View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18880_low_2 (Length: 521)
Name: NF18880_low_2
Description: NF18880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18880_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 406; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 20 - 508
Target Start/End: Original strand, 37483657 - 37484145
Alignment:
| Q |
20 |
atgaatctgattttggttatgtacgaacccaagcaagcttggacaaacttctgggtgtagtgaattaaatgtggtgtttatgtagatggtatatttgcta |
119 |
Q |
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| T |
37483657 |
atgaatctgattttggttatgtacaaacccaagcaagcccggacaaacttctgggtgtagtgaattaaatgtggtgtttatgtagatagtatatttgcta |
37483756 |
T |
|
| Q |
120 |
gaaaatttgggattttaacatcgcatgtcatgttatttcagaccaacgaatgtcactaacactaatgttttgtcatttatctttataatcagatgacatt |
219 |
Q |
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| T |
37483757 |
gaaaatttgggattttaacgtcgcatgtcatgttatttcacaccaacgaatgtcactaacactaatgttt-gtcatttatctttataatcggatgacatt |
37483855 |
T |
|
| Q |
220 |
tcccaacgcttgatatgaatatatgcaagtcttgaatccaatagtttcatttgtttcttaatttgaggcacacaatacattaaattgcttcggacaagag |
319 |
Q |
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| T |
37483856 |
tcccaacgcttgatatgaatatatgtaagtcttgaatccaatagtttcatttgtttcttaatttgagccacaccgtacattaaattgcttaggacaagag |
37483955 |
T |
|
| Q |
320 |
atatcatttctcattttcggaatactgaacatttgaggcaa-ttgtcttattacacactagtgagaaatggatattaagcgaggaagagttcttactgtt |
418 |
Q |
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| T |
37483956 |
atatcatttctcatttttggaatactgaacatttgaggcaatttgtcttattacacactagtgagaaatggatattaagcgaggaagaggtcttactgtt |
37484055 |
T |
|
| Q |
419 |
agccattacatgaaaatgaagtgcttagaataaaacatcatttataattgcaaatactatagttgctaagcttcagccaatttttgtttc |
508 |
Q |
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| T |
37484056 |
agccattacatgaaaatgaagtgcttagaataaaacatcatttataattgataatactatagttgctaagcttcagccagtttttgtttc |
37484145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 20 - 503
Target Start/End: Original strand, 37474982 - 37475465
Alignment:
| Q |
20 |
atgaatctgattttggttatgtacgaacccaagcaagcttggacaaacttctgggtgtagtgaattaaatgtggtgtttatgtagatggtatatttgcta |
119 |
Q |
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|||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
37474982 |
atgaatctgattttggttatgtacaaacccaagctagcccggacaaacttctgggtgtagtgaattaaacgtggtgtttatgtagatagtatatttgcta |
37475081 |
T |
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| Q |
120 |
gaaaatttgggattttaacatcgcatgtcatgttatttcagaccaacgaatgtcactaacactaatgttttgtcatttatctttataatcagatgacatt |
219 |
Q |
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| T |
37475082 |
gaaaatttgggattttaacgtcgcatgtcatgttatttcacaccaacgaatgtcactaacactaatgttt-gtcatttatctttataatcggatgacatt |
37475180 |
T |
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| Q |
220 |
tcccaacgcttgatatgaatatatgcaagtcttgaatccaatagtttcatttgtttcttaatttgaggcacacaatacattaaattgcttcggacaagag |
319 |
Q |
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| T |
37475181 |
tcccaacgcttgatatgaatatatgcaagtcttgaatccaatagtttcatttgtttcttaatttgagctacaccgtacattaaattgcttcggacaagag |
37475280 |
T |
|
| Q |
320 |
atatcatttctcattttcggaatactgaacatttgaggcaa-ttgtcttattacacactagtgagaaatggatattaagcgaggaagagttcttactgtt |
418 |
Q |
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| T |
37475281 |
atatcatttctcatttttggaatactgaacatttgaggcaatttgtcttattacacactagtgagaaatggatattaagcgaggaagaggtcttactgtt |
37475380 |
T |
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| Q |
419 |
agccattacatgaaaatgaagtgcttagaataaaacatcatttataattgcaaatactatagttgctaagcttcagccaattttt |
503 |
Q |
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| T |
37475381 |
agccattacattaaaatgaagtgcttagaataaaacatcatttataattgataatactatagttgttaagcttcagccagttttt |
37475465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 37469812 - 37469865
Alignment:
| Q |
188 |
tttgtcatttatctttataatcagatgacatttcccaacgcttgatatgaatat |
241 |
Q |
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| T |
37469812 |
tttgtcatttacctatataatcggatgatatttcccaacgtttgatatgaatat |
37469865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 122
Target Start/End: Original strand, 37160880 - 37160920
Alignment:
| Q |
82 |
aattaaatgtggtgtttatgtagatggtatatttgctagaa |
122 |
Q |
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| T |
37160880 |
aattaaatatgatgtttatgtaggtggtatatttgctagaa |
37160920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 122
Target Start/End: Original strand, 37205427 - 37205467
Alignment:
| Q |
82 |
aattaaatgtggtgtttatgtagatggtatatttgctagaa |
122 |
Q |
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| T |
37205427 |
aattaaatatgatgtttatgtaggtggtatatttgctagaa |
37205467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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