View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18880_low_4 (Length: 333)

Name: NF18880_low_4
Description: NF18880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18880_low_4
NF18880_low_4
[»] chr2 (21 HSPs)
chr2 (1-197)||(38581681-38581877)
chr2 (197-321)||(38581529-38581653)
chr2 (3-103)||(38606375-38606475)
chr2 (3-161)||(38563512-38563667)
chr2 (3-62)||(38617623-38617682)
chr2 (210-276)||(30737042-30737108)
chr2 (219-285)||(34107344-34107410)
chr2 (219-275)||(17896888-17896944)
chr2 (223-272)||(33124337-33124386)
chr2 (202-275)||(44487736-44487809)
chr2 (223-275)||(25463235-25463287)
chr2 (219-275)||(35352373-35352429)
chr2 (223-277)||(26975266-26975320)
chr2 (219-284)||(39334841-39334906)
chr2 (247-275)||(5613056-5613084)
chr2 (220-276)||(6282306-6282362)
chr2 (246-274)||(10915522-10915550)
chr2 (223-275)||(23664043-23664095)
chr2 (202-273)||(34018043-34018112)
chr2 (219-255)||(34644474-34644510)
chr2 (247-275)||(36182744-36182772)
[»] chr4 (23 HSPs)
chr4 (218-284)||(30203322-30203389)
chr4 (218-275)||(21664147-21664204)
chr4 (218-275)||(21672911-21672968)
chr4 (3-55)||(30195414-30195466)
chr4 (219-275)||(49039414-49039470)
chr4 (219-274)||(20610809-20610864)
chr4 (219-275)||(33359887-33359943)
chr4 (220-284)||(54854139-54854203)
chr4 (219-262)||(18740898-18740941)
chr4 (220-259)||(27921967-27922006)
chr4 (220-255)||(39449470-39449505)
chr4 (221-274)||(8998347-8998400)
chr4 (219-273)||(41492470-41492524)
chr4 (219-275)||(21476052-21476106)
chr4 (220-273)||(23226676-23226729)
chr4 (223-268)||(33524220-33524265)
chr4 (219-275)||(36257764-36257818)
chr4 (202-263)||(47416521-47416582)
chr4 (247-275)||(8965196-8965224)
chr4 (219-259)||(21023337-21023377)
chr4 (247-275)||(30057324-30057352)
chr4 (247-275)||(36132331-36132359)
chr4 (220-275)||(49280640-49280693)
[»] chr7 (20 HSPs)
chr7 (198-268)||(41000809-41000879)
chr7 (247-283)||(3766913-3766949)
chr7 (219-275)||(10958103-10958159)
chr7 (219-275)||(44409270-44409326)
chr7 (219-284)||(1649222-1649287)
chr7 (202-267)||(32309125-32309190)
chr7 (202-283)||(32814880-32814961)
chr7 (234-283)||(48053235-48053284)
chr7 (219-275)||(5773201-5773257)
chr7 (219-284)||(29658234-29658297)
chr7 (202-284)||(36315934-36316016)
chr7 (220-273)||(3481140-3481193)
chr7 (219-275)||(11808108-11808165)
chr7 (202-275)||(25711101-25711173)
chr7 (219-284)||(26734232-26734296)
chr7 (218-275)||(28555820-28555877)
chr7 (218-275)||(42976569-42976626)
chr7 (216-268)||(7162644-7162696)
chr7 (219-275)||(10020438-10020494)
chr7 (245-277)||(17900848-17900880)
[»] chr8 (18 HSPs)
chr8 (202-275)||(220331-220404)
chr8 (202-275)||(689486-689559)
chr8 (202-275)||(733954-734027)
chr8 (202-275)||(857850-857923)
chr8 (202-262)||(14011020-14011080)
chr8 (219-279)||(16808325-16808385)
chr8 (247-284)||(43085154-43085191)
chr8 (218-281)||(29653123-29653187)
chr8 (220-275)||(39208838-39208893)
chr8 (218-280)||(22438548-22438610)
chr8 (247-284)||(11875988-11876025)
chr8 (247-284)||(11890995-11891032)
chr8 (215-252)||(26773694-26773731)
chr8 (218-258)||(4604339-4604379)
chr8 (219-275)||(18123931-18123987)
chr8 (247-283)||(29514728-29514764)
chr8 (247-275)||(34413164-34413192)
chr8 (247-275)||(35818161-35818189)
[»] chr5 (14 HSPs)
chr5 (219-284)||(3535896-3535961)
chr5 (218-263)||(17137848-17137893)
chr5 (220-273)||(18535985-18536038)
chr5 (202-275)||(34325318-34325391)
chr5 (219-275)||(8934851-8934907)
chr5 (219-267)||(37986844-37986892)
chr5 (219-274)||(36116850-36116904)
chr5 (219-258)||(39684308-39684347)
chr5 (219-268)||(20186934-20186983)
chr5 (218-275)||(27006409-27006466)
chr5 (219-279)||(13862194-13862254)
chr5 (247-279)||(22569181-22569213)
chr5 (219-263)||(22687862-22687906)
chr5 (219-275)||(28537205-28537261)
[»] scaffold0002 (1 HSPs)
scaffold0002 (219-275)||(440469-440525)
[»] chr1 (26 HSPs)
chr1 (219-275)||(38028607-38028663)
chr1 (219-280)||(195114-195175)
chr1 (219-280)||(2643779-2643840)
chr1 (246-287)||(3269712-3269753)
chr1 (219-284)||(9768769-9768834)
chr1 (219-284)||(9931157-9931222)
chr1 (219-275)||(3341705-3341761)
chr1 (219-275)||(9769549-9769605)
chr1 (219-275)||(12553264-12553320)
chr1 (219-275)||(19866545-19866601)
chr1 (223-275)||(23758221-23758273)
chr1 (247-283)||(33033228-33033264)
chr1 (219-275)||(48260158-48260214)
chr1 (223-275)||(50147598-50147650)
chr1 (220-275)||(1721211-1721266)
chr1 (219-274)||(2902997-2903052)
chr1 (215-254)||(3261924-3261963)
chr1 (218-275)||(4069581-4069636)
chr1 (219-257)||(4511512-4511550)
chr1 (222-275)||(7906294-7906348)
chr1 (220-282)||(9163354-9163415)
chr1 (219-276)||(13941389-13941446)
chr1 (219-268)||(23973458-23973507)
chr1 (219-263)||(23750220-23750264)
chr1 (219-263)||(41677130-41677174)
chr1 (247-287)||(48497170-48497210)
[»] chr3 (19 HSPs)
chr3 (219-280)||(28951936-28951997)
chr3 (219-274)||(33533273-33533328)
chr3 (218-275)||(43911675-43911732)
chr3 (247-284)||(44764501-44764538)
chr3 (223-275)||(4009987-4010039)
chr3 (220-284)||(6054185-6054249)
chr3 (219-267)||(40160805-40160853)
chr3 (247-279)||(46798680-46798712)
chr3 (202-285)||(50724420-50724501)
chr3 (245-275)||(3993676-3993706)
chr3 (202-275)||(50788357-50788428)
chr3 (218-267)||(8724841-8724889)
chr3 (218-267)||(9076728-9076776)
chr3 (219-283)||(28206500-28206562)
chr3 (247-275)||(16141322-16141350)
chr3 (247-275)||(32429849-32429877)
chr3 (219-279)||(36842232-36842292)
chr3 (223-275)||(40956656-40956708)
chr3 (219-267)||(47497148-47497196)
[»] chr6 (20 HSPs)
chr6 (246-283)||(15963875-15963912)
chr6 (220-268)||(4844214-4844262)
chr6 (219-275)||(17305587-17305642)
chr6 (220-275)||(3243887-3243942)
chr6 (219-273)||(3037560-3037614)
chr6 (246-280)||(25045841-25045875)
chr6 (246-287)||(978064-978105)
chr6 (247-284)||(13732913-13732950)
chr6 (223-275)||(16119352-16119405)
chr6 (219-284)||(26669619-26669684)
chr6 (247-275)||(9888465-9888493)
chr6 (223-275)||(12291244-12291296)
chr6 (223-275)||(14948988-14949040)
chr6 (247-275)||(16913841-16913869)
chr6 (219-275)||(17347324-17347380)
chr6 (219-275)||(20149948-20150004)
chr6 (219-275)||(22182828-22182884)
chr6 (247-275)||(28222964-28222992)
chr6 (219-255)||(29204858-29204894)
chr6 (219-275)||(30668153-30668209)
[»] scaffold0366 (1 HSPs)
scaffold0366 (247-283)||(792-828)
[»] scaffold0118 (1 HSPs)
scaffold0118 (219-270)||(37302-37353)
[»] scaffold0119 (1 HSPs)
scaffold0119 (219-284)||(1109-1174)
[»] scaffold0038 (1 HSPs)
scaffold0038 (247-275)||(23462-23490)


Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 38581877 - 38581681
Alignment:
Q  1 agatttgtctctaggctctttatgtagtttatagcctcatctacttgatcaggtaatggtaacgctaattcctgcattacattagaaataacaccaaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38581877 agatttgtctctaggctctttatgtagtttatagcctcatctacttgatcaggtaatggtaacgctaattcctgcattacattagaaataacaccaaatt 38581778  T
Q  101 aatgtgatatataatgtcggtccaagaagaggtgacaatgtcacttaattagctaataataggaagatggtttcctcgtgagcataactcagttggt 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38581777 aatgtgatatataatgtcggtccaagaagaggtgacaatgtcacttaattagctaataataggaagatggtttcctcgtgagcataactcagttggt 38581681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 197 - 321
Target Start/End: Complemental strand, 38581653 - 38581529
Alignment:
Q  197 tgagattcgaatctcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaaataagaagatgag 296  Q
    ||||||||||| ||||| ||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  38581653 tgagattcgaacctcggacatcccacttattcatcttaaaaaaggtgtattctaaccactaggctacttgaccaaaaaataaataaaataagaagatgat 38581554  T
