View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18884_low_11 (Length: 354)
Name: NF18884_low_11
Description: NF18884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18884_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 9e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 40561765 - 40561934
Alignment:
| Q |
19 |
tgggggactccctcagctatatatacttttaaccagataaataccgaaaacatcatactttcatggaccactttccatatgcagttaagaacaataatac |
118 |
Q |
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| T |
40561765 |
tgggggactccctcagctatatatacttttaaccagataaataccgaaaacatcatactttcatggaccactttccatatgcagttaagaacaataatac |
40561864 |
T |
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| Q |
119 |
ttgtacagaaaaggtagcatggcattatttggggggcatactaaattactgtccccgtgcatgccgtata |
188 |
Q |
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| T |
40561865 |
ttgtacagaaaaggtagcattgcattatttggggggcatactaaattactgtccccgtgcatgccgtata |
40561934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 196 - 351
Target Start/End: Original strand, 40561962 - 40562116
Alignment:
| Q |
196 |
cagaagtgtttaagggagaatggatgaaagaattattaatagaggaaatcattttaattaaggtaatgctaacttgtgctttaggctgnnnnnnnctaaa |
295 |
Q |
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| T |
40561962 |
cagaagtgtttaagggagaatggatgaaagaattattaatagagaaaatcattttaattaaggtaatgctaacttgtgctttaggctg-ttttttctaaa |
40562060 |
T |
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| Q |
296 |
gaatggaagggagatgagagaaaataaatttagctagacaaatgttatagtagtat |
351 |
Q |
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| T |
40562061 |
gaatggaagggagatgagagaaaataaatttagctagacaaatgttatagtagtat |
40562116 |
T |
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