View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18879_low_8 (Length: 242)
Name: NF18879_low_8
Description: NF18879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18879_low_8 |
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| [»] scaffold0479 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 33811024 - 33810798
Alignment:
| Q |
1 |
aatagagaacataactttcttgattctggcctaactcttgtaggaatttcttcatccacatcatctccttacaaccttcagtgattgcgatgtactctgc |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
33811024 |
aatagagaacataaatttcttgattctggcctaactcttgcaggaacttcttcatccacatcatctccttacagccttcagtgattgcgatgtactctgc |
33810925 |
T |
|
| Q |
101 |
ttctgtggtacttaaagcaacgcacttttgtagtcgcgattgccatgagacagctccccctgcaaaagtaatcaaatatccagatgtagattttcttgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33810924 |
ttctgtggtacttaaagcaacgcacttttgtagtcgagattgccatgagacagctccccctgcaaaagtaatcaaatatccagatgtagattttcttgaa |
33810825 |
T |
|
| Q |
201 |
tctacatctccggccatatcagcatct |
227 |
Q |
| |
|
|||| |||||||||||||||||||||| |
|
|
| T |
33810824 |
tctatatctccggccatatcagcatct |
33810798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 33815942 - 33815716
Alignment:
| Q |
1 |
aatagagaacataactttcttgattctggcctaactcttgtaggaatttcttcatccacatcatctccttacaaccttcagtgattgcgatgtactctgc |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
33815942 |
aatagagaacataaatttcttgattctggcctaactcttgcaggaacttcttcatccacatcatctccttacagccttcagtgattgcgatgtactctgc |
33815843 |
T |
|
| Q |
101 |
ttctgtggtacttaaagcaacgcacttttgtagtcgcgattgccatgagacagctccccctgcaaaagtaatcaaatatccagatgtagattttcttgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33815842 |
ttctgtggtacttaaagcaacgcacttttgtagtcgagattgccatgagacagctccccctgcaaaagtaatcaaatatccagatgtagattttcttgaa |
33815743 |
T |
|
| Q |
201 |
tctacatctccggccatatcagcatct |
227 |
Q |
| |
|
|||| |||||||||||||||||||||| |
|
|
| T |
33815742 |
tctatatctccggccatatcagcatct |
33815716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 4836439 - 4836665
Alignment:
| Q |
1 |
aatagagaacataactttcttgattctggcctaactcttgtaggaatttcttcatccacatcatctccttacaaccttcagtgattgcgatgtactctgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| || ||||||||||| | |||||||||||||||||||||||||||||||| || || |
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|
| T |
4836439 |
aatagagaacataactttcttgattctggcataactcttgtagaaacttcttcatccataggatctccttacaaccttcagtgattgcgatgtattcagc |
4836538 |
T |
|
| Q |
101 |
ttctgtggtacttaaagcaacgcacttttgtagtcgcgattgccatgagacagctccccctgcaaaagtaatcaaatatccagatgtagattttcttgaa |
200 |
Q |
| |
|
||| |||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
4836539 |
ttccgtggtactcaaagcaatgcacttttgtaatcgcgattgccatgagacagctccccctgcaaaagtaatcaaatatccggatgtagattttcttgaa |
4836638 |
T |
|
| Q |
201 |
tctacatctccggccatatcagcatct |
227 |
Q |
| |
|
|| ||||||||||||||||||| |||| |
|
|
| T |
4836639 |
tccacatctccggccatatcagtatct |
4836665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 54968105 - 54968331
Alignment:
| Q |
1 |
aatagagaacataactttcttgattctggcctaactcttgtaggaatttcttcatccacatcatctccttacaaccttcagtgattgcgatgtactctgc |
100 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||| || || |
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|
| T |
54968105 |
aatagagaacataactttcttgactttggcctaactcttgcaggaacttcttcatccacaggatctccttacaaccttcagtgattgcgatgtattcagc |
54968204 |
T |
|
| Q |
101 |
ttctgtggtacttaaagcaacgcacttttgtagtcgcgattgccatgagacagctccccctgcaaaagtaatcaaatatccagatgtagattttcttgaa |
200 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||||||| || ||||||||||| ||| |
|
|
| T |
54968205 |
ttctgtggtactcaaagcaatgcacttttgtaatcgtgattgccatgaaacagctccccctgcaaaagtgatcaaatatccggaagtagattttctggaa |
54968304 |
T |
|
| Q |
201 |
tctacatctccggccatatcagcatct |
227 |
Q |
| |
|
||||||||||| |||||||| |||||| |
|
|
| T |
54968305 |
tctacatctcctgccatatctgcatct |
54968331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 2042 - 1816
Alignment:
| Q |
1 |
