcattggattcgtgatgtgttggagaataaactgctgcaaatagagaaaattcacaccaatgacaacggagcagatatgatgacaaaagctctaccaaaa |
33811200 |
T |
|
| Q |
216 |
gagaagatagagttttgtaaacaagctgcaggcctggc |
253 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||| |
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| T |
33811201 |
gagaagatagagttttgtaaacaagctgcaggcttggc |
33811238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 33815919 - 33816156
Alignment:
| Q |
16 |
atcaagaaagttatgttctctattgtgatagtcaaagtgcaattcaccttagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggta |
115 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33815919 |
atcaagaaatttatgttctctattgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggta |
33816018 |
T |
|
| Q |
116 |
tcattggattcgtgatgtgttggagaataaactgctgcaaatagagaaaattcacaccaatgacaacggagcagatatgatgacaaaagttctaccaaaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33816019 |
tcattggattcgtgatgtgttggagaataaactgctgcaaatagagaaaattcacaccaatgacaacggagcagatatgatgacaaaagctctaccaaaa |
33816118 |
T |
|
| Q |
216 |
gagaagatagagttttgtaaacaagctgcaggcctggc |
253 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||| |
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| T |
33816119 |
gagaagatagagttttgtaaacaagctgcaggcttggc |
33816156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 181; Significance: 8e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 4836462 - 4836234
Alignment:
| Q |
16 |
atcaagaaagttatgttctctattgtgatagtcaaagtgcaattcaccttagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggta |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4836462 |
atcaagaaagttatgttctctattgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggta |
4836363 |
T |
|
| Q |
116 |
tcattggattcgtgatgtgttggagaataaactgctgcaaatagagaaaattcacaccaatgacaacggagcagatatgatgacaaaagttctaccaaaa |
215 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || |||||||| |||||||||||| ||||| ||| |
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|
| T |
4836362 |
tcattggatacgtgatgtgttagagaataaactgctgcaaatagagaaaattcacacaaatgagaatggagcagacatgatgacaaaaccgctaccgaaa |
4836263 |
T |
|
| Q |
216 |
gagaagatagagttttgtaaacaagctgc |
244 |
Q |
| |
|
||||||||||||||||| ||||||||||| |
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|
| T |
4836262 |
gagaagatagagttttgcaaacaagctgc |
4836234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 93 - 244
Target Start/End: Complemental strand, 24380105 - 24379954
Alignment:
| Q |
93 |
tcaaaacacatcgatgtgaggtatcattggattcgtgatgtgttggagaataaactgctgcaaatagagaaaattcacaccaatgacaacggagcagata |
192 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||||||||||| |||| || || || |||||||| ||||||||||| | || ||||| || | |
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| T |
24380105 |
tcaaaacacaatgatgtgaggtatcactggattcgtgatgtgttggagagtaaattgttgaaagtagagaaagttcacaccaataagaatggagccgaca |
24380006 |
T |
|
| Q |
193 |
tgatgacaaaagttctaccaaaagagaagatagagttttgtaaacaagctgc |
244 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||| ||||||||||| |
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|
| T |
24380005 |
tgatgacaaaacctctatcaaaagagaagatagagttttgcaaacaagctgc |
24379954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 17 - 244
Target Start/End: Complemental strand, 54968127 - 54967900
Alignment:
| Q |
17 |
tcaagaaagttatgttctctattgtgatagtcaaagtgcaattcaccttagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggtat |
116 |
Q |
| |
|
|||||||||||||||||||||||| || ||||| || |||||||| || |||||||| || |||||||| || || ||||||||||| |||||||||||| |
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| T |
54968127 |
tcaagaaagttatgttctctattgcgacagtcagagcgcaattcatctcagcaagaactcaacataccactccagatcaaaacacattgatgtgaggtat |
54968028 |
T |
|
| Q |
117 |
cattggattcgtgatgtgttggagaataaactgctgcaaatagagaaaattcacaccaatgacaacggagcagatatgatgacaaaagttctaccaaaag |
216 |
Q |
| |
|
|| |||||||||||||||||||| | |||| || || || |||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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|
| T |
54968027 |
cactggattcgtgatgtgttggaaagtaaattgttgaaagtagagaaagttcacaccaatgagaacggagcagatatgatgacaaaagctctaccaaaag |
54967928 |
T |
|
| Q |
217 |
agaagatagagttttgtaaacaagctgc |
244 |
Q |
| |
|
|||||||||||||||| ||||||||||| |
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| T |
