View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18880_low_6 (Length: 271)
Name: NF18880_low_6
Description: NF18880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18880_low_6 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 38582130 - 38581878
Alignment:
| Q |
19 |
atgaagaagtgaatcaccagtcaaagaagaatttgaagaaataacctcaacgttctcttcatgcagtattctcataatttcacagaaaataaaatgttca |
118 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38582130 |
atgaagaagtgaatcaccagttaaagaagaatttgaagaaataacctcaacgttctcttcatgcagtattctcataatttcacagaaaataaaatgttca |
38582031 |
T |
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| Q |
119 |
tcaaccccacatgttacaatcacttgtagagtgggtcccatttcatgaatttctattttcggaaactttattatgcttccttttgctccataatcaccac |
218 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||| |
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| T |
38582030 |
tcaaccccacatgttacaatcacttgtagagtggatcccatttcatgaatttctatttttggcaactttattatgcttccttttgctccataaccaccac |
38581931 |
T |
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| Q |
219 |
gtggtctcttcttgtttcccattaaactttctttcttctcctttgcacccttt |
271 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38581930 |
gtgatctcttcttgtttcccattaaactttctttcttctcctttgcacccttt |
38581878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 264
Target Start/End: Original strand, 38617368 - 38617613
Alignment:
| Q |
19 |
atgaagaagtgaatcaccagtcaaagaagaatttgaagaaataacctcaacgttctcttcatgcagtattctcataatttcacagaaaataaaatgttca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
38617368 |
atgaagaagtgaatcaccagtcaaagaagaatttgaagaaataacctcaacgttctcttcatgcagtattctcataatttcacagaaaataaaatgttta |
38617467 |
T |
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| Q |
119 |
tcaaccccacatgttacaatcacttgtagagtgggtcccatttcatgaatttctattttcggaaactttattatgcttccttttgctccataatcaccac |
218 |
Q |
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| T |
38617468 |
tcaaccccacatgttacaatcacttgtagagtgggtcccatttcatgaatttctatttttggcaactttattatgcttccttttgctccataaccaccac |
38617567 |
T |
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| Q |
219 |
gtggtctcttcttgtttcccattaaactttctttcttctcctttgc |
264 |
Q |
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||| |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38617568 |
gtgatctcttcttgtttcccattaaactttcttttttctcctttgc |
38617613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 19 - 264
Target Start/End: Complemental strand, 38563931 - 38563677
Alignment:
| Q |
19 |
atgaagaagtgaatcaccagtcaaagaagaatttgaagaaataacctcaacgttctcttcatgcagtattctcataatttcacagaaaataaaatgttca |
118 |
Q |
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|||||||||||||||||| | |||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38563931 |
atgaagaagtgaatcaccggccaaagaagaatttgaagagataacatcgacgttctcttcatgcagtattctcataatttcacagaaaataaaatgttca |
38563832 |
T |
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| Q |
119 |
tcaaccccacatgttacaatcacttgtagagtgggtcccatttcatgaatttctattttcggaaactttattatgcttccttttgctccataa------- |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || |||| |||||||||||| ||||||||| |
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| T |
38563831 |
tcaaccccacatgttacaatcacttgtagagtgggtcctatttcatgaatctctatttttggcaact---ctatgcttcctttcgctccataagaactcg |
38563735 |
T |
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| Q |
212 |
-----tcaccacgtggtctcttcttgtttcccattaaactttctttcttctcctttgc |
264 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38563734 |
accagccaccacgtgatctcttcttgtttcccattaaactttctttcttctcctttgc |
38563677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 38606736 - 38606566
Alignment:
| Q |
19 |
atgaagaagtgaatcaccagtcaaagaagaatttgaagaaataacctcaacgttctcttcatgcagtattctcataatttcacagaaaataaaatgttca |
118 |
Q |
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|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38606736 |
atgaagaagtgaatggccagtcaaagaagtatttgaagaaataacctcaacgttctcttcatgcagtattctcataatttcacagaaaataaaatgttca |
38606637 |
T |
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| Q |
119 |
tcaaccccacatgttacaatcacttgtagagtgggtcccatttcatgaatttctattttcggaaactttat |
189 |
Q |
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|||||||||||||||||||| | |||||||||||||||||||||||| || |||||||| || |||||||| |
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| T |
38606636 |
tcaaccccacatgttacaattatttgtagagtgggtcccatttcatggatctctatttttggcaactttat |
38606566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 264
Target Start/End: Complemental strand, 38606534 - 38606485
Alignment:
| Q |
212 |
tcaccacgtggtctcttcttgtttcccattaaactttctttcttctcctttgc |
264 |
Q |
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|||||||||| |||||| ||||||||||||||||||||| ||||||||||| |
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| T |
38606534 |
tcaccacgtgatctctt---gtttcccattaaactttcttttttctcctttgc |
38606485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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