View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18879_low_4 (Length: 318)
Name: NF18879_low_4
Description: NF18879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18879_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 46995875 - 46996179
Alignment:
| Q |
1 |
atcatggttgactgctctgtgatggtcaaaaaatgaatgaacaatgggtgggacatcaactggtgagagaatatcattgatggtaatatctaaagttgca |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
46995875 |
atcatggttgactgctctgtgatggtcaaagaatgaatgaacaatgggtgggacatcaattggtgagagaatatcattgatggtaatatctaaagttgca |
46995974 |
T |
|
| Q |
101 |
tgaataaatttagctccgggactgtttttgcaatcgacaaaaacagtgtaagaatgaggatcttcggattttttagtaacaaaacgacctgagaggggat |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
46995975 |
tgaataaatttagctccgagactgtttttgcaatcgacaaaaacagtgtaagaatgaggatcttcggattttttagtaacaagacgacctgagaggggat |
46996074 |
T |
|
| Q |
201 |
agaaatggaaaagtgtgagggaaagggagtgtttgagtttgtcaatgaaatgttgttggtttagtgatgaagttggttttttgaagagaagggccttttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46996075 |
agaaatggaaaagtgtgagggaaagggagtgtttgagtttgtcaatgaaatgctgttggtttagtgatgaagttggttttttgaagagaagggccttttg |
46996174 |
T |
|
| Q |
301 |
gatat |
305 |
Q |
| |
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||||| |
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| T |
46996175 |
gatat |
46996179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 46998123 - 46998362
Alignment:
| Q |
1 |
atcatggttgactgctctgtgatggtcaaaaaatgaatgaacaatgggtgggacatcaactggtgagagaatatcattgatggtaatatctaaagttgca |
100 |
Q |
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||||||||||||||||||||| |||||||| |||||||||||||| ||||| |||||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
46998123 |
atcatggttgactgctctgtggtggtcaaagaatgaatgaacaataggtggcacatcaacaggtgagagaatatcattgatggtgatatctaaagttgca |
46998222 |
T |
|
| Q |
101 |
tgaataaatttagctccgggactgtttttgcaatcgacaaaaacagtgtaagaatgaggatcttcggattttttagtaacaaaacgacctgagaggggat |
200 |
Q |
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|||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||| ||||| |||||||||||||||| ||| ||||||||||||| |
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| T |
46998223 |
tgaataaatttagctccgagactgtttttgcaatcaacaaaaacagtgtaaaaatgagggtcttcagattttttagtaacaagacggcctgagaggggat |
46998322 |
T |
|
| Q |
201 |
agaaatggaaaagtgtgagggaaagggagtgtttgagttt |
240 |
Q |
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||||||||||||||||||||||||||||||||| ||||| |
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| T |
46998323 |
ggaaatggaaaagtgtgagggaaagggagtgtttcagttt |
46998362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 46981047 - 46981286
Alignment:
| Q |
1 |
atcatggttgactgctctgtgatggtcaaaaaatgaatgaacaatgggtgggacatcaactggtgagagaatatcattgatggtaatatctaaagttgca |
100 |
Q |
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|||||||||||||||| ||| ||| ||||| || ||||| ||||||||||||||||||| || | ||| |||||||| ||||| ||||||||||||||| |
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| T |
46981047 |
atcatggttgactgctttgtcatgatcaaagaacgaatggacaatgggtgggacatcaatgggggtgaggatatcatttatggtgatatctaaagttgca |
46981146 |
T |
|
| Q |
101 |
tgaataaatttagctccgggactgtttttgcaatcgacaaaaacagtgtaagaatgaggatcttcggattttttagtaacaaaacgacctgagaggggat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
46981147 |
tgaataaatttagctccgggactgtttttgcaatcgacgaaaacagtgtaagaatcaggatcttcggattttttagtaacaagacgacctgagaggggat |
46981246 |
T |
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| Q |
201 |
agaaatggaaaagtgtgagggaaagggagtgtttgagttt |
240 |
Q |
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||||||||||||| |||||||||||||||||||| ||||| |
