View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18880_high_1 (Length: 590)
Name: NF18880_high_1
Description: NF18880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18880_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 531; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 17 - 571
Target Start/End: Original strand, 28859526 - 28860080
Alignment:
| Q |
17 |
ctctctctgcgaggtaaagttgaacaaaataaactatatgttctgtaactgtgaaaacttgtctaaggactcaaattttctatctggccttgcacgagaa |
116 |
Q |
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| T |
28859526 |
ctctctctgcgaggtaaaattgaacaaaataaactatatgttctgtaactttgaaaacttgtctaaggactcaaattttctatctggccttgcacgagaa |
28859625 |
T |
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| Q |
117 |
cgtgtctctgaatctaaaattcttgtttttaaagtttcaaccattagattaatccaatgactgattttactagagagatagaaggggtggtaggtggagg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
28859626 |
cgtgtctctgaatctaaaattcttgtttttaaagtttcgaccattagattaatccaatgactgattttactagagagatagaaggggtggtagatggagg |
28859725 |
T |
|
| Q |
217 |
atacgtgtgcattatgttaatgttctttccaacaattcattcaacttttgtccacttctatattttggataaatgtaatcaatgacaaccaaccacctat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28859726 |
atacgtgtgcattatgttaatgttctttccaacaattcattcaacttttgtccacttctatattttggataaatgtaatcaatgacaaccaaccacctat |
28859825 |
T |
|
| Q |
317 |
tggatggactatgttatgtaagatattaatttgtggttagaattaaatgaggaatctattcatctagatattcaaactatacatccaaaactcattaaca |
416 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28859826 |
tggatgtactatgttatgtaagatattaatttgtggttagaattaaatgaggaatctattcatctagatattcaaactatacatccaaaactcattaaca |
28859925 |
T |
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| Q |
417 |
tgttaaggattacatcaaaactctttctttttgcaccaaacttcacttcctcatcttattattgtaaaaacaatggttgcttttgctactcttcaaggcc |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28859926 |
tgttaaggattacatcaaaactctttctttttgcaccaaacttcacttcctcatcttattattgtaaaaacaatggttgcttttgctactcttcaaggcc |
28860025 |
T |
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| Q |
517 |
ttcatggctctctcctacgatcccaattcctaggccaagatcaccacttcgctct |
571 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28860026 |
ttcatggctctctcctacgatcccaattcctaggccaagatcaccacttcactct |
28860080 |
T |
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