54967927 |
agaagatagagttttgcaaacaagctgc |
54967900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 2019 - 2247
Alignment:
| Q |
16 |
atcaagaaagttatgttctctattgtgatagtcaaagtgcaattcaccttagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggta |
115 |
Q |
| |
|
|||||||||| |||||||||||||| || |||||||| || ||||| || |||||||| || ||||| || || || |||||||| || ||||||||||| |
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|
| T |
2019 |
atcaagaaagctatgttctctattgcgacagtcaaagcgcgattcatctcagcaagaactcaacatatcactccagatcaaaacatattgatgtgaggta |
2118 |
T |
|
| Q |
116 |
tcattggattcgtgatgtgttggagaataaactgctgcaaatagagaaaattcacaccaatgacaacggagcagatatgatgacaaaagttctaccaaaa |
215 |
Q |
| |
|
||| |||||||||||||||||||||| |||| || || || |||||||| ||||||||||||| || |||||||| |||||||| ||| |||||||||| |
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|
| T |
2119 |
tcactggattcgtgatgtgttggagagtaaattgttgaaagtagagaaagttcacaccaatgagaatggagcagacatgatgaccaaacctctaccaaaa |
2218 |
T |
|
| Q |
216 |
gagaagatagagttttgtaaacaagctgc |
244 |
Q |
| |
|
|||||||| |||||||| ||||||||||| |
|
|
| T |
2219 |
gagaagattgagttttgcaaacaagctgc |
2247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 22982057 - 22981829
Alignment:
| Q |
16 |
atcaagaaagttatgttctctattgtgatagtcaaagtgcaattcaccttagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggta |
115 |
Q |
| |
|
||||| |||| |||||||||||||| || ||||| ||||| ||||| || |||||||| ||||||||||| || || || |||||||| || |||||||| |
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|
| T |
22982057 |
atcaaaaaagctatgttctctattgcgacagtcagagtgcgattcatctcagcaagaactcgacataccactctagatcgaaacacattgacgtgaggta |
22981958 |
T |
|
| Q |
116 |
tcattggattcgtgatgtgttggagaataaactgctgcaaatagagaaaattcacaccaatgacaacggagcagatatgatgacaaaagttctaccaaaa |
215 |
Q |
| |
|
|| || ||| |||||||||||||| |||| || || || |||||||| ||||||||||||| || |||||||| |||||||||||| |||||||||| |
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|
| T |
22981957 |
ccactgtattaatgatgtgttggagagtaaattgttgaaagtagagaaagttcacaccaatgagaatggagcagacatgatgacaaaacctctaccaaaa |
22981858 |
T |
|
| Q |
216 |
gagaagatagagttttgtaaacaagctgc |
244 |
Q |
| |
|
|| ||||| |||||||| ||||||||||| |
|
|
| T |
22981857 |
gaaaagattgagttttgcaaacaagctgc |
22981829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 23806351 - 23806579
Alignment:
| Q |
16 |
atcaagaaagttatgttctctattgtgatagtcaaagtgcaattcaccttagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggta |
115 |
Q |
| |
|
||||| |||| |||||||||||||| || ||||| ||||| ||||| || |||||||| ||||||||||| || || || |||||||| || |||||||| |
|
|
| T |
23806351 |
atcaaaaaagctatgttctctattgcgacagtcagagtgcgattcatctcagcaagaactcgacataccactctagatcgaaacacattgacgtgaggta |
23806450 |
T |
|
| Q |
116 |
tcattggattcgtgatgtgttggagaataaactgctgcaaatagagaaaattcacaccaatgacaacggagcagatatgatgacaaaagttctaccaaaa |
215 |
Q |
| |
|
|| || ||| |||||||||||||| |||| || || || |||||||| ||||||||||||| || |||||||| |||||||||||| |||||||||| |
|
|
| T |
23806451 |
ccactgtattaatgatgtgttggagagtaaattgttgaaagtagagaaagttcacaccaatgagaatggagcagacatgatgacaaaacctctaccaaaa |
23806550 |
T |
|
| Q |
216 |
gagaagatagagttttgtaaacaagctgc |
244 |
Q |
| |
|
|| ||||| |||||||| ||||||||||| |
|
|
| T |
23806551 |
gaaaagattgagttttgcaaacaagctgc |
23806579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 167
Target Start/End: Complemental strand, 1105201 - 1105112
Alignment:
| Q |
78 |
acataccattcaaggtcaaaacacatcgatgtgaggtatcattggattcgtgatgtgttggagaataaactgctgcaaatagagaaaatt |
167 |
Q |
| |
|
|||||||||| ||| |||||||||||| |||| || ||||||| || | ||| ||||| |||||||||||||| |||||||||||||| |
|
|
| T |
1105201 |
acataccatttaagatcaaaacacatcaatgtaagaaatcattgaatacatgacgtgttagagaataaactgctttaaatagagaaaatt |
1105112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 25003727 - 25003630
Alignment:
| Q |
16 |
atcaagaaagttatgttctctattgtgatagtcaaagtgcaattcaccttagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggta |
115 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||||||||||||| || || || |||||||| || |||||||| |||||||| ||||||||||| |
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| T |
25003727 |
atcaacaaagttatgttccctattgtgatagtcaaagtgcaattcacctcagaaataactcgacata-caatcaaggtc-aaacacatagatgtgaggta |
25003630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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