View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18884_low_15 (Length: 326)

Name: NF18884_low_15
Description: NF18884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18884_low_15
NF18884_low_15
[»] scaffold0341 (2 HSPs)
scaffold0341 (1-310)||(12174-12483)
scaffold0341 (1-310)||(4549-4862)
[»] chr1 (12 HSPs)
chr1 (1-310)||(6510494-6510803)
chr1 (1-310)||(6502870-6503183)
chr1 (183-310)||(6515066-6515193)
chr1 (183-310)||(6497722-6497849)
chr1 (183-310)||(6525311-6525438)
chr1 (1-146)||(6514893-6515039)
chr1 (4-71)||(47775329-47775396)
chr1 (243-309)||(47771004-47771070)
chr1 (4-81)||(6497514-6497591)
chr1 (1-76)||(6525528-6525603)
chr1 (1-60)||(47771242-47771301)
chr1 (240-307)||(47701359-47701426)
[»] chr5 (10 HSPs)
chr5 (1-74)||(28859790-28859863)
chr5 (183-307)||(28828947-28829071)
chr5 (1-74)||(28854403-28854476)
chr5 (243-310)||(27368659-27368726)
chr5 (183-310)||(28854608-28854735)
chr5 (180-310)||(28874533-28874663)
chr5 (1-74)||(28828702-28828775)
chr5 (1-71)||(27368344-27368414)
chr5 (243-310)||(28860026-28860093)
chr5 (30-74)||(28874400-28874444)
[»] chr3 (1 HSPs)
chr3 (242-307)||(3094891-3094956)


Alignment Details
Target: scaffold0341 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 12174 - 12483
Alignment:
Q  1 ccaaaactaaagacatcggattttactgaaaactgtccgtgcattacatactcaggtgccgtatatccactacaaaacaatatgggagttaagctaaatt 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12174 ccaaaactaaagacatcggattttactgaaaactgtccttgcattacatactcaggtgccatatatccactacaaaacaatatgggagttaagctaaatt 12273  T
Q  101 aagcaaaatattttcacttatcttcaactttctactaacttgcataaactaatttaaaaacaaccaatactannnnnnnaacacttactaagttcccaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       || ||||||||||||||||||    
T  12274 aagcaaaatattttcacttatcttcaactttctactaacttgcataaactaatttaaaaacaaccaatactatttttttaatacttactaagttcccaca 12373  T
Q  201 attctatttgtgttttcctgggtttggtcaacaccaaaaagccttgccatgccaaaatcagctatcttaggattcatctcttcatccaagagaatattgc 300  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12374 attctatttgtgttttcctgggtttggtcaatactaaaaagccttgccatgccaaaatcagctatcttaggattcatctcttcatccaagagaatattgc 12473  T
Q  301 ttgctttgag 310  Q
    ||||||||||    
T  12474 ttgctttgag 12483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 4549 - 4862
Alignment:
Q  1 ccaaaactaaagacatcggattttactgaaaactgtccgtgcattacatactcaggtgccgtatatccactacaaaacaatatgggagttaagctaaatt 100  Q
    |||||||| |||||||| |||||||| ||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||  ||  | |         |    
T  4549 ccaaaactgaagacatctgattttaccgaaaattgtccgtgcattacatactcaggtgccatatatccgctacaaaacaatgaggatggt---------t 4639  T
Q  101 aagcaaaatattttcacttatcttcaactttctactaacttgcataaactaat--------------ttaaaaacaaccaatactannnnnnnaacactt 186  Q
    ||||||||| |||||| ||||||||||||||||| | | || ||||||||||               | ||||||||||||||||        ||  |||    
T  4640 aagcaaaatgttttcaattatcttcaactttctatttatttacataaactaagcctcctgattaaaataaaaaacaaccaatacttttttttgaatgctt 4739  T
Q  187 actaagttcccacaattctatttgtgttttcctgggtttggtcaacaccaaaaagccttgccatgccaaaatcagctatcttaggattcatctcttcatc 286  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||    
T  4740 actaagttcccacaattctatttgtgttt-cctgggtttggtcaacaccaaaaagtcttgccatgccaaaatcagctatcttaggattcatatgttcatc 4838  T
Q  287 caagagaatattgcttgctttgag 310  Q
    |||||||||||| |||||||||||    
T  4839 caagagaatattacttgctttgag 4862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 6510494 - 6510803
Alignment:
Q  1 ccaaaactaaagacatcggattttactgaaaactgtccgtgcattacatactcaggtgccgtatatccactacaaaacaatatgggagttaagctaaatt 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6510494 ccaaaactaaagacatcggattttactgaaaactgtccttgcattacatactcaggtgccatatatccactacaaaacaatatgggagttaagctaaatt 6510593  T
