View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18880_high_5 (Length: 304)
Name: NF18880_high_5
Description: NF18880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18880_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 5 - 288
Target Start/End: Original strand, 31141755 - 31142037
Alignment:
| Q |
5 |
caagagtgataagagggaactttattagttgaagcatgaatatctttcctaacattttgaaatatgcctttgtttctgttccgccaaatctctcagaatg |
104 |
Q |
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| T |
31141755 |
caagagtgataagagagaactttattagttgaagcatgaatatctttcctaacattttgaaatatgtctttgtttctgttccgccaaatctatcagaatg |
31141854 |
T |
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| Q |
105 |
ttacaataaaaagtagtcacgtcgtaatagaagcatgatactcaaaccaaaacttcaataaatattcataaatatataaaatcatcgaaatggaacgaac |
204 |
Q |
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||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31141855 |
ttacaataaaaagtagtcatgtcataatagaagcatgatactcaaaccaaaacttcaataaatattcataaatatataaaatcatcgaaatggaacgaac |
31141954 |
T |
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| Q |
205 |
atacctttaggtgggcattacattagagaaatcacaaaaagtatgcatatcgtcctcaacaactgttccacacctacgacacat |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||| |
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| T |
31141955 |
atacctttaggtgggcattacattagagaaatcacaaaaagtatgcatatcat-ctcaacaactgtaccacacctacgacacat |
31142037 |
T |
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