View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18882_low_5 (Length: 203)
Name: NF18882_low_5
Description: NF18882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18882_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 7e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 17 - 186
Target Start/End: Original strand, 33097218 - 33097387
Alignment:
| Q |
17 |
atcatgggaagttaaaagctgataaacatcacgaactgcatcacaaacaagttgtcactgccactgatctgacaaatgagtctgcaaagaaatatcatat |
116 |
Q |
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| T |
33097218 |
atcaggggaagttaaaagctgataaacatcacgatctacatcacaaacaagttgtcactgccactgatctgacaaatgagtctgcaaagaaatatcatat |
33097317 |
T |
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| Q |
117 |
gaagtaatgtcttacactccactgataactcctcttttcacgcccacaaccatctctgccacttccatac |
186 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33097318 |
gaagtaatgtcttacactccactaataactcctcttttcacgcccacaaccatctctgccacttccatac |
33097387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 33097168 - 33097210
Alignment:
| Q |
17 |
atcatgggaagttaaaagctgataaacatcacgaactgcatca |
59 |
Q |
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| T |
33097168 |
atcatgggaagttaaaagctgataaatatcacgaactgcatca |
33097210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 72 - 150
Target Start/End: Complemental strand, 6520248 - 6520172
Alignment:
| Q |
72 |
cactgccactgatctgacaaatgagtctgcaaagaaatatcatatgaagtaatgtcttacactccactgataactcctc |
150 |
Q |
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| T |
6520248 |
cactgtcattgatctgataaatgagtttggaaagaaatatcat--gaagtaatgtcctacactccactaataactcctc |
6520172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 183
Target Start/End: Original strand, 27324955 - 27325064
Alignment:
| Q |
72 |
cactgccactgatctgacaaatgagtctgcaaagaaatatcatatgaagtaatgtcttacactccactgataactcctcttttcacgcccacaaccatct |
171 |
Q |
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||||||||||||| || ||||||| ||||||||||| ||| | ||||||||||| |||||||| || | ||| | || | || |||||||| ||||| |
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| T |
27324955 |
cactgccactgatttgttaaatgagactgcaaagaaacatc--aagaagtaatgtcctacactccgctaacaacacttcctcccaagcccacaaacatct |
27325052 |
T |
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| Q |
172 |
ctgccacttcca |
183 |
Q |
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| T |
27325053 |
ccgccacttcca |
27325064 |
T |
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