View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18882_high_2 (Length: 414)
Name: NF18882_high_2
Description: NF18882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18882_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 8582204 - 8582002
Alignment:
| Q |
1 |
tgataccttttatgataagattgaagtgtccatgtttcttgaaggagttgaatactggctcgtaaatggaaagcaaaaataattgtcatctgttttttac |
100 |
Q |
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| T |
8582204 |
tgataccttttatgataagattgaagtgtccatgtttcttgaaggagttgaatactggctcgtaaatggaaagcaaaaataattgtcatctgttttttac |
8582105 |
T |
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| Q |
101 |
tacttctgggaaatgattcatttccccgcttttgtgcttgaaataagattttattgctttacatccgtaagacctactttctaacgtttgctgaactgat |
200 |
Q |
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| T |
8582104 |
ta---ctgggaaatgattcatttccccgcttttgtgcttgaaataagattttatggctttacatccttaagacctactttctaacatttgctgaagtgat |
8582008 |
T |
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| Q |
201 |
aacatg |
206 |
Q |
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|||||| |
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| T |
8582007 |
aacatg |
8582002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 255 - 397
Target Start/End: Complemental strand, 8581953 - 8581811
Alignment:
| Q |
255 |
aacaggacatcaaccatgtttattatgagaccgagtaccggatagaatggtgtcacaccaattcaaccttcgttccatgttttttgtttgctaggaagtt |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
8581953 |
aacaggacatcaaccatgtttattatgagaccgagtaccggatagaatggtgtcacaccaattcaaccttcgttccgtgttttttgtttgctaggaagtt |
8581854 |
T |
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| Q |
355 |
ctctcgaggagcagctatgcgcttgttaggggacggagttatt |
397 |
Q |
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| T |
8581853 |
ctctcgaggagcagctatgcgcttgttaggggacggagttatt |
8581811 |
T |
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