View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18882_high_1 (Length: 414)
Name: NF18882_high_1
Description: NF18882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18882_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 13 - 399
Target Start/End: Original strand, 2489158 - 2489544
Alignment:
| Q |
13 |
aatatctaccaggtactgatataatctgtgtgtcctttgtctctgtatgtatcatcccgaataaagaaaaaagaggaaggagctgctgtgaaaccagaag |
112 |
Q |
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| T |
2489158 |
aatatctaccaggtactgatataatctgtgtgtcctttgtctctgtatgtatcatcccgaataaagaaaaaagaggaaggagctgctgtgaaaccagaag |
2489257 |
T |
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| Q |
113 |
gaaagactgaaagtcctgctcctgctgtaaagactgaagcagaaataccaacttcagtgcgcaaaactgatggtgaaaattcagttcctgcatccaaagc |
212 |
Q |
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| T |
2489258 |
gaaagactgaaagtcctgcacctgctgtaaagactgaagcagaaataccaacttcagtgcgcaaaactgatggtgaaaattcagttcctgcatccaaagc |
2489357 |
T |
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| Q |
213 |
tgtaagccttctctgttttctaattattagatatattacaatttaattttaatagtgttgaaatcataccgcaagtggcttattcaaacacaacacaatc |
312 |
Q |
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| T |
2489358 |
tgtaagccttctctgttttctaattgttagatatattacaatttaattttaatagtgttgaaatcataccgcaagtggcttattcaaacacaacacaatc |
2489457 |
T |
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| Q |
313 |
tcttcacttgcaggaagttcctgataatgagtttgagaagcgaataagacctgaagtaatcccagcaaatgaaattggggtaacatt |
399 |
Q |
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| T |
2489458 |
tcttcacttgcaggaagttcctgataatgagtttgagaagcgaataagacctgaagtaatcccagcaaatgaaattggggtaacatt |
2489544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 315 - 389
Target Start/End: Complemental strand, 41591529 - 41591452
Alignment:
| Q |
315 |
ttcacttgcaggaagttcct---gataatgagtttgagaagcgaataagacctgaagtaatcccagcaaatgaaattg |
389 |
Q |
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| T |
41591529 |
ttcacttgcaggaagttcctcctgataatgaatttgagaagcgaataaggcctgaagttataccagcaaatgagattg |
41591452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 319 - 384
Target Start/End: Complemental strand, 11094921 - 11094856
Alignment:
| Q |
319 |
cttgcaggaagttcctgataatgagtttgagaagcgaataagacctgaagtaatcccagcaaatga |
384 |
Q |
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| T |
11094921 |
cttgcaggaagttcccgacaacgaattcgagaagcgaattagacctgaagttatccctgcaaatga |
11094856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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