Q  101 aagcaaaatattttcacttatcttcaactttctactaacttgcataaactaatttaaaaacaaccaatactannnnnnnaacacttactaagttcccaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       || ||||||||||||||||||    
T  6510594 aagcaaaatattttcacttatcttcaactttctactaacttgcataaactaatttaaaaacaaccaatactatttttttaatacttactaagttcccaca 6510693  T
Q  201 attctatttgtgttttcctgggtttggtcaacaccaaaaagccttgccatgccaaaatcagctatcttaggattcatctcttcatccaagagaatattgc 300  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6510694 attctatttgtgttttcctgggtttggtcaatactaaaaagccttgccatgccaaaatcagctatcttaggattcatctcttcatccaagagaatattgc 6510793  T
Q  301 ttgctttgag 310  Q
    ||||||||||    
T  6510794 ttgctttgag 6510803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 6502870 - 6503183
Alignment:
Q  1 ccaaaactaaagacatcggattttactgaaaactgtccgtgcattacatactcaggtgccgtatatccactacaaaacaatatgggagttaagctaaatt 100  Q
    |||||||| |||||||| |||||||| ||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||  ||  | |         |    
T  6502870 ccaaaactgaagacatctgattttaccgaaaattgtccgtgcattacatactcaggtgccatatatccgctacaaaacaatgaggatggt---------t 6502960  T
Q  101 aagcaaaatattttcacttatcttcaactttctactaacttgcataaact--------------aatttaaaaacaaccaatactannnnnnnaacactt 186  Q
    ||||||||| |||||| ||||||||||||||||| | | || ||||||||              || | ||||||||||||||||        ||  |||    
T  6502961 aagcaaaatgttttcaattatcttcaactttctatttatttacataaactaagcctcctgattaaaataaaaaacaaccaatact-ttttttgaatgctt 6503059  T
Q  187 actaagttcccacaattctatttgtgttttcctgggtttggtcaacaccaaaaagccttgccatgccaaaatcagctatcttaggattcatctcttcatc 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||    
T  6503060 actaagttcccacaattctatttgtgttttcctgggtttggtcaacaccaaaaagtcttgccatgccaaaatcagctatcttaggattcatatgttcatc 6503159  T
Q  287 caagagaatattgcttgctttgag 310  Q
    |||||||||||| |||||||||||    
T  6503160 caagagaatattacttgctttgag 6503183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 183 - 310
Target Start/End: Original strand, 6515066 - 6515193
Alignment:
Q  183 acttactaagttcccacaattctatttgtgttttcctgggtttggtcaacaccaaaaagccttgccatgccaaaatcagctatcttaggattcatctctt 282  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||  ||    
T  6515066 acttactaggttcccacaattctatttgtgttttcctgggtttggtccacaccaaaaagtcttgccatgccaaaatcagctatcttaggattcatccgtt 6515165  T
Q  283 catccaagagaatattgcttgctttgag 310  Q
     ||| |||||||||||||||||||||||    
T  6515166 tatctaagagaatattgcttgctttgag 6515193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 183 - 310
Target Start/End: Original strand, 6497722 - 6497849
Alignment:
Q  183 acttactaagttcccacaattctatttgtgttttcctgggtttggtcaacaccaaaaagccttgccatgccaaaatcagctatcttaggattcatctctt 282  Q
    |||||||| |||||||||||||| |||||||||||||| |||||||| |||||||| || ||||||||||||||||||| ||||||||||||||| ||||    
T  6497722 acttactaggttcccacaattctttttgtgttttcctgtgtttggtccacaccaaatagtcttgccatgccaaaatcagatatcttaggattcatttctt 6497821  T
Q  283 catccaagagaatattgcttgctttgag 310  Q
    |||| |||||||| || |||||||||||    
T  6497822 catctaagagaatgttacttgctttgag 6497849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 183 - 310
Target Start/End: Complemental strand, 6525438 - 6525311
Alignment:
Q  183 acttactaagttcccacaattctatttgtgttttcctgggtttggtcaacaccaaaaagccttgccatgccaaaatcagctatcttaggattcatctctt 282  Q
    |||||||| |||||||||||||| ||||| |||||||| |||||||| ||| |||| || || |||||||||||||| ||||||||||||||||||||||    
T  6525438 acttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctgctatcttaggattcatctctt 6525339  T
Q  283 catccaagagaatattgcttgctttgag 310  Q
    |||| |||||||||||||||||||||||    