Q  297 tttcttatgtctatgttagtataat 321  Q
    |||||||||||||||||||||||||    
T  38581553 tttcttatgtctatgttagtataat 38581529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 3 - 103
Target Start/End: Complemental strand, 38606475 - 38606375
Alignment:
Q  3 atttgtctctaggctctttatgtagtttatagcctcatctacttgatcaggtaatggtaacgctaattcctgcattacattagaaataacaccaaattaa 102  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||    
T  38606475 atttgtctctagcctctttatgtagtttatagcctcatctacttgatcaggtaatggtaatgctaattcctgcattaaattaaaaataacaccaaattaa 38606376  T
Q  103 t 103  Q
    |    
T  38606375 t 38606375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 3 - 161
Target Start/End: Complemental strand, 38563667 - 38563512
Alignment:
Q  3 atttgtctctaggctctttatgtagtttatagcctcatctacttgatcaggtaatggtaacgctaattcctgcattacattagaaataacaccaaatta- 101  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||| || | ||||||||||||||||     
T  38563667 atttatctctaggctctttatatagtttatagcctcatctacttgatcaggtaacggtaacgctaattcctgtattaaatga-aaataacaccaaattaa 38563569  T
Q  102 -atgtgatatataatgtcggtccaagaagaggtgacaatgtcacttaattagctaataata 161  Q
     ||||| ||| | ||||||||||   ||||||||| | |||||||||||||| ||||||||    
T  38563568 tatgtgttat-tcatgtcggtcc---aagaggtgatagtgtcacttaattagttaataata 38563512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 38617623 - 38617682
Alignment:
Q  3 atttgtctctaggctctttatgtagtttatagcctcatctacttgatcaggtaatggtaa 62  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  38617623 atttgtctctaggctctttatgtagtttatagcctcgtcgacttgatcaggtaatggtaa 38617682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 276
Target Start/End: Original strand, 30737042 - 30737108
Alignment:
Q  210 tcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaat 276  Q
    |||| ||| ||||||||||||||||||||||||| ||||||  |||||||||||||||  |||||||    
T  30737042 tcggacatcccacttattcaccttaaaaaatgtgaattctagtcactaggctacttgaaaaaaaaat 30737108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 219 - 285
Target Start/End: Original strand, 34107344 - 34107410
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaaat 285  Q
    ||||||||||||||| ||||||||| |||||| ||||||| ||||||||| |||||| ||| |||||    
T  34107344 ccacttattcaccttgaaaaatgtgaattctagccactagactacttgacaaaaaaaaaaaaaaaat 34107410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 17896888 - 17896944
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    ||||||||||||||||||||||||| |||||||||||||  |||||| || ||||||    
T  17896888 ccacttattcaccttaaaaaatgtgaattctaaccactaaactacttaacaaaaaaa 17896944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 223 - 272
Target Start/End: Complemental strand, 33124386 - 33124337
Alignment:
Q  223 ttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaa 272  Q
    ||||||||||||||||| ||| |||||||||||||  |||||||||||||    
T  33124386 ttattcaccttaaaaaaggtgaattctaaccactatactacttgaccaaa 33124337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 275
Target Start/End: Complemental strand, 44487809 - 44487736
Alignment:
Q  202 ttcgaatctcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    |||||| | ||| ||| ||||||||||||||||||||| ||| |||||||||||||  |||| |||| ||||||    
T  44487809 ttcgaaccccggacatcccacttattcaccttaaaaaaggtgaattctaaccactaacctacctgacaaaaaaa 44487736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 275
Target Start/End: Complemental strand, 25463287 - 25463235
Alignment:
Q  223 ttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    ||||||||||| |||||  || |||||||||||||||||||||||| ||||||    
T  25463287 ttattcaccttgaaaaaaatgaattctaaccactaggctacttgacaaaaaaa 25463235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 35352429 - 35352373
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    ||||||||||||||| ||||||||| ||||||  |||||| ||||||||| ||||||    
T  35352429 ccacttattcaccttgaaaaatgtgaattctagtcactagactacttgacaaaaaaa 35352373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 277
Target Start/End: Complemental strand, 26975320 - 26975266
Alignment:
Q  223 ttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaata 277  Q
    |||||||| |||||||| ||  ||||||||||||| |||||||||| ||||||||    
T  26975320 ttattcactttaaaaaaggttaattctaaccactacgctacttgacaaaaaaata 26975266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 284
Target Start/End: Complemental strand, 39334906 - 39334841
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaaa 284  Q
    |||||||||||| || ||||| ||| |||||| ||||||| ||||||||| |||||| ||| ||||    
T  39334906 ccacttattcactttgaaaaaggtgaattctagccactagactacttgacaaaaaaaaaaaaaaaa 39334841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 275
Target Start/End: Original strand, 5613056 - 5613084
Alignment:
Q  247 tctaaccactaggctacttgaccaaaaaa 275  Q
    |||||||||||||||||||||||||||||    
T  5613056 tctaaccactaggctacttgaccaaaaaa 5613084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 276
Target Start/End: Original strand, 6282306 - 6282362
Alignment:
Q  220 cacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaat 276  Q
    ||||||||||| || ||||||||| |||||||||||||   |||||||| |||||||    
T  6282306 cacttattcactttgaaaaatgtgaattctaaccactaaattacttgacaaaaaaat 6282362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 274
Target Start/End: Complemental strand, 10915550 - 10915522
Alignment:
Q  246 ttctaaccactaggctacttgaccaaaaa 274  Q
    |||||||||||||||||||||||||||||    
T  10915550 ttctaaccactaggctacttgaccaaaaa 10915522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 275
Target Start/End: Original strand, 23664043 - 23664095
Alignment:
Q  223 ttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    ||||||||||| ||||| ||| ||||||| |||||| ||||||||| ||||||    
T  23664043 ttattcaccttgaaaaaagtgaattctaatcactagactacttgacaaaaaaa 23664095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 273
Target Start/End: Complemental strand, 34018112 - 34018043
Alignment:
Q  202 ttcgaatctcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaa 273  Q
    |||||| ||||| ||  |||||||||||||||| ||   ||| ||||||||||||||||||| |||||||||    
T  34018112 ttcgaacctcggacaccccacttattcaccttataag--gtgaattctaaccactaggctacctgaccaaaa 34018043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 255
Target Start/End: Complemental strand, 34644510 - 34644474
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccac 255  Q
    |||||||||||||||||||| |||| |||||||||||    
T  34644510 ccacttattcaccttaaaaattgtgaattctaaccac 34644474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 275
Target Start/End: Original strand, 36182744 - 36182772
Alignment:
Q  247 tctaaccactaggctacttgaccaaaaaa 275  Q
    |||||||||||||||||||||||||||||    
T  36182744 tctaaccactaggctacttgaccaaaaaa 36182772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 218 - 284
Target Start/End: Original strand, 30203322 - 30203389
Alignment:
Q  218 tccacttattcacctt-aaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaaa 284  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||| | ||||||||    
T  30203322 tccacttattcatcttgaaaaaatgtgtattctaaccactaggctacttgacaaaaataaaaataaaa 30203389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 275
Target Start/End: Original strand, 21664147 - 21664204
Alignment:
Q  218 tccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    |||||||||||| ||| | ||| ||| |||||||||||||||||||||||||||||||    
