View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18884_low_1 (Length: 828)
Name: NF18884_low_1
Description: NF18884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18884_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 715; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 715; E-Value: 0
Query Start/End: Original strand, 6 - 816
Target Start/End: Complemental strand, 8286646 - 8285822
Alignment:
| Q |
6 |
ctaccatgggatcagtgaatagtttgtggcagaagacatgttatggttaaaattttatgcaaatttgataaatagtttgatagcttagtgtatatttgag |
105 |
Q |
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| T |
8286646 |
ctaccatgggatcagtgaatagtttgtggcagaagacatgttatggttaaaattttatgcaaatttgataaatagtttgatggcttagtgtatatttgag |
8286547 |
T |
|
| Q |
106 |
ttcggtgaaatcacggtaagtctctgaagcgcagtttttgctaaaattgcggtggcacaccgtgattttgttga-cccgttgccaatttaaacatgctta |
204 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
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| T |
8286546 |
ttcggtgaaatcatggtaagtctctgaagcgcagtttttgctaaaattgcggtggcacaccgtgattttgttgaacccgttgccaatttaaacatgcata |
8286447 |
T |
|
| Q |
205 |
tgcacttaagctatttaagtaaattttctgaaacttttcttatatcaacaaaaactgttctttatttgtaacgtacaatgtttttgggtctgaatacttg |
304 |
Q |
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| T |
8286446 |
tgcacttaagctatttaagtaaattttctgaaacttttcttatatcaacaaaaactgttctttatttgtaacgtacaatgtttttgggtctgaatacttg |
8286347 |
T |
|
| Q |
305 |
ctccactttacttacaccaatatttgatcttcagttacatgtctgaaacaatggnnnnnnnnncctgcataggttctgaaatgtcagtatgctgttcgag |
404 |
Q |
| |
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| T |
8286346 |
ctccactttacttacaccaatatttgatcttcagttacatgtctgaaacaatgg-ttttttttcctgcataggttctgaaatgtcagtatgctgttcgag |
8286248 |
T |
|
| Q |
405 |
gagagattgttacacttgctcaggtactgtaattttcctgtatatattaagtttgtgccattcattgaaaacagttttgttaaattgtggccttggcaga |
504 |
Q |
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| T |
8286247 |
gagagattgttacacttgctcaggtactgtaattttcctgtatatattaagtttgtgccattcattgaaaacagttttgttaaattgtggccttggcaga |
8286148 |
T |
|
| Q |
505 |
atggtgttgtggattttttgacaaccatattaggcaatctgtgaagggatgcctgccatagaccacaatggc--------------atgtttgacttccg |
590 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
8286147 |
atggtgttgcggattttttgacaaccatattaggcaatctgtgaagggatgcctgccatagaccgcaatggcatgtttgtatgcaaatgtttgacttccg |
8286048 |
T |
|
| Q |
591 |
tcatcaaaacactgattcaaaattttgttctgacttggcacatttcatagataatatagcgaaaaacacttgctacagtgctttgagtataatacagttt |
690 |
Q |
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| T |
8286047 |
tcatcaaaacactgattcaaaattttgttctgacttggcacatttcatagataatatagcgaaaaacacttgctacagtgctttgagtataatacagttt |
8285948 |
T |
|
| Q |
691 |
gaaaattgaaatattctttgctacttaaagtttgaaattgacgactgttataacttacaataccttaatgttgcagaacttgcaaaaagctttgcaagcc |
790 |
Q |
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| T |
8285947 |
gaaaattgaaatattctctgctacttaaagtttgaaattgacgactgttataacttacaataccttaatgttgcagaacttgcaaaaagctttgcaagcc |
8285848 |
T |
|
| Q |
791 |
aatccagatgctcattcgtttgatga |
816 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
8285847 |
aatccagatgctcattcgtttgatga |
8285822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 179; Significance: 4e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 1 - 446
Target Start/End: Complemental strand, 46625130 - 46624687
Alignment:
| Q |
1 |
gtgtgctaccatgggatcagtgaatagtttgtggcagaagacatgttatggttaaaattttatgcaaatttgataaatagtttgatagcttagtgtatat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| || ||||| |||||||||||||||||||| | ||||||||| | |
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| T |
46625130 |
gtgtgctaccatgggatcagtgaatagtttgtcgcaaaagacatgttatggttaaagttatatgcgaatttgataaatagtttgatgggttagtgtatgt |
46625031 |
T |
|
| Q |
101 |
ttgagttcggtgaaatcacggtaagtctctgaagcg--cagtttttgctaaaattgcggtggcacaccgtgattttgttga-cccgttgccaatttaaac |
197 |
Q |
| |
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|||||||| | |||||||||||| ||||||||| | |||||||||||||||||| ||||||||||||||||||| ||| | | ||| |||| ||||| |
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| T |
46625030 |
ttgagttctgcaaaatcacggtaaatctctgaagtgtacagtttttgctaaaattgttgtggcacaccgtgattttgctgagctcattggcaatctaaac |
46624931 |
T |
|
| Q |
198 |
atgcttatgcacttaagctatttaagt-aaattttctgaaacttttcttatatcaacaaaaactgtt-ctttatttgtaacgtacaatgtttttgggtct |
295 |
Q |
| |
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||| ||||||||| ||||||||| | ||||||| ||||||| || |||||||||||||| || ||| ||||| |||||| ||||||||||||| |
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| T |
46624930 |
atggatatgcacttggattatttaagtgagtttttctgtaactttttttctatcaacaaaaactattattttgtttgtgacgtactatgtttttgggtcc |
46624831 |
T |
|
| Q |
296 |
gaatacttgctccactttacttacaccaatatttgatcttcagttacatgtctgaaacaatggnnnnnnnnncctgcataggttctgaaatgtcagtatg |
395 |
Q |
| |
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|||||| |||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
46624830 |
gaatacatgctacacttcacttacaccaatatttgatcttc-------tgtctgaaacaatgttttttttttcctgcttaggttctgaaatgtcagtatg |
46624738 |
T |
|
| Q |
396 |
ctgttcgaggagagattgttacacttgctcaggtactgtaattttcctgta |
446 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||| | ||||||||| |
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|
| T |
46624737 |
ttgttcaaggagagattgttacacttgctcaggtactgtgactttcctgta |
46624687 |
T |
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