T  6525338 catctaagagaatattgcttgctttgag 6525311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 6514893 - 6515039
Alignment:
Q  1 ccaaaactaaagacatcggattttactgaaaactgtccgtgcattacatactcaggtgccgtatatccactacaaaacaatatggg-agttaagctaaat 99  Q
    ||||||||||||||||| ||||||  |||||| ||||| ||| |  ||||||| |||||| |||| |||||||| ||||||||||  |||| ||||||||    
T  6514893 ccaaaactaaagacatctgattttgttgaaaattgtccatgcctcgcatactctggtgccatatacccactacataacaatatggatagttcagctaaat 6514992  T
Q  100 taagcaaaatattttcacttatcttcaactttctactaacttgcata 146  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||    
T  6514993 taagaaaaatatttttacttatcttcaactttctactaacttgcata 6515039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 47775396 - 47775329
Alignment:
Q  4 aaactaaagacatcggattttactgaaaactgtccgtgcattacatactcaggtgccgtatatccact 71  Q
    |||||||||||||| |||||||| ||||| ||||| |||||| |||||||||||||| ||||||||||    
T  47775396 aaactaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgccatatatccact 47775329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 243 - 309
Target Start/End: Complemental strand, 47771070 - 47771004
Alignment:
Q  243 cttgccatgccaaaatcagctatcttaggattcatctcttcatccaagagaatattgcttgctttga 309  Q
    |||||||  |||||||||| |||||||||||||||||| || || |||||||| |||||||||||||    
T  47771070 cttgccaatccaaaatcagatatcttaggattcatctcatcgtctaagagaatgttgcttgctttga 47771004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 6497514 - 6497591
Alignment:
Q  4 aaactaaagacatcggattttactgaaaactgtccgtgcattacatactcaggtgccgtatatccactacaaaacaat 81  Q
    ||||| || ||||| || || |||||||| |||||||||||  |||| ||||||||| ||||||||||||||||||||    
T  6497514 aaactgaatacatccgacttcactgaaaattgtccgtgcatagcatattcaggtgccatatatccactacaaaacaat 6497591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 6525603 - 6525528
Alignment:
Q  1 ccaaaactaaagacatcggattttactgaaaactgtccgtgcattacatactcaggtgccgtatatccactacaaa 76  Q
    ||||||||||| ||||| || || |||||||| ||||| |||||| ||||||| |||||| |||||||||| ||||    
T  6525603 ccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccactgcaaa 6525528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 47771301 - 47771242
Alignment:
Q  1 ccaaaactaaagacatcggattttactgaaaactgtccgtgcattacatactcaggtgcc 60  Q
    ||||| ||||||||||| |||||||| ||||| ||||| |||||| ||||||||||||||    
T  47771301 ccaaagctaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgcc 47771242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 307
Target Start/End: Original strand, 47701359 - 47701426
Alignment:
Q  240 agccttgccatgccaaaatcagctatcttaggattcatctcttcatccaagagaatattgcttgcttt 307  Q
    ||||| ||||| |||||||| | ||| ||||||||||| | ||||||||||||||| || ||||||||    
T  47701359 agcctggccataccaaaatctgatattttaggattcattttttcatccaagagaatgttacttgcttt 47701426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 28859790 - 28859863
Alignment:
Q  1 ccaaaactaaagacatcggattttactgaaaactgtccgtgcattacatactcaggtgccgtatatccactaca 74  Q
    ||||||||||||||||| ||||| |||||||| | ||| ||||||||||||||||||||| ||||||| |||||    
T  28859790 ccaaaactaaagacatctgatttcactgaaaattctccatgcattacatactcaggtgccatatatccgctaca 28859863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 307
Target Start/End: Original strand, 28828947 - 28829071
Alignment:
Q  183 acttactaagttcccacaattctatttgtgttttcctgggtttggtcaacaccaaaaagccttgccatgccaaaatcagctatcttaggattcatctctt 282  Q
    |||||||| ||||| ||||||||| |||| ||| | || ||||| || |||  ||  || ||||||||||||||||| |||||||||| |||||| |||     
T  28828947 acttactaggttccaacaattctacttgtatttgcttgtgtttgatccacaagaattagtcttgccatgccaaaatctgctatcttagcattcatgtctc 28829046  T
Q  283 catccaagagaatattgcttgcttt 307  Q
    |||| |||||||| |||||||||||    