T  21664147 tccacttattcatcttgagaaaggtgaattctaaccactaggctacttgaccaaaaaa 21664204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 275
Target Start/End: Original strand, 21672911 - 21672968
Alignment:
Q  218 tccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    |||||||||||| ||| | ||| ||| |||||||||||||||||||||||||||||||    
T  21672911 tccacttattcatcttgagaaaggtgaattctaaccactaggctacttgaccaaaaaa 21672968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 30195466 - 30195414
Alignment:
Q  3 atttgtctctaggctctttatgtagtttatagcctcatctacttgatcaggta 55  Q
    ||||| |||||  ||||||||||||||||||||||||||||||||||| ||||    
T  30195466 atttgcctctaaactctttatgtagtttatagcctcatctacttgatccggta 30195414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 49039470 - 49039414
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    ||||||||||||||| ||||| ||| |||||| |||||||||||||| |||||||||    
T  49039470 ccacttattcaccttgaaaaaggtgaattctagccactaggctacttaaccaaaaaa 49039414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 274
Target Start/End: Original strand, 20610809 - 20610864
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaa 274  Q
    ||||||||||||||||||||| ||| |||||| ||||||| |||| ||||||||||    
T  20610809 ccacttattcaccttaaaaaaggtgaattctagccactagactacctgaccaaaaa 20610864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 33359887 - 33359943
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    ||||||||||||||| ||||| ||| |||||| |||||||||||||| || ||||||    
T  33359887 ccacttattcaccttgaaaaaggtgaattctagccactaggctacttaacaaaaaaa 33359943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 284
Target Start/End: Complemental strand, 54854203 - 54854139
Alignment:
Q  220 cacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaaa 284  Q
    |||||||||||||| ||||| ||| |||||| ||||||| ||||||||| |||||| ||| ||||    
T  54854203 cacttattcaccttgaaaaaagtgaattctagccactagactacttgacaaaaaaaaaaaaaaaa 54854139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 262
Target Start/End: Complemental strand, 18740941 - 18740898
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggcta 262  Q
    ||||||||||||||| ||||||||  ||||||||||||||||||    
T  18740941 ccacttattcaccttgaaaaatgttcattctaaccactaggcta 18740898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 259
Target Start/End: Original strand, 27921967 - 27922006
Alignment:
Q  220 cacttattcaccttaaaaaatgtgtattctaaccactagg 259  Q
    |||||||||| ||||||||||||| |||||||||||||||    
T  27921967 cacttattcatcttaaaaaatgtgaattctaaccactagg 27922006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 255
Target Start/End: Original strand, 39449470 - 39449505
Alignment:
Q  220 cacttattcaccttaaaaaatgtgtattctaaccac 255  Q
    |||||||||||||||||||||||| |||||||||||    
T  39449470 cacttattcaccttaaaaaatgtgaattctaaccac 39449505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 274
Target Start/End: Complemental strand, 8998400 - 8998347
Alignment:
Q  221 acttattcaccttaa-aaaatgtgtattctaaccactaggctacttgaccaaaaa 274  Q
    ||||||||||||||| |||||||| ||||||| ||||||||||||| ||||||||    
T  8998400 acttattcaccttaaaaaaatgtgaattctaa-cactaggctacttcaccaaaaa 8998347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 273
Target Start/End: Complemental strand, 41492524 - 41492470
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaa 273  Q
    ||||||||| ||||| ||||| ||| |||||| |||||||| |||||||||||||    
T  41492524 ccacttatttaccttgaaaaaggtgaattctagccactaggttacttgaccaaaa 41492470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 21476106 - 21476052
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    ||||||||||| |||| |||  ||| |||||| ||||||||||||||||||||||||    
T  21476106 ccacttattcatcttataaa--gtgaattctagccactaggctacttgaccaaaaaa 21476052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 273
Target Start/End: Complemental strand, 23226729 - 23226676
Alignment:
Q  220 cacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaa 273  Q
    |||||||||||||||||||||||| ||| || ||||||  ||||||||| ||||    
T  23226729 cacttattcaccttaaaaaatgtgaattatagccactatactacttgacaaaaa 23226676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 33524265 - 33524220
Alignment:
Q  223 ttattcaccttaaaaaatgtgtattctaaccactaggctacttgac 268  Q
    ||||||||| ||||||||||| ||| |||||||||| |||||||||    
T  33524265 ttattcaccataaaaaatgtgaattttaaccactagactacttgac 33524220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 36257764 - 36257818
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    |||||||||||| |||||||  ||| |||||| ||||||||||||| ||||||||||    
T  36257764 ccacttattcactttaaaaa--gtgaattctagccactaggctactagaccaaaaaa 36257818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 263
Target Start/End: Original strand, 47416521 - 47416582
Alignment:
Q  202 ttcgaatctcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggctac 263  Q
    |||||||||||| ||  |||||||||||| || ||||| ||| ||||||||||||| |||||    
T  47416521 ttcgaatctcggacaccccacttattcactttgaaaaaggtgaattctaaccactaagctac 47416582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 275
Target Start/End: Original strand, 8965196 - 8965224
Alignment:
Q  247 tctaaccactaggctacttgaccaaaaaa 275  Q
    |||||||||||||||||||||||||||||    
T  8965196 tctaaccactaggctacttgaccaaaaaa 8965224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 259
Target Start/End: Complemental strand, 21023377 - 21023337
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactagg 259  Q
    ||||||||||||||| ||||| ||| |||||||||||||||    
T  21023377 ccacttattcaccttgaaaaaggtgaattctaaccactagg 21023337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 275
Target Start/End: Original strand, 30057324 - 30057352
Alignment:
Q  247 tctaaccactaggctacttgaccaaaaaa 275  Q
    |||||||||||||||||||||||||||||    
T  30057324 tctaaccactaggctacttgaccaaaaaa 30057352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 275
Target Start/End: Original strand, 36132331 - 36132359
Alignment:
Q  247 tctaaccactaggctacttgaccaaaaaa 275  Q
    |||||||||||||||||||||||||||||    
T  36132331 tctaaccactaggctacttgaccaaaaaa 36132359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 49280693 - 49280640
Alignment:
Q  220 cacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    ||||||||||||||| ||   ||| |||||||||||||||||||||||| ||||||    
T  49280693 cacttattcaccttataag--gtgaattctaaccactaggctacttgacaaaaaaa 49280640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 198 - 268
Target Start/End: Original strand, 41000809 - 41000879
Alignment:
Q  198 gagattcgaatctcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgac 268  Q
    |||||||||||| ||  ||| ||||||||||||||||||||||||| ||||||||||| || |||||||||    
T  41000809 gagattcgaatcccgaacatcccacttattcaccttaaaaaatgtgaattctaaccaccagactacttgac 41000879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 247 - 283
Target Start/End: Original strand, 3766913 - 3766949
Alignment:
Q  247 tctaaccactaggctacttgaccaaaaaataaataaa 283  Q
    |||||||||||||||||||||||||||||||||||||    
T  3766913 tctaaccactaggctacttgaccaaaaaataaataaa 3766949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 10958103 - 10958159
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    |||||||||||||| |||||| ||| |||||| ||||||||||||| ||||||||||    
T  10958103 ccacttattcacctcaaaaaaggtgaattctagccactaggctactagaccaaaaaa 10958159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 44409270 - 44409326
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    ||||||||||||||| ||||| ||| ||||||||||||||| |||||||| ||||||    
