View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18880_high_3 (Length: 378)
Name: NF18880_high_3
Description: NF18880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18880_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 10 - 363
Target Start/End: Complemental strand, 44751332 - 44750979
Alignment:
| Q |
10 |
ataatactaacataatgcaataatctggttgcaggggagatgcaggaaacttgttggaacattttctgcaactgatttaaggggatgctatataaacaca |
109 |
Q |
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| T |
44751332 |
ataatactaacataatgcaataatctggttgcaggggagatgcaggaaacttgttggaacattttctgcaactgatttaaggggatgctatataaacaca |
44751233 |
T |
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| Q |
110 |
ttgaaatcatggttaggaataagtgcacttgcattcactgaacaaattgcaactagtcctttgtacacaacatcagatacacagaatgatattggtactc |
209 |
Q |
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| T |
44751232 |
ttgaaatcatggttaggaataagtgcacttgcattcactgaacaaattgcaactagtcctttgtacacaacatcagatacacagaatgatattggtactc |
44751133 |
T |
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| Q |
210 |
ctaaaagggagcttgtgacatgctatgctgaatcaactttgtccgaggtaatcgacaaggcggtcacaaaccatgttcatcgagtttgggtggttgatca |
309 |
Q |
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| T |
44751132 |
ctaaaagggagcttgtgacatgctatgctgaatcaactttgtccgaggtaatcgacaaggcggtcgcaaaccatgttcatcgagtttgggtggttgatca |
44751033 |
T |
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| Q |
310 |
agagggtttgcttgttggtgttgtgtctctcactgatgtaatcagagttataag |
363 |
Q |
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| T |
44751032 |
agagggtttgcttgttggtgttgtgtctctcactgatgtaatcagagttataag |
44750979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 106 - 363
Target Start/End: Complemental strand, 44744596 - 44744339
Alignment:
| Q |
106 |
cacattgaaatcatggttaggaataagtgcacttgcattcactgaacaaattgcaactagtcctttgtacacaacatcagatacacagaatgatattggt |
205 |
Q |
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| T |
44744596 |
cacattgaaatcatggttgggaacaagtgcactagcttttactaaacaaattgcaacaagtcctttgtacacaacatctgatacacataatgatattggt |
44744497 |
T |
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| Q |
206 |
actcctaaaagggagcttgtgacatgctatgctgaatcaactttgtccgaggtaatcgacaaggcggtcacaaaccatgttcatcgagtttgggtggttg |
305 |
Q |
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||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||| |
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| T |
44744496 |
actcctagaagggagcttgtgacatgccatgctgaataaactttgtccgaggtaatcaataaggcggtcgcaaaccatgttcatcgagtttgggtggttg |
44744397 |
T |
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| Q |
306 |
atcaagagggtttgcttgttggtgttgtgtctctcactgatgtaatcagagttataag |
363 |
Q |
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| T |
44744396 |
atcaagagggtttgcttgtaggtgttgtgtctctcactgatgtcattagagttataag |
44744339 |
T |
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