View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18884_high_6 (Length: 389)
Name: NF18884_high_6
Description: NF18884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18884_high_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 6 - 358
Target Start/End: Complemental strand, 8286646 - 8286293
Alignment:
| Q |
6 |
ctaccatgggatcagtgaatagtttgtggcagaagacatgttatggttaaaattttatgcaaatttgataaatagtttgatagcttagtgtatatttgag |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8286646 |
ctaccatgggatcagtgaatagtttgtggcagaagacatgttatggttaaaattttatgcaaatttgataaatagtttgatggcttagtgtatatttgag |
8286547 |
T |
|
| Q |
106 |
ttcggtgaaatcacggtaagtctctgaagcgcagtttttgctaaaattgcggtggcacaccgtgattttgttga-cccgttgccaatttaaacatgctta |
204 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
|
|
| T |
8286546 |
ttcggtgaaatcatggtaagtctctgaagcgcagtttttgctaaaattgcggtggcacaccgtgattttgttgaacccgttgccaatttaaacatgcata |
8286447 |
T |
|
| Q |
205 |
tgcacttaagctatttaagtaaattttctgaaacttttcttatatcaacaaaaactgttctttatttgtaacgtacaatgtttttgggtctgaatacttg |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8286446 |
tgcacttaagctatttaagtaaattttctgaaacttttcttatatcaacaaaaactgttctttatttgtaacgtacaatgtttttgggtctgaatacttg |
8286347 |
T |
|
| Q |
305 |
ctccactttacttacaccaatatttgatcttcagttacatgtctgaaacaatgg |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8286346 |
ctccactttacttacaccaatatttgatcttcagttacatgtctgaaacaatgg |
8286293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 146; Significance: 8e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 46625130 - 46624790
Alignment:
| Q |
1 |
gtgtgctaccatgggatcagtgaatagtttgtggcagaagacatgttatggttaaaattttatgcaaatttgataaatagtttgatagcttagtgtatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| || ||||| |||||||||||||||||||| | ||||||||| | |
|
|
| T |
46625130 |
gtgtgctaccatgggatcagtgaatagtttgtcgcaaaagacatgttatggttaaagttatatgcgaatttgataaatagtttgatgggttagtgtatgt |
46625031 |
T |
|
| Q |
101 |
ttgagttcggtgaaatcacggtaagtctctgaagcg--cagtttttgctaaaattgcggtggcacaccgtgattttgttga-cccgttgccaatttaaac |
197 |
Q |
| |
|
|||||||| | |||||||||||| ||||||||| | |||||||||||||||||| ||||||||||||||||||| ||| | | ||| |||| ||||| |
|
|
| T |
46625030 |
ttgagttctgcaaaatcacggtaaatctctgaagtgtacagtttttgctaaaattgttgtggcacaccgtgattttgctgagctcattggcaatctaaac |
46624931 |
T |
|
| Q |
198 |
atgcttatgcacttaagctatttaagt-aaattttctgaaacttttcttatatcaacaaaaactgtt-ctttatttgtaacgtacaatgtttttgggtct |
295 |
Q |
| |
|
||| ||||||||| ||||||||| | ||||||| ||||||| || |||||||||||||| || ||| ||||| |||||| ||||||||||||| |
|
|
| T |
46624930 |
atggatatgcacttggattatttaagtgagtttttctgtaactttttttctatcaacaaaaactattattttgtttgtgacgtactatgtttttgggtcc |
46624831 |
T |
|
| Q |
296 |
gaatacttgctccactttacttacaccaatatttgatcttc |
336 |
Q |
| |
|
|||||| |||| ||||| ||||||||||||||||||||||| |
|
|
| T |
46624830 |
gaatacatgctacacttcacttacaccaatatttgatcttc |
46624790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University