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| T |
46981247 |
agaaatggaaaagcgtgagggaaagggagtgtttcagttt |
46981286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 46975060 - 46975376
Alignment:
| Q |
1 |
atcatggttgactgctctgtgatggtcaaaaaatgaatgaacaatgggtgggacatcaactggtgagagaatatcattgatggtaatatctaaagttgca |
100 |
Q |
| |
|
||||||| |||||||| ||| ||| ||||| || || || |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
46975060 |
atcatggctgactgctttgtcatgatcaaagaacgattggacaatgggtgggacatcaactggtgagagaatatcatttatggtgatatctaaagttgca |
46975159 |
T |
|
| Q |
101 |
tgaataaatttagctccgggactgtttttgcaatcgacaaaaacagtgtaagaatgaggatcttcggattttttagtaacaaaacgacctgagaggggat |
200 |
Q |
| |
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||||||||| |||||||| |||||||||||||||| || |||||||||||||||||||| ||||| |||||||||||||||| |||||| || ||||||| |
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| T |
46975160 |
tgaataaatctagctccgcgactgtttttgcaatcaacgaaaacagtgtaagaatgagggtcttcagattttttagtaacaagacgaccagacaggggat |
46975259 |
T |
|
| Q |
201 |
agaaatggaaaagtgtgagggaaagggagtgtttgagtttg------------tcaatgaaatgttgttggtttagtgatgaagttggttttttgaagag |
288 |
Q |
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| |||| ||||||||||| ||||| ||||||||||||||| |||||||| |||||||||||||||||||| |||||||| |||||||| |
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| T |
46975260 |
aataatgaaaaagtgtgagagaaagagagtgtttgagtttgtccactaggttctcaatgaagtgttgttggtttagtgatgatgttggtttcttgaagag |
46975359 |
T |
|
| Q |
289 |
aagggccttttggatat |
305 |
Q |
| |
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||| |||||||||||| |
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| T |
46975360 |
aagtcccttttggatat |
46975376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 47001815 - 47002005
Alignment:
| Q |
1 |
atcatggttgactgctctgtgatggtcaaaaaatgaatgaacaatgggtgggacatcaactggtgagagaatatcattgatggtaatatctaaagttgca |
100 |
Q |
| |
|
||||||||| ||||||||||| |||||||| || || | ||| ||||||||||||||||| |||||||||||| |||||| ||| ||||||||||||||| |
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| T |
47001815 |
atcatggttaactgctctgtggtggtcaaagaacgatttaactatgggtgggacatcaacaggtgagagaataacattgacggtgatatctaaagttgca |
47001914 |
T |
|
| Q |
101 |
tgaataaatttagctccgggactgtttttgcaatcgacaaaaacagtgtaagaatgaggatcttcggattttttagtaacaaaacgacctg |
191 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| | |||||| |
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| T |
47001915 |
agaataaatttagctcctcgactgtttttgcaatcgacaaaaacagtgtaagaatgaggatcttcagatttttgagtaacaagaagacctg |
47002005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 301
Target Start/End: Original strand, 46981303 - 46981362
Alignment:
| Q |
245 |
atgaaatgttgttggtttag---tgatgaagttggttttttgaagagaagggccttttgg |
301 |
Q |
| |
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|||||||||||||||||||| |||||| |||||||||||||||| ||| |||||||| |
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|
| T |
46981303 |
atgaaatgttgttggtttagtgatgatgatgttggttttttgaagataagtcccttttgg |
46981362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 305
Target Start/End: Original strand, 46998379 - 46998442
Alignment:
| Q |
245 |
atgaaatgttgttggtttagtgatgaag---ttggttttttgaagagaagggccttttggatat |
305 |
Q |
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||||||||||||| |||||||||||| | ||||||||||||||||||| ||||||| |||| |
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| T |
46998379 |
atgaaatgttgtttgtttagtgatgatgatgttggttttttgaagagaagacccttttgaatat |
46998442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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