View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18879_low_2 (Length: 385)
Name: NF18879_low_2
Description: NF18879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18879_low_2 |
 | |
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| [»] chr7 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0479 (1 HSPs) |
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| [»] chr6 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 383
Target Start/End: Original strand, 33810454 - 33810819
Alignment:
| Q |
18 |
tatctcaagaaagttcttgaaaggttcaacatgcataatgcaaaacctgtgcatgttccattgcctggtcatttgaaactcagtaagacacaatgtcctg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
33810454 |
tatctcaagaaagttcttgaaaggttcaacatgcataatgcaaaacctgtgcatgttccattacctggtcatttgaaactcagtaagacacaatgtcctg |
33810553 |
T |
|
| Q |
118 |
agaatgaccaagagaaagaagaaatgagcaaggtgccctattcttcagccgtgggtagccttatgtacgccatggtctgcacgaggccagacatcggtta |
217 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33810554 |
agaatgatcaagagaaagaagaaatgagcaaggtgccctattcttcagccgtgggtagccttatgtacgccatggtctgcacgaggccagacatcggtta |
33810653 |
T |
|
| Q |
218 |
tgctgtaggagtcgtgagtagattcctatcaaatccaggaaaagaacactggagtgctgtgaaatggatactgaggtatctaaaaggaactgccaaaaag |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33810654 |
tgctgtaggagtcgtgagtagattcctatcaaatccaggaaaagaacactggagtgctgtgaaatggatactgaggtatctaaaaggaactgccaaaaag |
33810753 |
T |
|
| Q |
318 |
tgcttatgttttggcaatggaaatcaaatgctcgttggatatgtagatgctgatatggccggagat |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33810754 |
tgcttatgttttggcaatggaaatcaaatgctcgttggatatgtagatgctgatatggccggagat |
33810819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 383
Target Start/End: Original strand, 33815372 - 33815737
Alignment:
| Q |
18 |
tatctcaagaaagttcttgaaaggttcaacatgcataatgcaaaacctgtgcatgttccattgcctggtcatttgaaactcagtaagacacaatgtcctg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
33815372 |
tatctcaagaaagttcttgaaaggttcaacatgcataatgcaaaacctgtgcatgttccattacctggtcatttgaaactcagtaagacacaatgtcctg |
33815471 |
T |
|
| Q |
118 |
agaatgaccaagagaaagaagaaatgagcaaggtgccctattcttcagccgtgggtagccttatgtacgccatggtctgcacgaggccagacatcggtta |
217 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33815472 |
agaatgatcaagagaaagaagaaatgagcaaggtgccctattcttcagccgtgggtagccttatgtacgccatggtctgcacgaggccagacatcggtta |
33815571 |
T |
|
| Q |
218 |
tgctgtaggagtcgtgagtagattcctatcaaatccaggaaaagaacactggagtgctgtgaaatggatactgaggtatctaaaaggaactgccaaaaag |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33815572 |
tgctgtaggagtcgtgagtagattcctatcaaatccaggaaaagaacactggagtgctgtgaaatggatactgaggtatctaaaaggaactgccaaaaag |
33815671 |
T |
|
| Q |
318 |
tgcttatgttttggcaatggaaatcaaatgctcgttggatatgtagatgctgatatggccggagat |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33815672 |
tgcttatgttttggcaatggaaatcaaatgctcgttggatatgtagatgctgatatggccggagat |
33815737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 10 - 385
Target Start/End: Complemental strand, 4837017 - 4836642
Alignment:
| Q |
10 |
aagaatattatctcaagaaagttcttgaaaggttcaacatgcataatgcaaaacctgtgcatgttccattgcctggtcatttgaaactcagtaagacaca |
109 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||| |
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|
| T |
4837017 |
aagaagattatatcaagaaagttcttgaaaggttcaacatgcataatgcaaaacctatgcatgttccactacctggtcatttgaaactcagtaagacaca |
4836918 |
T |
|
| Q |
110 |
atgtcctgagaatgaccaagagaaagaagaaatgagcaaggtgccctattcttcagccgtgggtagccttatgtacgccatggtctgcacgaggccagac |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4836917 |
atgtcctgagaatgaccaagagaaagaagaaatgagcaaggttccctattcttcagctgtgggtagccttatgtacgccatggtctacacgaggccagac |
4836818 |
