View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18884_low_2 (Length: 795)
Name: NF18884_low_2
Description: NF18884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18884_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 423; Significance: 0; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 183 - 779
Target Start/End: Complemental strand, 1695214 - 1694614
Alignment:
| Q |
183 |
gattacctaattattaatgttaaccattcatattatgctatttttgtctaatttcagaagaagctgctgctttatcttctcatagaggctgcnnnnnnng |
282 |
Q |
| |
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|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1695214 |
gattacctaattattaatgtaaaccattcttattatgctatttttgtctaatttcagaagaagctgctgctttatcttctcatagaggctgctttttttg |
1695115 |
T |
|
| Q |
283 |
ctatcattgttctgataacaatgttggcattacatggcactaccaagaggtctttaattgttgggattatttgtgatatcttcaacatattgatgtatgc |
382 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1695114 |
ctatcattgttctgataacaatgttggcattacatggcactaccaagaggtctttaattgttgggattatttgtgatatcttcaacatattgatgtatgc |
1695015 |
T |
|
| Q |
383 |
ttctcctcttactatcatggtaagtaaagtctattccattaat------ttcagatcatatgaagattatactgtattttctctaaacttgttacatatg |
476 |
Q |
| |
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|||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1695014 |
ttctcctcttacgatcatggtaagtaacttctattccattaattttatattcagatcatatgaagattatactgtattttctctaaacttgttac----- |
1694920 |
T |
|
| Q |
477 |
aatatatgatgaacaggcaacggttataagaaccaagagtgtgaaatacatgccattctggctctctcttaccaacttcctcaatggactttgctggaca |
576 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1694919 |
---atatgatgaacaggcaacggttataagaaccaagagtgtgaaatacatgccattctggctctctcttaccaacttcctcaatggactttgctggaca |
1694823 |
T |
|
| Q |
577 |
acatatgctctgctccacccctttgacatttatgttctggtaattcatttaatttatattcctatagtattgttgtgacttgtgagttaat--------- |
667 |
Q |
| |
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| T |
1694822 |
acatatgctctgctccacccctttgacatttatgttctgg---------taatttatattcctatagtattgttgtgatttgtgagttaataattgtatg |
1694732 |
T |
|
| Q |
668 |
------aattggatgaatgatttatacttaacccatgttattaatatacatttttactgattattgcagatcagcaatggtattggagtaatctctggaa |
761 |
Q |
| |
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|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1694731 |
taattcaattggattaaagatttatacttaacccatgttattaatatacatttttactgattattgcagatcagtaatggtattggagtaatctctggaa |
1694632 |
T |
|
| Q |
762 |
ctgttcagctcatactat |
779 |
Q |
| |
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|| ||||||||||||||| |
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| T |
1694631 |
ctattcagctcatactat |
1694614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 287 - 779
Target Start/End: Complemental strand, 1684687 - 1684193
Alignment:
| Q |
287 |
cattgttctgataacaatgttggcattacatggcactaccaagaggtctttaattgttgggattatttgtgatatcttcaacatattgatgtatgcttct |
386 |
Q |
| |
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||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||| ||| |||||||| |||||||||||||||||||| |||| |
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| T |
1684687 |
cattgttctgataacaatgttggtatttcatggcactaccggcaggtctttaattgttggtattgtttgtgatgtcttcaacatattgatgtatatttct |
1684588 |
T |
|
| Q |
387 |
cctcttactatcatggtaagtaaagtctattccattaatttcagatc---atatgaagattatactgtat------------tttctctaaacttgttac |
471 |
Q |
| |
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|||||||| |||||||||||||| ||||||||| ||| || | || ||||||| ||||||||||| |||||||||||||||||| |
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| T |
