View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18884_low_18 (Length: 287)
Name: NF18884_low_18
Description: NF18884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18884_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 33827610 - 33827872
Alignment:
| Q |
1 |
ctcttaagcccagtgcttcgtgcacgcctcagtcaataaccgataagtttacttgttctctattctattatatttagagttctattaatttgatgctaat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33827610 |
ctcttaagcccagtgcttcgtgcacgcctcagtcaatgaccgataaatttacttgttctctattctattatatttagagttctattaatttgatgctaat |
33827709 |
T |
|
| Q |
101 |
atttcttgttacctattaccttataataattctctgtctaatttttcctacaactttcacaaaactttaatggtgataagggtgctaattaatttgatga |
200 |
Q |
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||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33827710 |
atttcttattacttattaccttataatatttctctgtctaatttttcctacaactttcacaaaactttaatggtgataagggtgctaattaatttgatga |
33827809 |
T |
|
| Q |
201 |
attcaattcatggtgatggtggtaaatgtgtgattcattcaaggctcatgagcacatatattt |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33827810 |
attcaattcatggtgatggtggtaaatgtgtgattcattcaaggctcatgagcacatatattt |
33827872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 47833922 - 47834074
Alignment:
| Q |
1 |
ctcttaagcccagtgcttcgtgcacgcctcagtcaataaccgataagtttacttgttctctattctattatatttagagttctattaatttgatgctaat |
100 |
Q |
| |
|
|||||||||||| |||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
47833922 |
ctcttaagcccaatgcttcatgcatgcctcagtcaataatcgataagtttacttgttctctattctattatatttagagatctattaatttgatgctaat |
47834021 |
T |
|
| Q |
101 |
atttcttgttacctattaccttataataattctctgtctaatttttcctacaa |
153 |
Q |
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|||||| ||||| |||||||||||||||||||| |||||| |||||||||||| |
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|
| T |
47834022 |
atttctcgttacttattaccttataataattctatgtctactttttcctacaa |
47834074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 353119 - 353264
Alignment:
| Q |
1 |
ctcttaagcccagtgcttcgtgcacgcctcagtcaataaccgataagtttacttgttctctattctattatatttagagttctattaatttgatgctaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
353119 |
ctcttaagcccagtgcttcgtgcacgcctcagtcaataatcgatgagtttacttattctctattctattgtatttagaattctattaatttgatgctaat |
353218 |
T |
|
| Q |
101 |
atttcttgttacctattaccttataataattctctgtctaattttt |
146 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||| ||||| |
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|
| T |
353219 |
atttcttgttgtttattaccttataataattctatgtctatttttt |
353264 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 53837550 - 53837398
Alignment:
| Q |
1 |
ctcttaagcccagtgcttcgtgcacgcctcagtcaataaccgataagtttacttgttctctattctattatatttagagttctattaatttgatgctaat |
100 |
Q |
| |
|
|||||||||||| | |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
53837550 |
ctcttaagcccaatacttcatgcacgcctcagtcaataatcgataagtttacttgttctctattctattatgtttagagttctattaatttgatgctaat |
53837451 |
T |
|
| Q |
101 |
atttcttgttacctattaccttataataattctctgtctaatttttcctacaa |
153 |
Q |
| |
|
||||||| || | |||||||||||||||||| | |||||| ||| |||||||| |
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|
| T |
53837450 |
atttcttattgcttattaccttataataattttatgtctactttctcctacaa |
53837398 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 53833952 - 53833815
Alignment:
| Q |
1 |
ctcttaagcccagtgcttcgtgcacgcctcagtcaataaccgataagtttacttgttctctattctattatatttagagttctattaatttgatgctaat |
100 |
Q |
| |
|
||||| ||||||||||||| ||||||||||| |||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||| |
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|
| T |
53833952 |
ctcttcagcccagtgcttcatgcacgcctcaaccaataatcgataagtttagttgttctctattatattatatttagagttctattaatttgatgttaat |
53833853 |
T |
|
| Q |
101 |
atttcttgttacctattaccttataataattctctgtc |
138 |
Q |
| |
|
||||||| || | |||||||||||||||||||| |||| |
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|
| T |
53833852 |
atttcttattgcttattaccttataataattctatgtc |
53833815 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 23 - 131
Target Start/End: Original strand, 27648486 - 27648594
Alignment:
| Q |
23 |
cacgcctcagtcaataaccgataagtttacttgttctctattctattatatttagagttctattaatttgatgctaatatttcttgttacctattacctt |
122 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
27648486 |
cacgcctcaatcaataatcgataagtttacttgttctctattctattatatttagagctctattaatttgatgctaatatttcttgttacttattacctt |
27648585 |
T |
|
| Q |
123 |
ataataatt |
131 |
Q |
| |
|
||||||||| |
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|
| T |
27648586 |
ataataatt |
27648594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 10 - 133
Target Start/End: Complemental strand, 36338947 - 36338824
Alignment:
| Q |
10 |
ccagtgcttcgtgcacgcctcagtcaataaccgataagtttacttgttctctattctattatatttagagttctattaatttgatgctaatatttcttgt |
109 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
36338947 |
ccagtgcttcgtgcacgcctcagtcaatattcgataagtttacatattctctattctattgtatttagagttctattaatttgatgctaataattcttgc |
36338848 |
T |
|
| Q |
110 |
tacctattaccttataataattct |
133 |
Q |
| |
|
| ||||||||||||||||||||| |
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|
| T |
36338847 |
tgtctattaccttataataattct |
36338824 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 54572973 - 54573047
Alignment:
| Q |
1 |
ctcttaagcccagtgcttcgtgcacgcctcagtcaataaccgataagtttacttgttctctattctattatattt |
75 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| |
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|
| T |
54572973 |
ctcttaagtccagtgcttcgtgcacgcctcagtcaataatcgataagtttacttattctctattctattgtattt |
54573047 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 152
Target Start/End: Original strand, 54573488 - 54573544
Alignment:
| Q |
97 |
taatatttcttgttacctat-taccttataataattctctgtctaatttttcctaca |
152 |
Q |
| |
|
|||||||| |||||| ||| ||||||||||||||||| ||||||| |||||||||| |
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|
| T |
54573488 |
taatattttttgttatttatgtaccttataataattctatgtctaaattttcctaca |
54573544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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