View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18880_high_11 (Length: 228)

Name: NF18880_high_11
Description: NF18880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18880_high_11
NF18880_high_11
[»] chr5 (3 HSPs)
chr5 (105-210)||(41361370-41361477)
chr5 (36-205)||(34153983-34154151)
chr5 (84-198)||(41038126-41038243)
[»] chr4 (4 HSPs)
chr4 (82-188)||(6800276-6800384)
chr4 (71-153)||(6804677-6804761)
chr4 (165-210)||(6800228-6800273)
chr4 (137-196)||(1393073-1393132)
[»] chr2 (2 HSPs)
chr2 (71-201)||(13310513-13310646)
chr2 (71-175)||(10038612-10038712)
[»] chr3 (2 HSPs)
chr3 (136-187)||(53833602-53833653)
chr3 (83-114)||(53833564-53833595)
[»] chr1 (3 HSPs)
chr1 (36-115)||(21431081-21431156)
chr1 (146-203)||(21431011-21431068)
chr1 (146-210)||(2114891-2114955)
[»] scaffold0635 (1 HSPs)
scaffold0635 (71-175)||(8358-8458)


Alignment Details
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 105 - 210
Target Start/End: Original strand, 41361370 - 41361477
Alignment:
Q  105 agtgttagtgagaagagctgttgtatcctggag--cactagtcttgaggccaactgcatcacgtgattgacctgtggcggcgaaatgctcttaagcccag 202  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41361370 agtgttagtgagaagagctgttgtatcctggagagcactagtcttgaggccaactgcatcaggtgattgacctgtggcggcgaaatgctcttaagcccag 41361469  T
Q  203 tgcgtttg 210  Q
    ||||||||    
T  41361470 tgcgtttg 41361477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 36 - 205
Target Start/End: Complemental strand, 34154151 - 34153983
Alignment:
Q  36 caaataacaattaagttcccatgagcgcatccaatatagttgttcctgtgcccttgctatttcacgtgcagtgttagtgagaagag-ctgttgtatcctg 134  Q
    ||||||||||||||||||||||||||  ||||||||  || |||||||||||||||||  |||||||||||||||||||| ||| | |||||||||||||    
T  34154151 caaataacaattaagttcccatgagc--atccaata--gtggttcctgtgcccttgctggttcacgtgcagtgttagtgaaaagtggctgttgtatcctg 34154056  T
Q  135 gag--cactagtcttgaggccaactgcatcacgtgattgacctgtggcggcgaaatgctcttaagcccagtgc 205  Q
    |||  ||||||  |||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||    
T  34154055 gagagcactagctttgaggccaactgcatcaggtcattgacctgtggtggcgaaatgctcttaagcccagtgc 34153983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 84 - 198
Target Start/End: Complemental strand, 41038243 - 41038126
Alignment:
Q  84 tgcccttgctatttcacgtgcagtgttagtgagaagag-ctgttgtatcctg--gagcactagtcttgaggccaactgcatcacgtgattgacctgtggc 180  Q
    ||||||||||| || |||||||||||||| |||||| | |||||||||||||  |||||||||  ||||||||||||| |||| || |||||| |||||     
T  41038243 tgcccttgctagttaacgtgcagtgttagcgagaagtggctgttgtatcctgaagagcactagctttgaggccaactgtatcaggtcattgacatgtggt 41038144  T
Q  181 ggcgaaatgctcttaagc 198  Q
    ||||||||||||||||||    
T  41038143 ggcgaaatgctcttaagc 41038126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 82 - 188
Target Start/End: Complemental strand, 6800384 - 6800276
Alignment:
Q  82 tgtgcccttgctatttcacgtgcagtgttagtgagaagagctgttgtatcctg--gagcactagtcttgaggccaactgcatcacgtgattgacctgtgg 179  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||    
T  6800384 tgtgcccttgctatttcacgtgcagtgttagtgaggagagctgttgtatcctggagagcactagtcttgaggccaactgcatcaggtgattgacctgtgg 6800285  T
Q  180 cggcgaaat 188  Q
    |||||||||    
T  6800284 cggcgaaat 6800276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 71 - 153
Target Start/End: Complemental strand, 6804761 - 6804677
Alignment:
Q  71 atagttgttcctgtgcccttgctatttcacgtgcagtgttagtgagaagagctgttgtatcctg--gagcactagtcttgaggcc 153  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||| ||||||||||    
T  6804761 atagttgttcccgtgcccttgctatttcacgtgcagtgttagtgagaagagctgttgtattctggagagcactaatcttgaggcc 6804677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 6800273 - 6800228
Alignment:
Q  165 gtgattgacctgtggcggcgaaatgctcttaagcccagtgcgtttg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  6800273 gtgattgacctgtggcggcgaaatgctcttaagcccagtgcgtttg 6800228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 196
