View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18880_high_6 (Length: 271)

Name: NF18880_high_6
Description: NF18880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18880_high_6
NF18880_high_6
[»] chr2 (5 HSPs)
chr2 (19-271)||(38581878-38582130)
chr2 (19-264)||(38617368-38617613)
chr2 (19-264)||(38563677-38563931)
chr2 (19-189)||(38606566-38606736)
chr2 (212-264)||(38606485-38606534)


Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 38582130 - 38581878
Alignment:
Q  19 atgaagaagtgaatcaccagtcaaagaagaatttgaagaaataacctcaacgttctcttcatgcagtattctcataatttcacagaaaataaaatgttca 118  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38582130 atgaagaagtgaatcaccagttaaagaagaatttgaagaaataacctcaacgttctcttcatgcagtattctcataatttcacagaaaataaaatgttca 38582031  T
Q  119 tcaaccccacatgttacaatcacttgtagagtgggtcccatttcatgaatttctattttcggaaactttattatgcttccttttgctccataatcaccac 218  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||    
T  38582030 tcaaccccacatgttacaatcacttgtagagtggatcccatttcatgaatttctatttttggcaactttattatgcttccttttgctccataaccaccac 38581931  T
Q  219 gtggtctcttcttgtttcccattaaactttctttcttctcctttgcacccttt 271  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38581930 gtgatctcttcttgtttcccattaaactttctttcttctcctttgcacccttt 38581878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 264
Target Start/End: Original strand, 38617368 - 38617613
Alignment:
Q  19 atgaagaagtgaatcaccagtcaaagaagaatttgaagaaataacctcaacgttctcttcatgcagtattctcataatttcacagaaaataaaatgttca 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  38617368 atgaagaagtgaatcaccagtcaaagaagaatttgaagaaataacctcaacgttctcttcatgcagtattctcataatttcacagaaaataaaatgttta 38617467  T
Q  119 tcaaccccacatgttacaatcacttgtagagtgggtcccatttcatgaatttctattttcggaaactttattatgcttccttttgctccataatcaccac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||    
T  38617468 tcaaccccacatgttacaatcacttgtagagtgggtcccatttcatgaatttctatttttggcaactttattatgcttccttttgctccataaccaccac 38617567  T
Q  219 gtggtctcttcttgtttcccattaaactttctttcttctcctttgc 264  Q
    ||| |||||||||||||||||||||||||||||| |||||||||||    
T  38617568 gtgatctcttcttgtttcccattaaactttcttttttctcctttgc 38617613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 19 - 264
Target Start/End: Complemental strand, 38563931 - 38563677
Alignment:
Q  19 atgaagaagtgaatcaccagtcaaagaagaatttgaagaaataacctcaacgttctcttcatgcagtattctcataatttcacagaaaataaaatgttca 118  Q
    |||||||||||||||||| | |||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38563931 atgaagaagtgaatcaccggccaaagaagaatttgaagagataacatcgacgttctcttcatgcagtattctcataatttcacagaaaataaaatgttca 38563832  T
Q  119 tcaaccccacatgttacaatcacttgtagagtgggtcccatttcatgaatttctattttcggaaactttattatgcttccttttgctccataa------- 211  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || ||||    |||||||||||| |||||||||           
T  38563831 tcaaccccacatgttacaatcacttgtagagtgggtcctatttcatgaatctctatttttggcaact---ctatgcttcctttcgctccataagaactcg 38563735  T
Q  212 -----tcaccacgtggtctcttcttgtttcccattaaactttctttcttctcctttgc 264  Q
          ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  38563734 accagccaccacgtgatctcttcttgtttcccattaaactttctttcttctcctttgc 38563677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 38606736 - 38606566
Alignment:
Q  19 atgaagaagtgaatcaccagtcaaagaagaatttgaagaaataacctcaacgttctcttcatgcagtattctcataatttcacagaaaataaaatgttca 118  Q
    ||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38606736 atgaagaagtgaatggccagtcaaagaagtatttgaagaaataacctcaacgttctcttcatgcagtattctcataatttcacagaaaataaaatgttca 38606637  T
Q  119 tcaaccccacatgttacaatcacttgtagagtgggtcccatttcatgaatttctattttcggaaactttat 189  Q
    |||||||||||||||||||| | |||||||||||||||||||||||| || |||||||| || ||||||||    
T  38606636 tcaaccccacatgttacaattatttgtagagtgggtcccatttcatggatctctatttttggcaactttat 38606566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 264
Target Start/End: Complemental strand, 38606534 - 38606485
Alignment:
Q  212 tcaccacgtggtctcttcttgtttcccattaaactttctttcttctcctttgc 264  Q
    |||||||||| ||||||   ||||||||||||||||||||| |||||||||||    
T  38606534 tcaccacgtgatctctt---gtttcccattaaactttcttttttctcctttgc 38606485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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