View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18884_low_10 (Length: 378)
Name: NF18884_low_10
Description: NF18884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18884_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 9 - 362
Target Start/End: Original strand, 33235763 - 33236115
Alignment:
| Q |
9 |
agcagagagtaacagtgagtggatatgttgaaccaaagaaagtgttgaaagctgctcaatctacaaagaagaaggttgagctttggccttatgttccata |
108 |
Q |
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| T |
33235763 |
agcagaaagtaacggtgagtggatatgttgaaccaaagaaagtgttgaaagctgctcaatctacaaagaagaaggttgagctttggccttatgttccata |
33235862 |
T |
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| Q |
109 |
cactatggtggctcatccttatatttcacaagcctatgataagaaagcacctcctaatatggttagaaaggttggtgacacttccaacataaaagagtcc |
208 |
Q |
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| T |
33235863 |
cactatggtggctcatccttatatttcacaagcctatgataagaaagcacctcctaatatggttagaaaggttggcgacacttccaacataaaagagtcc |
33235962 |
T |
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| Q |
209 |
acctttgatgatagctatgttgaaatgttcagtgatgaaaatccaaatgcttgttctattatgtaatcattcattaaaaaatatgtgtgtatgatgatta |
308 |
Q |
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| T |
33235963 |
acctttgatgatagctatgttgaaatgttcagtgatgaaaatccaaatgcttgttctattatgtaatcattcatt-aaaaatatgtgtgtatgatgatta |
33236061 |
T |
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| Q |
309 |
atttctcaccccttatggtaatcacactttgaggagaaaataatgtaataggtg |
362 |
Q |
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| T |
33236062 |
atttctcaccccttatggtaatcacactttgaggagaaaataatgtaataggtg |
33236115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 274
Target Start/End: Complemental strand, 40577034 - 40576991
Alignment:
| Q |
231 |
aaatgttcagtgatgaaaatccaaatgcttgttctattatgtaa |
274 |
Q |
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| T |
40577034 |
aaattttcagtgatgaaaatccaaatgcttgttctatcatgtaa |
40576991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 38127463 - 38127423
Alignment:
| Q |
233 |
atgttcagtgatgaaaatccaaatgcttgttctattatgta |
273 |
Q |
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| T |
38127463 |
atgttcagtgatgaaaacccaaatgcatgttctatcatgta |
38127423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 160
Target Start/End: Original strand, 10652856 - 10652926
Alignment:
| Q |
90 |
tttggccttatgttccatacactatggtggctcatccttatatttcacaagcctatgataagaaagcacct |
160 |
Q |
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| T |
10652856 |
tttggccatatattccatacaacttggtggcttatccttatatatctcaagcttatgacaagaaagcacct |
10652926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 273
Target Start/End: Original strand, 9699733 - 9699770
Alignment:
| Q |
236 |
ttcagtgatgaaaatccaaatgcttgttctattatgta |
273 |
Q |
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| T |
9699733 |
ttcagtgatgagaatccaaatgcttgttctgttatgta |
9699770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 272
Target Start/End: Complemental strand, 40787097 - 40787056
Alignment:
| Q |
231 |
aaatgttcagtgatgaaaatccaaatgcttgttctattatgt |
272 |
Q |
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| T |
40787097 |
aaatgtttagtgatgaaaatcctaatgcttgttctgttatgt |
40787056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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