Target Start/End: Complemental strand, 1393132 - 1393073
Alignment:
Q  137 gcactagtcttgaggccaactgcatcacgtgattgacctgtggcggcgaaatgctcttaa 196  Q
    |||||||  |||||||||||||||| | ||||||||| ||||| ||||||||||||||||    
T  1393132 gcactagctttgaggccaactgcattaggtgattgacatgtggtggcgaaatgctcttaa 1393073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 71 - 201
Target Start/End: Complemental strand, 13310646 - 13310513
Alignment:
Q  71 atagttgttcctgtgcccttgctatttcacgtgcagtgttagtgagaagag-ctgttgtatcctggag--cactagtcttgaggccaactgcatcacgtg 167  Q
    ||||| |||| ||||||||| ||| |||||||| ||||||||||||| | | ||||| |||||| |||  | ||||  |||||||||||||||||| |||    
T  13310646 atagtggttcatgtgcccttactaattcacgtgtagtgttagtgagaggtggctgttttatcctagagagcgctagctttgaggccaactgcatcaggtg 13310547  T
Q  168 attgacctgtggcggcgaaatgctcttaagccca 201  Q
    |||||||||||| || ||||||||||||||||||    
T  13310546 attgacctgtggtggtgaaatgctcttaagccca 13310513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 175
Target Start/End: Original strand, 10038612 - 10038712
Alignment:
Q  71 atagttgttcctgtgcccttgctatttcacgtgcagtgttagtgagaagagctgttgtatcctg--gagcactagtcttgaggccaactgcatcacgtga 168  Q
    |||||||||| ||||||||| ||| |||||||||||||||||||      | ||||||||| ||  ||| |||||  |||||||||||| ||||| ||||    
T  10038612 atagttgttcatgtgcccttactagttcacgtgcagtgttagtg------gttgttgtatcgtggagagtactagctttgaggccaactacatcaagtga 10038705  T
Q  169 ttgacct 175  Q
    |||||||    
T  10038706 ttgacct 10038712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 53833602 - 53833653
Alignment:
Q  136 agcactagtcttgaggccaactgcatcacgtgattgacctgtggcggcgaaa 187  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  53833602 agcactagtcttgaggccaactgcatcaggtgattgacctgtggcggcgaaa 53833653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 114
Target Start/End: Original strand, 53833564 - 53833595
Alignment:
Q  83 gtgcccttgctatttcacgtgcagtgttagtg 114  Q
    ||||||||||||||||||||||||||||||||    
T  53833564 gtgcccttgctatttcacgtgcagtgttagtg 53833595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 21431156 - 21431081
Alignment:
Q  36 caaataacaattaagttcccatgagcgcatccaatatagttgttcctgtgcccttgctatttcacgtgcagtgttagtga 115  Q
    ||||||||||||||||||||||||||  |||||| |  || |||||||||||||||||| ||||| | ||||||||||||    
T  21431156 caaataacaattaagttcccatgagc--atccaaga--gtggttcctgtgcccttgctagttcacatacagtgttagtga 21431081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 203
Target Start/End: Complemental strand, 21431068 - 21431011
Alignment:
Q  146 ttgaggccaactgcatcacgtgattgacctgtggcggcgaaatgctcttaagcccagt 203  Q
    |||||||||||||||||| || |||||||||||  | ||||||||||||||| |||||    
T  21431068 ttgaggccaactgcatcaggtcattgacctgtgatgacgaaatgctcttaagtccagt 21431011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 2114955 - 2114891
Alignment:
Q  146 ttgaggccaactgcatcacgtgattgacctgtggcggcgaaatgctcttaagcccagtgcgtttg 210  Q
    |||||| ||||||||||| | ||||||| | || |||||||||||||||||||||| || |||||    
T  2114955 ttgaggtcaactgcatcaggcgattgacatatgtcggcgaaatgctcttaagcccaatgtgtttg 2114891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0635 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0635
Description:

Target: scaffold0635; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 175
Target Start/End: Complemental strand, 8458 - 8358
Alignment:
Q  71 atagttgttcctgtgcccttgctatttcacgtgcagtgttagtgagaagagctgttgtatcctg--gagcactagtcttgaggccaactgcatcacgtga 168  Q
    |||||||||| ||||||||| ||| |||||||||||||||||||      | ||||||||| ||  ||| |||||  |||||||||||| ||||| ||||    
T  8458 atagttgttcatgtgcccttactagttcacgtgcagtgttagtg------gttgttgtatcgtggagagtactagctttgaggccaactacatcaagtga 8365  T
Q  169 ttgacct 175  Q
    |||||||    
T  8364 ttgacct 8358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University