T  28829047 catctaagagaatgttgcttgcttt 28829071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 28854403 - 28854476
Alignment:
Q  1 ccaaaactaaagacatcggattttactgaaaactgtccgtgcattacatactcaggtgccgtatatccactaca 74  Q
    |||||||| |||||||| |||||||||||||| | ||| ||||||||||||||||||||| |||| || |||||    
T  28854403 ccaaaactgaagacatctgattttactgaaaattctccatgcattacatactcaggtgccatatacccgctaca 28854476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 310
Target Start/End: Original strand, 27368659 - 27368726
Alignment:
Q  243 cttgccatgccaaaatcagctatcttaggattcatctcttcatccaagagaatattgcttgctttgag 310  Q
    |||||||  |||||||| | ||||||||||||||||||||| || || ||||||||||||||||||||    
T  27368659 cttgccaatccaaaatcggatatcttaggattcatctcttcgtctaaaagaatattgcttgctttgag 27368726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 310
Target Start/End: Original strand, 28854608 - 28854735
Alignment:
Q  183 acttactaagttcccacaattctatttgtgttttcctgggtttggtcaacaccaaaaagccttgccatgccaaaatcagctatcttaggattcatctctt 282  Q
    |||||||||||||| ||||  ||| |||| ||||| || ||||| || |||  ||  || ||||||||||| ||||| | |||||||| |||||| | ||    
T  28854608 acttactaagttccaacaacactacttgtattttcttgtgtttgatccacaagaattagtcttgccatgccgaaatctgatatcttagcattcatgtttt 28854707  T
Q  283 catccaagagaatattgcttgctttgag 310  Q
    |||| ||||||||||||| |||||||||    
T  28854708 catctaagagaatattgcctgctttgag 28854735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 180 - 310
Target Start/End: Original strand, 28874533 - 28874663
Alignment:
Q  180 aacacttactaagttcccacaattctatttgtgttttcctgggtttggtcaacaccaaaaagccttgccatgccaaaatcagctatcttaggattcatct 279  Q
    ||||||||||| ||| | |||| |||| |||| ||| | |||||||| || |||  || ||| ||||||||||||||||| |  ||||||| |||||  |    
T  28874533 aacacttactaggtttcaacaactctacttgtatttgcttgggtttgatccacaagaataagtcttgccatgccaaaatctgagatcttagcattcacgt 28874632  T
Q  280 cttcatccaagagaatattgcttgctttgag 310  Q
    |||| || |||||||| ||||||||||||||    
T  28874633 cttcgtctaagagaatgttgcttgctttgag 28874663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 28828702 - 28828775
Alignment:
Q  1 ccaaaactaaagacatcggattttactgaaaactgtccgtgcattacatactcaggtgccgtatatccactaca 74  Q
    ||||||| ||||||||| ||||| || ||||| | ||| ||||||||||||||||||||| | |||||||||||    
T  28828702 ccaaaaccaaagacatctgatttcaccgaaaattctccatgcattacatactcaggtgccatgtatccactaca 28828775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 27368344 - 27368414
Alignment:
Q  1 ccaaaactaaagacatcggattttactgaaaactgtccgtgcattacatactcaggtgccgtatatccact 71  Q
    ||||||||| ||||||| |||||||| ||||| | ||| |||||  |||||||||||||| ||||||||||    
T  27368344 ccaaaactatagacatctgattttaccgaaaattctccatgcatcgcatactcaggtgccatatatccact 27368414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 310
Target Start/End: Original strand, 28860026 - 28860093
Alignment:
Q  243 cttgccatgccaaaatcagctatcttaggattcatctcttcatccaagagaatattgcttgctttgag 310  Q
    ||||||||||||||||| |  ||||||| |||||| ||||| || | |||||| ||||||||||||||    
T  28860026 cttgccatgccaaaatctgaaatcttagcattcatgtcttcgtctaggagaatgttgcttgctttgag 28860093  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 28874400 - 28874444
Alignment:
Q  30 aaactgtccgtgcattacatactcaggtgccgtatatccactaca 74  Q
    ||||| ||| ||||||||||||||||||||| ||||||| |||||    
T  28874400 aaactctccatgcattacatactcaggtgccatatatccgctaca 28874444  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 3094956 - 3094891
Alignment:
Q  242 ccttgccatgccaaaatcagctatcttaggattcatctcttcatccaagagaatattgcttgcttt 307  Q
    ||||||||  |||||||||| ||| || ||||||||||||| ||| ||||||| ||| ||||||||    
T  3094956 ccttgccaatccaaaatcagatatttttggattcatctcttgatctaagagaacattacttgcttt 3094891  T

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