T |
|
| Q |
210 |
atcggttatgctgtaggagtcgtgagtagattcctatcaaatccaggaaaagaacactggagtgctgtgaaatggatactgaggtatctaaaaggaactg |
309 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4836817 |
atcggttatgttgtaggagtcgtgagtagattcctatcaaacccaggaaaggaacactggagtgctgtgaaatggatactgaggtatataaaaggaactt |
4836718 |
T |
|
| Q |
310 |
ccaaaaagtgcttatgttttggcaatggaaatcaaatgctcgttggatatgtagatgctgatatggccggagatgt |
385 |
Q |
| |
|
||||| || |||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
4836717 |
taaaaaaatgtttatgttttggcaagggaaatcaaatgctcgctggatatgtagatactgatatggccggagatgt |
4836642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 10 - 385
Target Start/End: Complemental strand, 54968683 - 54968308
Alignment:
| Q |
10 |
aagaatattatctcaagaaagttcttgaaaggttcaacatgcataatgcaaaacctgtgcatgttccattgcctggtcatttgaaactcagtaagacaca |
109 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
54968683 |
aagaagattatatcaagaaagttcttgaaaggttcaacatgcataatgcaaaacctgtgcatgttccactacctggtcatttgaaactcagtaagacaca |
54968584 |
T |
|
| Q |
110 |
atgtcctgagaatgaccaagagaaagaagaaatgagcaaggtgccctattcttcagccgtgggtagccttatgtacgccatggtctgcacgaggccagac |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| || |||||| |
|
|
| T |
54968583 |
atgtcctgagaatgaccaagagaaagaagaaatgagcaaggtgccctattcttcagctgtgggtagccttatgtacgcaatggtttgcacaagaccagac |
54968484 |
T |
|
| Q |
210 |
atcggttatgctgtaggagtcgtgagtagattcctatcaaatccaggaaaagaacactggagtgctgtgaaatggatactgaggtatctaaaaggaactg |
309 |
Q |
| |
|
|| | |||||| |||||||| |||||||||||||| || |||||||||||||| || |||| |||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
54968483 |
attgcttatgcggtaggagttgtgagtagattcctgtcgaatccaggaaaagagcattggaatgctgtgaaatggatattgaggtatctaagaggaactg |
54968384 |
T |
|
| Q |
310 |
ccaaaaagtgcttatgttttggcaatggaaatcaaatgctcgttggatatgtagatgctgatatggccggagatgt |
385 |
Q |
| |
|
||||| | || || | |||||||||| ||||||| | ||| |||| |||||||||| |||||||| |||||||| |
|
|
| T |
54968383 |
ccaaacaatgtttgcgctttggcaatgaaaatcaattactcattgggcatgtagatgcagatatggcaggagatgt |
54968308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 22 - 385
Target Start/End: Original strand, 1476 - 1839
Alignment:
| Q |
22 |
tcaagaaagttcttgaaaggttcaacatgcataatgcaaaacctgtgcatgttccattgcctggtcatttgaaactcagtaagacacaatgtcctgagaa |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1476 |
tcaagaaagttcttgaaaggttcaacatgcataatgcaaaacctgtgcatgttccactacctggtcatttgaaactcaataagacacaatgtcctgagaa |
1575 |
T |
|
| Q |
122 |
tgaccaagagaaagaagaaatgagcaaggtgccctattcttcagccgtgggtagccttatgtacgccatggtctgcacgaggccagacatcggttatgct |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||| ||||| || |||||||| | |||||| |
|
|
| T |
1576 |
tgaccaagagaaagaagaaatgagcaaggtgccctattcttcagctgtgggaagccttatgtacgcaatggtttgcacaagaccagacattgcttatgcg |
1675 |
T |
|
| Q |
222 |
gtaggagtcgtgagtagattcctatcaaatccaggaaaagaacactggagtgctgtgaaatggatactgaggtatctaaaaggaactgccaaaaagtgct |
321 |
Q |
| |
|
|||||||| |||||||||||||| || |||||||||||||| || |||| || ||||||||||||| |||||||||||| ||||||||||||| | || | |
|
|
| T |
1676 |
gtaggagttgtgagtagattcctgtcgaatccaggaaaagagcattggaatgatgtgaaatggatattgaggtatctaagaggaactgccaaacaatgtt |
1775 |
T |
|
| Q |
322 |
tatgttttggcaatggaaatcaaatgctcgttggatatgtagatgctgatatggccggagatgt |
385 |
Q |
| |
|
| | |||||||||| ||||||| | ||| |||| |||||||||| |||||||| |||||||| |
|
|
| T |
1776 |
tgagctttggcaatgaaaatcaattactcattgggcatgtagatgcagatatggcaggagatgt |
1839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 98; Significance: 4e-48; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 120 - 385
Target Start/End: Complemental strand, 22982502 - 22982237
Alignment:
| Q |
120 |
aatgaccaagagaaagaagaaatgagcaaggtgccctattcttcagccgtgggtagccttatgtacgccatggtctgcacgaggccagacatcggttatg |