T  44409270 ccacttattcaccttgaaaaaggtgaattctaaccactaggttacttgacaaaaaaa 44409326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 284
Target Start/End: Original strand, 1649222 - 1649287
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaaa 284  Q
    ||||||||||||||| ||||  ||| |||||| ||||||||||| |||||||||||| ||| ||||    
T  1649222 ccacttattcaccttgaaaatggtgaattctagccactaggctatttgaccaaaaaaaaaaaaaaa 1649287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 267
Target Start/End: Complemental strand, 32309190 - 32309125
Alignment:
Q  202 ttcgaatctcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggctacttga 267  Q
    |||||||||| | ||  ||| ||||||||||||||||||||| |||||| ||||||| ||||||||    
T  32309190 ttcgaatctcagacaccccagttattcaccttaaaaaatgtgaattctagccactagactacttga 32309125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 283
Target Start/End: Original strand, 32814880 - 32814961
Alignment:
Q  202 ttcgaatctcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaa 283  Q
    |||||||| ||| ||  |||||||||||  | |||||| ||| ||| |||||||| | ||||||||||||||||||||||||    
T  32814880 ttcgaatcccggacaccccacttattcatataaaaaaaggtgaattttaaccactggactacttgaccaaaaaataaataaa 32814961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 283
Target Start/End: Original strand, 48053235 - 48053284
Alignment:
Q  234 aaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaa 283  Q
    |||||||||| ||||||||||||| || ||||||| ||||||||||||||    
T  48053235 aaaaaatgtgaattctaaccactaagcaacttgacaaaaaaataaataaa 48053284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 5773201 - 5773257
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    ||||||||||||||| ||||| ||| |||||| ||||||||| ||||||| ||||||    
T  5773201 ccacttattcaccttgaaaaaggtggattctacccactaggcgacttgacaaaaaaa 5773257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 284
Target Start/End: Complemental strand, 29658297 - 29658234
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaaa 284  Q
    |||||||||||||||| ||   ||| |||||| |||||||||||||||||||||||| ||| ||||    
T  29658297 ccacttattcaccttataag--gtgaattctagccactaggctacttgaccaaaaaaaaaaaaaaa 29658234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 284
Target Start/End: Complemental strand, 36316016 - 36315934
Alignment:
Q  202 ttcgaatctcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaaa 284  Q
    |||||| ||||| ||  |||||||||||||||| | || ||| |||||||| |||| ||||||||||| ||||| ||| ||||    
T  36316016 ttcgaacctcggacaccccacttattcaccttatataaagtgaattctaacaactaagctacttgacctaaaaaaaaaaaaaa 36315934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 273
Target Start/End: Complemental strand, 3481193 - 3481140
Alignment:
Q  220 cacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaa 273  Q
    |||||||||||||||||||  ||| |||||||||||||  |||||||| |||||    
T  3481193 cacttattcaccttaaaaatggtgaattctaaccactaaactacttgatcaaaa 3481140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 11808108 - 11808165
Alignment:
Q  219 ccacttattcacctta-aaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    |||||||||||||||| ||||| ||| |||||||| ||||| ||||||||| ||||||    
T  11808108 ccacttattcaccttagaaaaacgtgaattctaacaactagactacttgacaaaaaaa 11808165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 275
Target Start/End: Complemental strand, 25711173 - 25711101
Alignment:
Q  202 ttcgaatctcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    |||||| ||||| ||  |||||||||||| ||| ||| |||| |||||| ||||||||||| ||||||||||||    
T  25711173 ttcgaacctcggacaccccacttattcactttataaa-tgtgaattctatccactaggctatttgaccaaaaaa 25711101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 284
Target Start/End: Complemental strand, 26734296 - 26734232
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaaa 284  Q
    ||||||||||||||| ||||| ||| |||||| |||||||||||  ||| ||||||| ||||||||    
T  26734296 ccacttattcaccttgaaaaaggtgaattctagccactaggctatctga-caaaaaaaaaataaaa 26734232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 275
Target Start/End: Complemental strand, 28555877 - 28555820
Alignment:
Q  218 tccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    |||||||||||||||||||||| ||  |||||||| | ||||||| ||||| ||||||    
T  28555877 tccacttattcaccttaaaaaaggtaaattctaactattaggctatttgacaaaaaaa 28555820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 275
Target Start/End: Complemental strand, 42976626 - 42976569
Alignment:
Q  218 tccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    ||||||||||||| |||||||| ||| |||||| | ||||| ||||||||| ||||||    
T  42976626 tccacttattcactttaaaaaaggtgaattctacctactagactacttgacaaaaaaa 42976569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 268
Target Start/End: Complemental strand, 7162696 - 7162644
Alignment:
Q  216 attccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgac 268  Q
    |||||||||||||| ||| ||||| ||| |||||||| ||||||||| |||||    
T  7162696 attccacttattcatcttgaaaaaggtgaattctaactactaggctatttgac 7162644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 10020494 - 10020438
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    ||||||||||| ||| ||||| ||| |||||| ||||||| ||||||||| ||||||    
T  10020494 ccacttattcatcttgaaaaaggtgaattctacccactagcctacttgacaaaaaaa 10020438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 277
Target Start/End: Complemental strand, 17900880 - 17900848
Alignment:
Q  245 attctaaccactaggctacttgaccaaaaaata 277  Q
    |||||| ||||||||||||||||||||||||||    
T  17900880 attctagccactaggctacttgaccaaaaaata 17900848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 202 - 275
Target Start/End: Complemental strand, 220404 - 220331
Alignment:
Q  202 ttcgaatctcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    |||||||| ||| ||  ||||||||||||||| ||||| ||| |||||||||||||| ||||||||||||||||    
T  220404 ttcgaatcccggacaccccacttattcaccttgaaaaaggtgaattctaaccactagactacttgaccaaaaaa 220331  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 202 - 275
Target Start/End: Complemental strand, 689559 - 689486
Alignment:
Q  202 ttcgaatctcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    |||||||| ||| ||  ||||||||||||||| ||||| ||| |||||||||||||| ||||||||||||||||    
T  689559 ttcgaatcccggacaccccacttattcaccttgaaaaaggtgaattctaaccactagactacttgaccaaaaaa 689486  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 202 - 275
Target Start/End: Complemental strand, 734027 - 733954
Alignment:
Q  202 ttcgaatctcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    |||||||| ||| ||  ||||||||||||||| ||||| ||| |||||||||||||| ||||||||||||||||    
T  734027 ttcgaatcccggacaccccacttattcaccttgaaaaaggtgaattctaaccactagactacttgaccaaaaaa 733954  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 202 - 275
Target Start/End: Complemental strand, 857923 - 857850
Alignment:
Q  202 ttcgaatctcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    |||||||| ||| ||  ||||||||||||||| ||||| ||| |||||||||||||| ||||||||||||||||    
T  857923 ttcgaatcccggacaccccacttattcaccttgaaaaaggtgaattctaaccactagactacttgaccaaaaaa 857850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 14011080 - 14011020
Alignment:
Q  202 ttcgaatctcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggcta 262  Q
    |||||| ||||| ||| ||||||||||| ||||||||||||| ||||||||||||||||||    
T  14011080 ttcgaacctcggacatcccacttattcatcttaaaaaatgtgaattctaaccactaggcta 14011020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 279
