View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18884_high_5 (Length: 417)
Name: NF18884_high_5
Description: NF18884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18884_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 20 - 407
Target Start/End: Original strand, 28520027 - 28520414
Alignment:
| Q |
20 |
ggtaagttattgtagtaacgcacatgtaatccacactgagttgaaacccatcctgtccaaaatgctaaacaaataattccaatcaacacgatcatatggt |
119 |
Q |
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| T |
28520027 |
ggtaacttactgtagtaacacacatgtaatccacactgagttgaaacccatcctttccaaaattctaaaaaaataattccattcaacacgatcatatgat |
28520126 |
T |
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| Q |
120 |
ttgctaatatctatttttaatgttgcttcccctttcttacctcgagtcctgcacttcaaataatgtatgatttctaaggcgacaaagacattatctgtaa |
219 |
Q |
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| T |
28520127 |
ttgctaatatctatttttaatgttgcttcccctttcttacctcgagtcttgcacttcaaataatatatgatttctaaggcgacaaacacattttctgtaa |
28520226 |
T |
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| Q |
220 |
tggatcttcctacaacaaagcctggttgtttaattgcttcagaaaactcgacatcattaaaaggagcgataagcatttggttatcctccatgttcagaaa |
319 |
Q |
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||||||||||| |||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
28520227 |
tggatcttcctgcaacaaagcctgattttttaaccgcttcagaaaactcgacatcattaaaaggagcgataagcatttggttatcctccatgttcagaca |
28520326 |
T |
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| Q |
320 |
agtttggacatcttgtaaaaccggttcttgctcacaattatggcagcaaaaatattggaaaaataggcgagttcacataacccttcat |
407 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28520327 |
cgtttggacatcttgtaaaatcggttcttgctcacaattatggcagcaaaaatattggaaaaataggcgagttcacataacccctcat |
28520414 |
T |
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