View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18883_low_2 (Length: 239)
Name: NF18883_low_2
Description: NF18883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18883_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 24 - 226
Target Start/End: Complemental strand, 17517451 - 17517250
Alignment:
| Q |
24 |
agaacacatgaatgatgaatgtgattataataagtagaacatagtgcaaaatataaaggaaccacaatgttctcaccttattttgttcaagagtacactc |
123 |
Q |
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| T |
17517451 |
agaacacatgaatgatgaatgtgattataataagtaaaacataatgcaaaatataaaggaaccacaatgttctcaccttattttgttcaagagtgcactc |
17517352 |
T |
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| Q |
124 |
tttgaaaacaagacactcacactcctatcctatcctatataatgtatgaaaatatattacaacttgtgcttaaatctattggattcatataaaccatatt |
223 |
Q |
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||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
17517351 |
tttgaaaacaagacactcacactcctatcctat-atatagaatgtatgaaaatgtattgcaacttgtgcttaaatctattggattcatataaaccatttt |
17517253 |
T |
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| Q |
224 |
ctt |
226 |
Q |
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||| |
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| T |
17517252 |
ctt |
17517250 |
T |
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