View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18884_high_4 (Length: 442)
Name: NF18884_high_4
Description: NF18884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18884_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 18 - 429
Target Start/End: Complemental strand, 29059880 - 29059469
Alignment:
| Q |
18 |
aagttaactatatatattaagtgttttcataagctatcttaaaatactcattaacataatctgaaaacaacatatgaacatgtcatgaactatctcaaac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29059880 |
aagttaactatatatattaagtgttttcataagctatcttgaaatactcattaacataatctgaaaacaacatatgaacatgtcatgaactatctcaaac |
29059781 |
T |
|
| Q |
118 |
actatgcaagtatttatgtctcaccactaaaaataagtgctatgtcatagaataaattcaaataatctgcaaggaaattttctgctcttttggttccttt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
29059780 |
actatgcaagtatttatgtctcaccactaaaaataagtgctatgtcatagaacaaattcaaataatctgtaaggaaattttcttctcttttggttccttt |
29059681 |
T |
|
| Q |
218 |
ctacaatgattgttttgcaattgtttcatttatgcatgaccaataaacctacctagacgtttgaactctggcttctattatgctcattctgataatcaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29059680 |
ctacaatgattgttttgcaattgtttcatttatgcaggaccaataaacctacctagacgtttgaactctggcttctattatgctcattctgataatcaaa |
29059581 |
T |
|
| Q |
318 |
caattgcggccatagataaagtggtgaagcatgcagaagctgcatgcttatctgaacaaccaagcttctatgacatattatgtggaaaaggaggatccaa |
417 |
Q |
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||||||| |||||||||||||||||||| ||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29059580 |
caattgcagccatagataaagtggtgaaacatgcagaaacttcaggcttatctgaacaaccaagcttctatgacatattatgtggaaaaggaggatccaa |
29059481 |
T |
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| Q |
418 |
ccgtgtcagtga |
429 |
Q |
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|||||||||||| |
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| T |
29059480 |
ccgtgtcagtga |
29059469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 103
Target Start/End: Complemental strand, 32614977 - 32614947
Alignment:
| Q |
73 |
ataatctgaaaacaacatatgaacatgtcat |
103 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
32614977 |
ataatctgaaaacaacatatgaacatgtcat |
32614947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 33883813 - 33883749
Alignment:
| Q |
39 |
tgttttcataagctatcttaaaatactcattaacataatctgaaaacaacatatgaacatgtcat |
103 |
Q |
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||||| |||||||||||||| | ||| || || |||| ||||||||||| |||||||||||||| |
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| T |
33883813 |
tgtttacataagctatcttagagaacttatgaaaataagctgaaaacaacttatgaacatgtcat |
33883749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 34290243 - 34290307
Alignment:
| Q |
39 |
tgttttcataagctatcttaaaatactcattaacataatctgaaaacaacatatgaacatgtcat |
103 |
Q |
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||||||||||||||||||| || ||| || || |||| ||||||||||| |||||| ||||||| |
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|
| T |
34290243 |
tgttttcataagctatcttgaagaacttatgaaaataagctgaaaacaacttatgaatatgtcat |
34290307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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