1684587 |
cctcttacaatcatggtaagtaacttctattccaataactttatattcagatatgaa--ttatactgtatcttataaagtattttctctaaacttgttac |
1684490 |
T |
|
| Q |
472 |
atatgaatatatgatgaacaggcaacggttataagaaccaagagtgtgaaatacatgccattctggctctctcttaccaacttcctcaatggactttgct |
571 |
Q |
| |
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|||||| |||||| ||||| || |||||||| || ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
1684489 |
atatga---tatgatcaacagaaaaaggttataacgactaagagtgtgaaatacatgccattctggctctctgtgtttaacttcctcaatggactttgct |
1684393 |
T |
|
| Q |
572 |
ggacaacatatgctctgctccacccctttgacatttatgttctggtaattcatttaatttatattcctatagtattgttgtgacttgtgagttaataatt |
671 |
Q |
| |
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|||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1684392 |
ggacaacatatgctctgctccatccctttgacctttatgttctggtaatt---------tatattcctatagtattgttgtgacttgtgagttaataatt |
1684302 |
T |
|
| Q |
672 |
ggatgaatgatttatacttaacccatgtt-attaatatacatttttactgattattgcagatcagcaatggtattggagtaatctctggaactgttcagc |
770 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||| ||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1684301 |
ggatgaatgatttatacttaacccatattaattaatatacactttcactgactactgcagatcagcaatggtattggagtaatctctggaactgttcagc |
1684202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 16 - 149
Target Start/End: Complemental strand, 1695381 - 1695248
Alignment:
| Q |
16 |
ttttgtgcacccaaacagccttttggtagtcactatcaatggtgttggacttgtttttgaggttgtctatcttaccatcttttttatctacgccaacaag |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1695381 |
ttttgtgcacccaaacagccttttggtagtcactatcaatggtgttggacttgtttttgaggttgtctatcttaccatcttttttatctatgccaacaag |
1695282 |
T |
|
| Q |
116 |
aaaggaagggtacgtatgctttcacactataagc |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
1695281 |
aaaggaagggtacgtatgctttcacactataagc |
1695248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 16 - 145
Target Start/End: Complemental strand, 1971534 - 1971405
Alignment:
| Q |
16 |
ttttgtgcacccaaacagccttttggtagtcactatcaatggtgttggacttgtttttgaggttgtctatcttaccatcttttttatctacgccaacaag |
115 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||| |
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| T |
1971534 |
ttttgtgcacccaaacagccttttggtcgtcaccatcaatggtgttggacttgttttcaagtttgtctatcttaccatcttttttatctatgccaacaag |
1971435 |
T |
|
| Q |
116 |
aaaggaagggtacgtatgctttcacactat |
145 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
1971434 |
aaaggaagggtacgtatgctttcacactat |
1971405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 16 - 145
Target Start/End: Complemental strand, 1685054 - 1684925
Alignment:
| Q |
16 |
ttttgtgcacccaaacagccttttggtagtcactatcaatggtgttggacttgtttttgaggttgtctatcttaccatcttttttatctacgccaacaag |
115 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| | |||||||||||||||||| ||||||||| ||||||||| |
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|
| T |
1685054 |
ttttgtgcacccaaacagccttttggtcgtcaccatcaatggtgttggacttgttttcatgattgtctatcttaccatctattttatctatgccaacaag |
1684955 |
T |
|
| Q |
116 |
aaaggaagggtacgtatgctttcacactat |
145 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |
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|
| T |
1684954 |
aaaggaagggtatgtatgctttcacactat |
1684925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 479 - 627
Target Start/End: Complemental strand, 1700012 - 1699864
Alignment:
| Q |
479 |
tatatgatgaacaggcaacggttataagaaccaagagtgtgaaatacatgccattctggctctctcttaccaacttcctcaatggactttgctggacaac |
578 |
Q |
| |
|