Target Start/End: Complemental strand, 16808385 - 16808325
Alignment:
Q  219 ccacttattcaccttaaaaaat-gtgtattctaaccactaggctacttgaccaaaaaataaa 279  Q
    |||||||||||||||||||||  ||| ||||||||||||||||| ||||| |||||||||||    
T  16808385 ccacttattcaccttaaaaaaaagtgaattctaaccactaggctgcttga-caaaaaataaa 16808325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 247 - 284
Target Start/End: Complemental strand, 43085191 - 43085154
Alignment:
Q  247 tctaaccactaggctacttgaccaaaaaataaataaaa 284  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  43085191 tctaaccactaggctacttgaccaaaaaataaaaaaaa 43085154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 281
Target Start/End: Original strand, 29653123 - 29653187
Alignment:
Q  218 tccacttattcaccttaaaaaatg-tgtattctaaccactaggctacttgaccaaaaaataaata 281  Q
    |||||||||||||||||||||| | || |||||| ||||||  || |||||||||||||||||||    
T  29653123 tccacttattcaccttaaaaaaaggtgaattctagccactaaactgcttgaccaaaaaataaata 29653187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 39208893 - 39208838
Alignment:
Q  220 cacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    |||||||||||||| ||||| ||| |||||| ||||||| ||||||||| ||||||    
T  39208893 cacttattcacctttaaaaaggtgaattctagccactagactacttgacaaaaaaa 39208838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 280
Target Start/End: Complemental strand, 22438610 - 22438548
Alignment:
Q  218 tccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaat 280  Q
    |||||||||||||||||||||| ||| ||||||| ||||||  ||||| ||| ||||| ||||    
T  22438610 tccacttattcaccttaaaaaaggtgaattctaatcactagattactttacccaaaaaaaaat 22438548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 284
Target Start/End: Original strand, 11875988 - 11876025
Alignment:
Q  247 tctaaccactaggctacttgaccaaaaaataaataaaa 284  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  11875988 tctaaccactaggctacttgaccaaaaaaaaaaaaaaa 11876025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 284
Target Start/End: Original strand, 11890995 - 11891032
Alignment:
Q  247 tctaaccactaggctacttgaccaaaaaataaataaaa 284  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  11890995 tctaaccactaggctacttgaccaaaaaaaaaaaaaaa 11891032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 26773731 - 26773694
Alignment:
Q  215 cattccacttattcaccttaaaaaatgtgtattctaac 252  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  26773731 cattccacttattcatcttaaaaaatgtgaattctaac 26773694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 4604379 - 4604339
Alignment:
Q  218 tccacttattcaccttaaaaaatgtgtattctaaccactag 258  Q
    ||||||||||||||||||||||  || ||||||||||||||    
T  4604379 tccacttattcaccttaaaaaagatgaattctaaccactag 4604339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 18123931 - 18123987
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    |||||||||| |||||||||| ||| |||||| || ||||  |||||||||||||||    
T  18123931 ccacttattctccttaaaaaaggtgaattctagccgctagattacttgaccaaaaaa 18123987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 283
Target Start/End: Original strand, 29514728 - 29514764
Alignment:
Q  247 tctaaccactaggctacttgaccaaaaaataaataaa 283  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  29514728 tctagccactaggctacttgacaaaaaaataaataaa 29514764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 275
Target Start/End: Original strand, 34413164 - 34413192
Alignment:
Q  247 tctaaccactaggctacttgaccaaaaaa 275  Q
    |||||||||||||||||||||||||||||    
T  34413164 tctaaccactaggctacttgaccaaaaaa 34413192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 275
Target Start/End: Original strand, 35818161 - 35818189
Alignment:
Q  247 tctaaccactaggctacttgaccaaaaaa 275  Q
    |||||||||||||||||||||||||||||    
T  35818161 tctaaccactaggctacttgaccaaaaaa 35818189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 219 - 284
Target Start/End: Complemental strand, 3535961 - 3535896
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaaa 284  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||| |||| |||||| ||| ||||    
T  3535961 ccacttattcaccttaaaaaaagtgaattctaaccactaggctacctgacaaaaaaaaaaaaaaaa 3535896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 263
Target Start/End: Complemental strand, 17137893 - 17137848
Alignment:
Q  218 tccacttattcaccttaaaaaatgtgtattctaaccactaggctac 263  Q
    |||||||||||||||| ||||| ||| |||||||||||||||||||    
T  17137893 tccacttattcaccttgaaaaacgtgaattctaaccactaggctac 17137848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 273
Target Start/End: Original strand, 18535985 - 18536038
Alignment:
Q  220 cacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaa 273  Q
    |||||||||||||| ||||| ||| |||||||||||||  ||||||||||||||    
T  18535985 cacttattcaccttgaaaaaagtgaattctaaccactaaactacttgaccaaaa 18536038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 275
Target Start/End: Original strand, 34325318 - 34325391
Alignment:
Q  202 ttcgaatctcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    |||||||||||  ||| | |||||||||||||||||||  || |||||| |||||| |||||||||| ||||||    
T  34325318 ttcgaatctcgaacatccaacttattcaccttaaaaaaaatgaattctagccactaagctacttgacaaaaaaa 34325391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 8934851 - 8934907
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    ||||||||||||||| ||||| ||  |||||||||| ||| ||||||||||||||||    
T  8934851 ccacttattcacctttaaaaaggtaaattctaaccattagactacttgaccaaaaaa 8934907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 267
Target Start/End: Complemental strand, 37986892 - 37986844
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttga 267  Q
    ||||||||||||||| ||||| ||| |||||| ||||||||||||||||    
T  37986892 ccacttattcaccttgaaaaaggtgaattctagccactaggctacttga 37986844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 274
Target Start/End: Complemental strand, 36116904 - 36116850
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaa 274  Q
    ||||||||||| ||| ||||||||| |||||| | |||||||||||||||||||||    
T  36116904 ccacttattcatcttcaaaaatgtgaattctagc-actaggctacttgaccaaaaa 36116850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 258
Target Start/End: Original strand, 39684308 - 39684347
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactag 258  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  39684308 ccacttattcaccttaaaaaaggtgaattctaaccactag 39684347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 20186934 - 20186983
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgac 268  Q
    ||||||||||||||| ||||| ||| ||| |||||||||| |||||||||    
T  20186934 ccacttattcaccttgaaaaaagtgaattataaccactagactacttgac 20186983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 275
Target Start/End: Original strand, 27006409 - 27006466
Alignment:
Q  218 tccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    |||||||||||||||| ||||| ||| |||||| ||  ||||||||||||| ||||||    
T  27006409 tccacttattcaccttgaaaaaggtgaattctagccgttaggctacttgacaaaaaaa 27006466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 279
Target Start/End: Original strand, 13862194 - 13862254
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaa 279  Q
    ||||||||||  ||| ||||| | | ||||||||||||||||||| |||| ||||||||||    
T  13862194 ccacttattcttcttgaaaaaggagaattctaaccactaggctacctgacaaaaaaataaa 13862254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 279
Target Start/End: Complemental strand, 22569213 - 22569181
Alignment:
