View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18884_low_19 (Length: 256)
Name: NF18884_low_19
Description: NF18884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18884_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 27046071 - 27045839
Alignment:
| Q |
17 |
acctgtgtgggaaagagagagactagttggtgcttcaacaagtaccaaacaaccacttc------------aaccaaaagaacctattgcattttcacct |
104 |
Q |
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| T |
27046071 |
acctgtgtgggaaagagagagactagttggggcttcaacaagtaccaaacaaccacttccaccattacttcaaccaaaagaacctattgcattttcacct |
27045972 |
T |
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| Q |
105 |
ttagttcaaccagaaacagttattaaaatctattgttttaaggttgagaatgaggtgatnnnnnnncttaagatgagtttgatgaaggaaggtgatagtg |
204 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
27045971 |
ttagttcaaccaaaaacagttattaaaatctattgttttaaggttgagaatgaggtgataaaaagacttaagatgagtttgatgaaggaaggtggtagtg |
27045872 |
T |
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| Q |
205 |
aaagtgaaccagttacaacttatgagtcacttg |
237 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
27045871 |
aaagtgaaccagttacaacttatgagtcacttg |
27045839 |
T |
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