219 |
Q |
| |
|
|||||| |||| ||| |||||||||||||||||||||||||||| | |||||||||||||||||||| |||| ||||| || |||||||| | ||||| |
|
|
| T |
22982502 |
aatgacgaagaaaaaaaagaaatgagcaaggtgccctattcttctgttgtgggtagccttatgtacgcattggtttgcacaagaccagacattgcttatg |
22982403 |
T |
|
| Q |
220 |
ctgtaggagtcgtgagtagattcctatcaaatccaggaaaagaacactggagtgctgtgaaatggatactgaggtatctaaaaggaactgccaaaaagtg |
319 |
Q |
| |
|
| |||||| | ||||||||||| | || |||| || ||| || || |||| ||||||||||||||||||||||||||||| ||||| ||||||| | || |
|
|
| T |
22982402 |
cggtaggaattgtgagtagattattgtcgaatctagaaaaggagcattggaatgctgtgaaatggatactgaggtatctaagaggaattgccaaacaatg |
22982303 |
T |
|
| Q |
320 |
cttatgttttggcaatggaaatcaaatgctcgttggatatgtagatgctgatatggccggagatgt |
385 |
Q |
| |
|
|| || |||||||||| ||||||| | ||| ||| |||||||||| |||||||| |||||||| |
|
|
| T |
22982302 |
tttgtgctttggcaatgaaaatcaattactcattgcgcatgtagatgcagatatggcaggagatgt |
22982237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 120 - 385
Target Start/End: Original strand, 23805906 - 23806171
Alignment:
| Q |
120 |
aatgaccaagagaaagaagaaatgagcaaggtgccctattcttcagccgtgggtagccttatgtacgccatggtctgcacgaggccagacatcggttatg |
219 |
Q |
| |
|
|||||| |||| ||| |||||||||||||||||||||||||||| | |||||||||||||||||||| |||| ||||| || |||||||| | ||||| |
|
|
| T |
23805906 |
aatgacgaagaaaaaaaagaaatgagcaaggtgccctattcttctgttgtgggtagccttatgtacgcattggtttgcacaagaccagacattgcttatg |
23806005 |
T |
|
| Q |
220 |
ctgtaggagtcgtgagtagattcctatcaaatccaggaaaagaacactggagtgctgtgaaatggatactgaggtatctaaaaggaactgccaaaaagtg |
319 |
Q |
| |
|
| |||||| | ||||||||||| | || |||| || ||| || || |||| ||||||||||||||||||||||||||||| ||||| ||||||| | || |
|
|
| T |
23806006 |
cggtaggaattgtgagtagattattgtcgaatctagaaaaggagcattggaatgctgtgaaatggatactgaggtatctaagaggaattgccaaacaatg |
23806105 |
T |
|
| Q |
320 |
cttatgttttggcaatggaaatcaaatgctcgttggatatgtagatgctgatatggccggagatgt |
385 |
Q |
| |
|
|| || |||||||||| ||||||| | ||| ||| |||||||||| |||||||| |||||||| |
|
|
| T |
23806106 |
tttgtgctttggcaatgaaaatcaattactcattgcgcatgtagatgcagatatggcaggagatgt |
23806171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 29 - 385
Target Start/End: Complemental strand, 25004652 - 25004300
Alignment:
| Q |
29 |
agttcttgaaaggttcaacatgcataatgcaaaacctgtgcatgttccattgcctggtcatttgaaactcagtaagacacaatgtcctgagaatgaccaa |
128 |
Q |
| |
|
|||| |||||| ||||||| |||| ||| || || ||||||||||||| | | ||||||||||||||| ||||||| | || | | || |||||||| |
|
|
| T |
25004652 |
agtttttgaaatgttcaacgtgcaaaatacaccacttgtgcatgttccactac-tggtcatttgaaacttagtaagataatatctacgga--atgaccaa |
25004556 |
T |
|
| Q |
129 |
gagaaagaagaaatgagcaaggtgccctattcttcagccgtgggtagccttatgtacgccatggtctgcacgaggccagacatcggttatgctgtaggag |
228 |
Q |
| |
|
|| |||||||||||| | || | |||| |||||||| |||| ||| |||| ||| | |||||| |||||||| ||| | |||| ||||| |||||| | |
|
|
| T |
25004555 |
gaaaaagaagaaatgggttagtttccctcttcttcagttgtggatagtcttacgtatgtcatggtttgcacgagaccata-atcgattatgttgtagg-g |
25004458 |
T |
|
| Q |
229 |
tcgtgagtagattcctatcaaatccaggaaaagaacactggagtgctgtgaaatggatactgaggtatctaaaaggaactgccaaaaagtgcttatg-tt |
327 |
Q |
| |
|
| ||||||||||| ||| || | || ||| ||||||| ||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||| || |
|
|
| T |
25004457 |
ttttgagtagattcaaatcgaacctagaaaatgaacactagagtgctatgaaatggatactgaggtatctaaaaggaacaggcaaaaagtgcttatgttt |
25004358 |
T |
|
| Q |
328 |
ttggcaatggaaatcaaatgctcgttggatatgtagatgctgatatggccggagatgt |
385 |
Q |
| |
|
||||||||||| ||||||| || |||||||||||||| | ||||||||| |||||||| |
|
|
| T |
25004357 |
ttggcaatggagatcaaattcttgttggatatgtagaagttgatatggcgggagatgt |
25004300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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