Q  247 tctaaccactaggctacttgaccaaaaaataaa 279  Q
    |||| ||||||||||||||||||||||||||||    
T  22569213 tctagccactaggctacttgaccaaaaaataaa 22569181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 263
Target Start/End: Complemental strand, 22687906 - 22687862
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctac 263  Q
    ||||||||||||||| ||||| ||| |||||||||||||| ||||    
T  22687906 ccacttattcaccttgaaaaaggtgaattctaaccactagactac 22687862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 28537205 - 28537261
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    |||||||||||| || ||||  ||| |||||| ||||||||||||||||| ||||||    
T  28537205 ccacttattcactttgaaaatggtgaattctagccactaggctacttgacaaaaaaa 28537261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 440469 - 440525
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||| |||| ||||||    
T  440469 ccacttattcaccttaaaaaaggtgaattctaaccactaggctacctgacaaaaaaa 440525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 38028607 - 38028663
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    ||||||||||||||| ||||||||| |||||||| ||||||||||||||| ||||||    
T  38028607 ccacttattcaccttgaaaaatgtgaattctaactactaggctacttgacaaaaaaa 38028663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 280
Target Start/End: Original strand, 195114 - 195175
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaat 280  Q
    ||||||||||||||| ||||| ||| ||||||||||||| |||||||||| |||||| ||||    
T  195114 ccacttattcaccttgaaaaaggtgaattctaaccactaagctacttgacaaaaaaaaaaat 195175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 280
Target Start/End: Complemental strand, 2643840 - 2643779
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaat 280  Q
    ||||||||||||||||||||||||| | |||||||||||| |||| |||| |||||| ||||    
T  2643840 ccacttattcaccttaaaaaatgtgaactctaaccactagactacctgacaaaaaaaaaaat 2643779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 3269712 - 3269753
Alignment:
Q  246 ttctaaccactaggctacttgaccaaaaaataaataaaataa 287  Q
    ||||| |||||||||||||||||||||||| |||||||||||    
T  3269712 ttctagccactaggctacttgaccaaaaaaaaaataaaataa 3269753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 284
Target Start/End: Complemental strand, 9768834 - 9768769
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaaa 284  Q
    ||||||||||||||| ||||| ||| |||||| | |||||||||| ||||||||||| ||| ||||    
T  9768834 ccacttattcaccttgaaaaaggtgaattctagctactaggctacctgaccaaaaaaaaaaaaaaa 9768769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 284
Target Start/End: Original strand, 9931157 - 9931222
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaaa 284  Q
    |||||||||||||||||| || ||| |||||||| ||||| ||||||||| |||||| ||| ||||    
T  9931157 ccacttattcaccttaaagaaggtgaattctaactactagactacttgacaaaaaaaaaaaaaaaa 9931222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 3341761 - 3341705
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    ||||||||||||||| ||||| ||| |||||| |||||||||| | |||||||||||    
T  3341761 ccacttattcaccttgaaaaaggtgaattctagccactaggctgcctgaccaaaaaa 3341705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 9769605 - 9769549
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    ||||||||||||||| ||||| ||| ||||||||||||| ||||| |||| ||||||    
T  9769605 ccacttattcaccttgaaaaaggtgaattctaaccactaagctacctgacaaaaaaa 9769549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 12553264 - 12553320
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    |||||||||||| || ||||| ||| |||||| |||||||||||| |||||||||||    
T  12553264 ccacttattcactttgaaaaaggtgaattctagccactaggctacctgaccaaaaaa 12553320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 19866545 - 19866601
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    ||||||||||||||||||||| ||| |||||| ||||||  ||||||||| ||||||    
T  19866545 ccacttattcaccttaaaaaaggtgaattctagccactaaactacttgacaaaaaaa 19866601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 275
Target Start/End: Complemental strand, 23758273 - 23758221
Alignment:
Q  223 ttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    ||||||| |||||||| |||| |||||||||||||| ||||||||| ||||||    
T  23758273 ttattcatcttaaaaattgtgaattctaaccactagactacttgacaaaaaaa 23758221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 283
Target Start/End: Original strand, 33033228 - 33033264
Alignment:
Q  247 tctaaccactaggctacttgaccaaaaaataaataaa 283  Q
    |||||||||||| ||||||||||||||||||||||||    
T  33033228 tctaaccactagactacttgaccaaaaaataaataaa 33033264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 48260214 - 48260158
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    ||||||||||||||| ||||||||| |||||| ||| |||||| |||||| ||||||    
T  48260214 ccacttattcaccttgaaaaatgtgaattctagccattaggctccttgacaaaaaaa 48260158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 275
Target Start/End: Original strand, 50147598 - 50147650
Alignment:
Q  223 ttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    ||||||||||||||||| ||| |||||||||||||  ||||||||| ||||||    
T  50147598 ttattcaccttaaaaaaagtgaattctaaccactaaactacttgacaaaaaaa 50147650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 1721211 - 1721266
Alignment:
Q  220 cacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    |||||||||||||||||||| ||| |||||| ||  ||||||||||||| ||||||    
T  1721211 cacttattcaccttaaaaaaggtgaattctagccgttaggctacttgacaaaaaaa 1721266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 274
Target Start/End: Complemental strand, 2903052 - 2902997
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaa 274  Q
    ||||||||||||||| ||||| | | |||||| |||||||| ||||||||||||||    
T  2903052 ccacttattcaccttgaaaaaggagaattctagccactaggttacttgaccaaaaa 2902997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 254
Target Start/End: Original strand, 3261924 - 3261963
Alignment:
Q  215 cattccacttattcaccttaaaaaatgtgtattctaacca 254  Q
    ||||||||||||||||||| ||||||||| ||||||||||    
T  3261924 cattccacttattcaccttgaaaaatgtgaattctaacca 3261963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 275
Target Start/End: Complemental strand, 4069636 - 4069581
Alignment:
Q  218 tccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    |||||||||||||||||| |   ||| |||||| ||||||||||||||||||||||||    
T  4069636 tccacttattcaccttaagag--gtgaattctacccactaggctacttgaccaaaaaa 4069581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 257
Target Start/End: Complemental strand, 4511550 - 4511512
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccacta 257  Q
    ||||||||||||||||||||| ||| |||||||||||||    
T  4511550 ccacttattcaccttaaaaaaggtgaattctaaccacta 4511512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 275
Target Start/End: Complemental strand, 7906348 - 7906294
Alignment:
Q  222 cttattcaccttaaaaaatgtgtattctaaccactaggctacttg-accaaaaaa 275  Q
    |||||| ||||||||||||||| |||||| |||||||| |||||| |||||||||    
T  7906348 cttattgaccttaaaaaatgtgaattctagccactagggtacttgaaccaaaaaa 7906294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 282
Target Start/End: Original strand, 9163354 - 9163415
Alignment:
Q  220 cacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataa 282  Q
    |||||||||| |||||||| |||| |||||| ||||||| |||| ||||||||||||| ||||    
T  9163354 cacttattcatcttaaaaa-tgtgaattctagccactagactacctgaccaaaaaatatataa 9163415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 276
Target Start/End: Original strand, 13941389 - 13941446