||||| |||||||||| | |||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| | ||||||||||| |
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|
| T |
1700012 |
tatataatgaacaggccaaggttataaaaaccaagagtgtgaaatacatgccattttggctctctctaaccaacttcctcaatggtttgtgctggacaac |
1699913 |
T |
|
| Q |
579 |
atatgctctgctccacccctttgacatttatgttctggtaattcattta |
627 |
Q |
| |
|
||||||||| ||||||| || || |||||||| |||||||| ||||| |
|
|
| T |
1699912 |
atatgctctcatccacccattggatatttatgtcttggtaattaattta |
1699864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 231 - 407
Target Start/End: Complemental strand, 1700272 - 1700096
Alignment:
| Q |
231 |
taatttcagaagaagctgctgctttatcttctcatagaggctgcnnnnnnngctatcattgttctgataacaatgttggcattacatggcactaccaaga |
330 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||| |||||| ||| |||||||||| ||||||||||||||| | |||||||||| || | |
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|
| T |
1700272 |
taatttcagaaaaagttgctgctttatcttctcatcgaggctattttctttgctgtcattgttctaataacaatgttggcacttcatggcactaaaaaaa |
1700173 |
T |
|
| Q |
331 |
ggtctttaattgttgggattatttgtgatatcttcaacatattgatgtatgcttctcctcttactatcatggtaagt |
407 |
Q |
| |
|
| || ||||||||||| || | |||||| ||||||| | |||||||||| ||||||||||| |||||||||||| |
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|
| T |
1700172 |
gatcgttaattgttggtgttctatgtgatgtcttcaatgtcatgatgtatgcatctcctcttacaatcatggtaagt |
1700096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 16 - 110
Target Start/End: Complemental strand, 1700826 - 1700732
Alignment:
| Q |
16 |
ttttgtgcacccaaacagccttttggtagtcactatcaatggtgttggacttgtttttgaggttgtctatcttaccatcttttttatctacgcca |
110 |
Q |
| |
|
||||||||||||||||||| ||| || || |||||||| |||||||| || | ||||||||||||||||||||||||||||||||||| |||| |
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| T |
1700826 |
ttttgtgcacccaaacagcactttagttctctctatcaatagtgttggaattctctttgaggttgtctatcttaccatcttttttatctatgcca |
1700732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 480 - 621
Target Start/End: Complemental strand, 1674322 - 1674181
Alignment:
| Q |
480 |
atatgatgaacaggcaacggttataagaaccaagagtgtgaaatacatgccattctggctctctcttaccaacttcctcaatggactttgctggacaaca |
579 |
Q |
| |
|
|||| ||||||||| || ||||||| ||| ||||||||||||||||||||||||| || |||||| | | ||| || |||||| | || ||||||||| |
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|
| T |
1674322 |
atataatgaacaggaaaatgttataaaaacaaagagtgtgaaatacatgccattcttgccctctctggctatctttcttaatggattgtgttggacaaca |
1674223 |
T |
|
| Q |
580 |
tatgctctgctccacccctttgacatttatgttctggtaatt |
621 |
Q |
| |
|
|||||||| || ||||||| ||||||||| | ||||||||| |
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|
| T |
1674222 |
tatgctctcatcaaccccttcgacatttatctcctggtaatt |
1674181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 350 - 422
Target Start/End: Complemental strand, 1971087 - 1971015
Alignment:
| Q |
350 |
tatttgtgatatcttcaacatattgatgtatgcttctcctcttactatcatggtaagtaaagtctattccatt |
422 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||||| ||| |||||||||| ||||||||||| |
|
|
| T |
1971087 |
tatttgtgatatcttccccatattgatgtatgtctctcctcttaccatcgtggtaagtaacttctattccatt |
1971015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 734 - 779
Target Start/End: Complemental strand, 1699335 - 1699290
Alignment:
| Q |
734 |
agcaatggtattggagtaatctctggaactgttcagctcatactat |
779 |
Q |
| |
|
||||||||||||||||| | ||||||| ||||||||||||||||| |
|
|
| T |
1699335 |
agcaatggtattggagtggtttctggaattgttcagctcatactat |
1699290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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