aatagagaacataactttcttgattctggcctaactcttgtaggaatttcttcatccacatcatctccttacaaccttcagtgattgcgatgtactctgc |
100 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||| || || |
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|
| T |
2042 |
aatagagaacatagctttcttgattttggcctaactcttgtaggaacttcttcatccataggatctccttacaaccttcagtgattgcgatgtattcagc |
1943 |
T |
|
| Q |
101 |
ttctgtggtacttaaagcaacgcacttttgtagtcgcgattgccatgagacagctccccctgcaaaagtaatcaaatatccagatgtagattttcttgaa |
200 |
Q |
| |
|
|| |||||||| ||||||| ||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||||||| || ||||||||||| ||| |
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|
| T |
1942 |
tttcgtggtactcaaagcaatgcacttttgtaatcgtgattgccatgaaacagctccccctgcaaaagtgatcaaatatccggaagtagattttctggaa |
1843 |
T |
|
| Q |
201 |
tctacatctccggccatatcagcatct |
227 |
Q |
| |
|
||||||||||| |||||||| |||||| |
|
|
| T |
1842 |
tctacatctcctgccatatctgcatct |
1816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 22982034 - 22982260
Alignment:
| Q |
1 |
aatagagaacataactttcttgattctggcctaactcttgtaggaatttcttcatccacatcatctccttacaaccttcagtgattgcgatgtactctgc |
100 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||| |||||| || || |
|
|
| T |
22982034 |
aatagagaacatagcttttttgattctggcctaactcttgcaggaacttcttcatccacatgatctccttacaaccttcagtgattgtgatgtattcagc |
22982133 |
T |
|
| Q |
101 |
ttctgtggtacttaaagcaacgcacttttgtagtcgcgattgccatgagacagctccccctgcaaaagtaatcaaatatccagatgtagattttcttgaa |
200 |
Q |
| |
|
|||| ||||||| ||||||||||| ||||||||||| |||||||| |||| |||||||||||||||||||||||||||||| | || |||||||| ||| |
|
|
| T |
22982134 |
ttctatggtactcaaagcaacgcatttttgtagtcgtgattgccaagagatagctccccctgcaaaagtaatcaaatatccttaagtcgattttctggaa |
22982233 |
T |
|
| Q |
201 |
tctacatctccggccatatcagcatct |
227 |
Q |
| |
|
||||||||||| |||||||| |||||| |
|
|
| T |
22982234 |
tctacatctcctgccatatctgcatct |
22982260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 23806374 - 23806148
Alignment:
| Q |
1 |
aatagagaacataactttcttgattctggcctaactcttgtaggaatttcttcatccacatcatctccttacaaccttcagtgattgcgatgtactctgc |
100 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||| |||||| || || |
|
|
| T |
23806374 |
aatagagaacatagcttttttgattctggcctaactcttgcaggaacttcttcatccacatgatctccttacaaccttcagtgattgtgatgtattcagc |
23806275 |
T |
|
| Q |
101 |
ttctgtggtacttaaagcaacgcacttttgtagtcgcgattgccatgagacagctccccctgcaaaagtaatcaaatatccagatgtagattttcttgaa |
200 |
Q |
| |
|
|||| ||||||| ||||||||||| ||||||||||| |||||||| |||| |||||||||||||||||||||||||||||| | || |||||||| ||| |
|
|
| T |
23806274 |
ttctatggtactcaaagcaacgcatttttgtagtcgtgattgccaagagatagctccccctgcaaaagtaatcaaatatccttaagtcgattttctggaa |
23806175 |
T |
|
| Q |
201 |
tctacatctccggccatatcagcatct |
227 |
Q |
| |
|
||||||||||| |||||||| |||||| |
|
|
| T |
23806174 |
tctacatctcctgccatatctgcatct |
23806148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 89 - 221
Target Start/End: Original strand, 25004185 - 25004317
Alignment:
| Q |
89 |
gatgtactctgcttctgtggtacttaaagcaacgcacttttgtagtcgcgattgccatgagacagctccccctgcaaaagtaatcaaatatccagatgta |
188 |
Q |
| |
|
|||||| | |||||||||||||||||||||||| ||||||||||||| || |||||||||| |||| |||| ||||||||||||||||||| ||| | |
|
|
| T |
25004185 |
gatgtattatgcttctgtggtacttaaagcaacacacttttgtagtcatgacatccatgagacaactccacctgtaaaagtaatcaaatatccaaatgca |
25004284 |
T |
|
| Q |
189 |
gattttcttgaatctacatctccggccatatca |
221 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||| |
|
|
| T |
25004285 |
gatttccttgaatctacatctcccgccatatca |
25004317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 25003704 - 25003790
Alignment:
| Q |
1 |
aatagagaacataactttcttgattctggcctaactcttgtaggaatttcttcatccacatcatctccttacaaccttcagtgattg |
87 |
Q |
| |
|
||||| |||||||||||| ||||||| ||||| ||||||| | ||| |||||||||||| |||||||||||||| | |||||||| |
|
|
| T |
25003704 |
aatagggaacataactttgttgattcaggcctgactcttgcatgaacttcttcatccacgggatctccttacaaccgttagtgattg |
25003790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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