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaat 276  Q
    ||||||||||| ||| ||||| ||| |||||||||||||  ||||||||| |||||||    
T  13941389 ccacttattcatcttgaaaaaagtgaattctaaccactaaactacttgacaaaaaaat 13941446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 23973507 - 23973458
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgac 268  Q
    |||||||||||| || ||||||||| |||||| ||||||| |||||||||    
T  23973507 ccacttattcacgttgaaaaatgtgaattctagccactagactacttgac 23973458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 263
Target Start/End: Original strand, 23750220 - 23750264
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctac 263  Q
    ||||||||||| ||| ||||| ||| |||||||||||||||||||    
T  23750220 ccacttattcatcttgaaaaaggtgaattctaaccactaggctac 23750264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 263
Target Start/End: Original strand, 41677130 - 41677174
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctac 263  Q
    ||||||||||||||| ||||| ||| |||||| ||||||||||||    
T  41677130 ccacttattcaccttgaaaaaggtgaattctagccactaggctac 41677174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 287
Target Start/End: Complemental strand, 48497210 - 48497170
Alignment:
Q  247 tctaaccactaggctacttgaccaaaaaataaataaaataa 287  Q
    |||| |||||||||||||||||||||||  |||||||||||    
T  48497210 tctagccactaggctacttgaccaaaaataaaataaaataa 48497170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 280
Target Start/End: Original strand, 28951936 - 28951997
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaat 280  Q
    ||||||||||||||| ||||||||| |||||||||| || | ||||||||||||||| ||||    
T  28951936 ccacttattcaccttgaaaaatgtgaattctaaccattaagttacttgaccaaaaaaaaaat 28951997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 274
Target Start/End: Original strand, 33533273 - 33533328
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaa 274  Q
    ||||||||||||||||||||| ||| |||||||| ||||| ||||||||| |||||    
T  33533273 ccacttattcaccttaaaaaaagtgaattctaacaactagactacttgacaaaaaa 33533328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 275
Target Start/End: Original strand, 43911675 - 43911732
Alignment:
Q  218 tccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    |||||||||||||||| ||||||||| ||| |  ||||||||||||||||| ||||||    
T  43911675 tccacttattcaccttgaaaaatgtgaattattgccactaggctacttgacaaaaaaa 43911732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 247 - 284
Target Start/End: Complemental strand, 44764538 - 44764501
Alignment:
Q  247 tctaaccactaggctacttgaccaaaaaataaataaaa 284  Q
    |||| |||||||||||||||||||||||||||||||||    
T  44764538 tctagccactaggctacttgaccaaaaaataaataaaa 44764501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 275
Target Start/End: Complemental strand, 4010039 - 4009987
Alignment:
Q  223 ttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    ||||||||||| ||||   || |||||||||||||||||||||||||||||||    
T  4010039 ttattcaccttgaaaatgttgaattctaaccactaggctacttgaccaaaaaa 4009987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 284
Target Start/End: Complemental strand, 6054249 - 6054185
Alignment:
Q  220 cacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaaa 284  Q
    |||||||||||||| ||||| ||| |||||||||||||| ||| ||||| |||||| ||| ||||    
T  6054249 cacttattcaccttgaaaaaggtgaattctaaccactagactatttgacaaaaaaaaaaaaaaaa 6054185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 40160805 - 40160853
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttga 267  Q
    ||||||||||||||| ||||| ||| |||||| ||||||||||||||||    
T  40160805 ccacttattcacctttaaaaaggtgaattctagccactaggctacttga 40160853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 279
Target Start/End: Original strand, 46798680 - 46798712
Alignment:
Q  247 tctaaccactaggctacttgaccaaaaaataaa 279  Q
    |||||||||||||||||||||||||||||||||    
T  46798680 tctaaccactaggctacttgaccaaaaaataaa 46798712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 285
Target Start/End: Original strand, 50724420 - 50724501
Alignment:
Q  202 ttcgaatctcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaaat 285  Q
    |||||| ||||| ||  ||||||||||||||||||||  ||| |||||| |||||||||||| |||| |||||| || ||||||    
T  50724420 ttcgaacctcggacaccccacttattcaccttaaaaa--gtgaattctagccactaggctacctgacaaaaaaaaaagtaaaat 50724501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 275
Target Start/End: Complemental strand, 3993706 - 3993676
Alignment:
Q  245 attctaaccactaggctacttgaccaaaaaa 275  Q
    |||||||||||||||||||||||||||||||    
T  3993706 attctaaccactaggctacttgaccaaaaaa 3993676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 275
Target Start/End: Complemental strand, 50788428 - 50788357
Alignment:
Q  202 ttcgaatctcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    |||||| ||||| ||  ||||||||||||||||||||  ||| |||||| |||||||||||| |||| ||||||    
T  50788428 ttcgaacctcggacaccccacttattcaccttaaaaa--gtgaattctagccactaggctacctgacaaaaaaa 50788357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 8724841 - 8724889
Alignment:
Q  218 tccacttattcaccttaaaaaatgtgtattctaaccactaggctacttga 267  Q
    ||||||||||||||||||||||||  | ||||||||||||| ||||||||    
T  8724841 tccacttattcaccttaaaaaatgaat-ttctaaccactagactacttga 8724889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 9076728 - 9076776
Alignment:
Q  218 tccacttattcaccttaaaaaatgtgtattctaaccactaggctacttga 267  Q
    ||||||||||||||||||||||||  | ||||||||||||| ||||||||    
T  9076728 tccacttattcaccttaaaaaatgaat-ttctaaccactagactacttga 9076776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 283
Target Start/End: Complemental strand, 28206562 - 28206500
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaa 283  Q
    |||||||||||||||| ||   ||| ||||||||||||||||||| ||| ||| |||||||||||    
T  28206562 ccacttattcaccttataag--gtgaattctaaccactaggctacctgatcaataaataaataaa 28206500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 275
Target Start/End: Complemental strand, 16141350 - 16141322
Alignment:
Q  247 tctaaccactaggctacttgaccaaaaaa 275  Q
    |||||||||||||||||||||||||||||    
T  16141350 tctaaccactaggctacttgaccaaaaaa 16141322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 275
Target Start/End: Original strand, 32429849 - 32429877
Alignment:
Q  247 tctaaccactaggctacttgaccaaaaaa 275  Q
    |||||||||||||||||||||||||||||    
T  32429849 tctaaccactaggctacttgaccaaaaaa 32429877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 279
Target Start/End: Original strand, 36842232 - 36842292
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaa 279  Q
    |||||||||||| || ||||| ||| |||||||||||||  ||| ||||| ||||||||||    
T  36842232 ccacttattcactttgaaaaaagtgaattctaaccactaatctatttgacaaaaaaataaa 36842292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 275
Target Start/End: Complemental strand, 40956708 - 40956656
Alignment:
Q  223 ttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    ||||||| ||||||||| ||| |||||||||||||  ||||||||| ||||||    
T  40956708 ttattcagcttaaaaaaggtgaattctaaccactaaactacttgacaaaaaaa 40956656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 47497148 - 47497196
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttga 267  Q
    ||||||||||||||||||||| ||| ||| |||||||||  ||||||||    
T  47497148 ccacttattcaccttaaaaaaggtgaattttaaccactaaactacttga 47497196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 283
Target Start/End: Complemental strand, 15963912 - 15963875
Alignment:
Q  246 ttctaaccactaggctacttgaccaaaaaataaataaa 283  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  15963912 ttctagccactaggctacttgaccaaaaaataaataaa 15963875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 4844214 - 4844262
Alignment:
Q  220 cacttattcaccttaaaaaatgtgtattctaaccactaggctacttgac 268  Q
    |||||||||||||| ||||| ||| |||||||||||||| |||||||||    
T  4844214 cacttattcaccttgaaaaaagtgaattctaaccactagactacttgac 4844262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 17305587 - 17305642
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    ||||||||||||||| ||||| ||| ||||||| ||||| |||||||||||||||||    
T  17305587 ccacttattcaccttgaaaaa-gtgaattctaatcactaagctacttgaccaaaaaa 17305642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 3243887 - 3243942
Alignment:
Q  220 cacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    |||||||||||||||||||| ||| |||||||||||||  |||| |||| ||||||    
T  3243887 cacttattcaccttaaaaaaggtgaattctaaccactaaactacctgacaaaaaaa 3243942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 273
Target Start/End: Complemental strand, 3037614 - 3037560
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaa 273  Q
    ||||||||||| ||||||||| ||| ||||||||||||| |||||| ||| ||||    
T  3037614 ccacttattcatcttaaaaaaggtgaattctaaccactaagctactcgactaaaa 3037560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 280
Target Start/End: Original strand, 25045841 - 25045875
Alignment:
Q  246 ttctaaccactaggctacttgaccaaaaaataaat 280  Q
    |||||||||||||||||||||||||||||| ||||    
T  25045841 ttctaaccactaggctacttgaccaaaaaaaaaat 25045875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 978105 - 978064
Alignment:
Q  246 ttctaaccactaggctacttgaccaaaaaataaataaaataa 287  Q
    |||||||||||| ||||||||||||||||| ||| |||||||    
T  978105 ttctaaccactaagctacttgaccaaaaaaaaaaaaaaataa 978064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 284
Target Start/End: Original strand, 13732913 - 13732950
Alignment:
Q  247 tctaaccactaggctacttgaccaaaaaataaataaaa 284  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  13732913 tctaaccactaggctacttgaccaaaaaaaaaaaaaaa 13732950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 275
Target Start/End: Original strand, 16119352 - 16119405
Alignment:
Q  223 ttattcacctt-aaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    ||||||||||| |||||||||| |||||| ||||||| ||||||||| ||||||    
T  16119352 ttattcaccttaaaaaaatgtgaattctagccactagactacttgacaaaaaaa 16119405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 284
Target Start/End: Complemental strand, 26669684 - 26669619
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaaa 284  Q
    ||||||||||||||| ||||| ||| |||||| ||||||  ||||||||| |||||| ||| ||||    
T  26669684 ccacttattcaccttgaaaaaggtgaattctagccactaaactacttgacaaaaaaaaaaaaaaaa 26669619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 275
Target Start/End: Complemental strand, 9888493 - 9888465
Alignment:
Q  247 tctaaccactaggctacttgaccaaaaaa 275  Q
    |||||||||||||||||||||||||||||    
T  9888493 tctaaccactaggctacttgaccaaaaaa 9888465  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 275
Target Start/End: Original strand, 12291244 - 12291296
Alignment:
Q  223 ttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    ||||||| ||| |||||  |||||||||||||||||||||||| || ||||||    
T  12291244 ttattcagcttgaaaaagatgtattctaaccactaggctacttaacaaaaaaa 12291296  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 275
Target Start/End: Complemental strand, 14949040 - 14948988
Alignment:
Q  223 ttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    ||||||||||| ||||| ||| ||| || ||||||||||| ||||||||||||    
T  14949040 ttattcaccttgaaaaaggtgaattatagccactaggctatttgaccaaaaaa 14948988  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 275
Target Start/End: Complemental strand, 16913869 - 16913841
Alignment:
Q  247 tctaaccactaggctacttgaccaaaaaa 275  Q
    |||||||||||||||||||||||||||||    
T  16913869 tctaaccactaggctacttgaccaaaaaa 16913841  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 17347324 - 17347380
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    ||||||||||||||||||||| ||  |||||||||| ||| |||| |||| ||||||    
T  17347324 ccacttattcaccttaaaaaaggtaaattctaaccattagactacctgacaaaaaaa 17347380  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 20150004 - 20149948
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    ||||||||||||||| ||||| ||| |||||| | ||||| ||||||||| ||||||    
T  20150004 ccacttattcaccttgaaaaaggtgaattctatctactagcctacttgacaaaaaaa 20149948  T

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Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 22182828 - 22182884
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    ||||||||||||||| ||||| ||| |||||| | ||||| ||||||||| ||||||    
T  22182828 ccacttattcaccttgaaaaaggtgaattctatctactagcctacttgacaaaaaaa 22182884  T

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Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 275
Target Start/End: Original strand, 28222964 - 28222992
Alignment:
Q  247 tctaaccactaggctacttgaccaaaaaa 275  Q
    |||||||||||||||||||||||||||||    
T  28222964 tctaaccactaggctacttgaccaaaaaa 28222992  T

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Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 255
Target Start/End: Complemental strand, 29204894 - 29204858
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccac 255  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  29204894 ccacttattcaccttaaaaaaagtgaattctaaccac 29204858  T

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Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 30668209 - 30668153
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 275  Q
    ||||||||||||||||||||||||| ||| ||  |||||| ||||||| | ||||||    
T  30668209 ccacttattcaccttaaaaaatgtgaattatagtcactagactacttgtcaaaaaaa 30668153  T

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Target: scaffold0366 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 283
Target Start/End: Complemental strand, 828 - 792
Alignment:
Q  247 tctaaccactaggctacttgaccaaaaaataaataaa 283  Q
    |||| ||||||||||||||||||||||||||||||||    
T  828 tctagccactaggctacttgaccaaaaaataaataaa 792  T

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Target: scaffold0118 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 270
Target Start/End: Complemental strand, 37353 - 37302
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgacca 270  Q
    ||||||||||||||||||||||||| | | || ||||||||||| |||||||    
T  37353 ccacttattcaccttaaaaaatgtgaaatttagccactaggctatttgacca 37302  T

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Target: scaffold0119 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 284
Target Start/End: Original strand, 1109 - 1174
Alignment:
Q  219 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaaa 284  Q
    ||||||||||||||| ||||| ||| |||||| ||||||  ||||||||| |||||| ||| ||||    
T  1109 ccacttattcaccttgaaaaaggtgaattctagccactaaactacttgacaaaaaaaaaaaaaaaa 1174  T

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Target: scaffold0038 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 275
Target Start/End: Original strand, 23462 - 23490
Alignment:
Q  247 tctaaccactaggctacttgaccaaaaaa 275  Q
    |||||||||||||||||||||||||||||    
T  23462 tctaaccactaggctacttgaccaaaaaa 23490  T

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