View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18884_low_23 (Length: 225)

Name: NF18884_low_23
Description: NF18884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18884_low_23
NF18884_low_23
[»] chr1 (2 HSPs)
chr1 (1-214)||(2569153-2569379)
chr1 (3-55)||(46435465-46435517)
[»] chr5 (5 HSPs)
chr5 (6-55)||(11607534-11607583)
chr5 (2-55)||(19357262-19357315)
chr5 (2-55)||(33858538-33858591)
chr5 (6-51)||(1826381-1826426)
chr5 (6-55)||(33271736-33271785)
[»] chr6 (4 HSPs)
chr6 (3-55)||(5403876-5403928)
chr6 (11-55)||(10503259-10503303)
chr6 (6-51)||(1211848-1211893)
chr6 (11-55)||(32644838-32644881)
[»] chr7 (6 HSPs)
chr7 (1-55)||(48250273-48250327)
chr7 (6-55)||(48072509-48072558)
chr7 (7-55)||(31306868-31306916)
chr7 (2-40)||(35341654-35341692)
chr7 (2-55)||(32694570-32694623)
chr7 (3-39)||(40856964-40857000)
[»] chr8 (3 HSPs)
chr8 (6-55)||(24337830-24337879)
chr8 (6-51)||(41179567-41179612)
chr8 (2-55)||(11254028-11254081)
[»] chr3 (5 HSPs)
chr3 (2-51)||(44380372-44380421)
chr3 (6-55)||(37742847-37742896)
chr3 (3-55)||(19619217-19619269)
chr3 (6-58)||(33509802-33509854)
chr3 (2-53)||(35094666-35094717)
[»] chr2 (6 HSPs)
chr2 (2-51)||(4779703-4779752)
chr2 (2-55)||(21606157-21606210)
chr2 (2-55)||(37357917-37357970)
chr2 (6-55)||(23863803-23863852)
chr2 (6-55)||(34392081-34392130)
chr2 (2-55)||(25275622-25275675)
[»] chr4 (8 HSPs)
chr4 (3-55)||(12473823-12473875)
chr4 (3-55)||(12528232-12528284)
chr4 (1-51)||(51812031-51812081)
chr4 (2-51)||(35869575-35869624)
chr4 (2-55)||(55590589-55590642)
chr4 (13-51)||(1796679-1796717)
chr4 (6-51)||(35781031-35781076)
chr4 (3-47)||(22343456-22343500)
[»] scaffold0229 (1 HSPs)
scaffold0229 (6-55)||(13005-13054)
[»] scaffold0519 (1 HSPs)
scaffold0519 (2-55)||(11312-11365)


Alignment Details
Target: chr1 (Bit Score: 112; Significance: 9e-57; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 2569153 - 2569379
Alignment:
Q  1 tgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctatttgtcagcgtactttggatgttggaac----------gtctttgc 90  Q
    |||| |||||||||||| | |||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||          ||||||||    
T  2569153 tgtggcacattctaattaggcaatagtatatatcattatgttacacaagtgctatccgtcagcgtactttggatgttggaacttaatttgatgtctttgc 2569252  T
Q  91 atgctcttgcttgactcatnnnnnnntaa-tattggtatttatataaaaaaggcaaaagagaaaccaattaataattagataagagaacaaaaatcacac 189  Q
    |||||||||||| ||||||        || || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2569253 atgctcttgcttcactcataaaaaaaaaaatagtggtatttatagaaaaaaggcaaaagagaaaccaattaataattagataagagaacaaaaatcacac 2569352  T
Q  190 --tggtttccaattatattacatgatg 214  Q
      |||||||||||||||||||||||||    
T  2569353 tatggtttccaattatattacatgatg 2569379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 46435517 - 46435465
Alignment:
Q  3 tgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 55  Q
    ||||||||||||||||| |||||||||||| ||||||| ||||||||| ||||    
T  46435517 tgacacattctaattgggcaatggtatataccattatggtacacaagtcctat 46435465  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 11607583 - 11607534
Alignment:
Q  6 cacattctaattggacaatggtatatatcattatgttacacaagtgctat 55  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11607583 cacattctaattggacaatggtatatatcattatggtacacaagtgctat 11607534  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 19357315 - 19357262
Alignment:
Q  2 gtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 55  Q
    |||||||||||||||||||||||| |||||| ||||||| ||||||||||||||    
T  19357315 gtgacacattctaattggacaatgatatataccattatggtacacaagtgctat 19357262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 33858591 - 33858538
Alignment:
Q  2 gtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 55  Q
    |||||||||||||||||| |||||||||||| ||||||| ||||||||||||||    
T  33858591 gtgacacattctaattgggcaatggtatataccattatggtacacaagtgctat 33858538  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 1826381 - 1826426
Alignment:
Q  6 cacattctaattggacaatggtatatatcattatgttacacaagtg 51  Q
    |||||| |||||| |||||| |||||||||||||| ||||||||||    
T  1826381 cacattttaattgaacaatgatatatatcattatgatacacaagtg 1826426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 33271736 - 33271785
Alignment:
Q  6 cacattctaattggacaatggtatatatcattatgttacacaagtgctat 55  Q
    |||||||||||||| |||| ||||||| ||||||| |||| |||||||||    
T  33271736 cacattctaattgggcaatagtatataccattatggtacataagtgctat 33271785  T

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Target: chr6 (Bit Score: 45; Significance: 8e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 5403928 - 5403876
Alignment:
Q  3 tgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 55  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  5403928 tgacacattctaattggacaatggtatataccattatggtacacaagtgctat 5403876  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 10503303 - 10503259
Alignment:
Q  11 tctaattggacaatggtatatatcattatgttacacaagtgctat 55  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||    
T  10503303 tctaattggacaatggtatataccattatggtacacaagtgctat 10503259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 1211893 - 1211848
Alignment:
Q  6 cacattctaattggacaatggtatatatcattatgttacacaagtg 51  Q
    ||||||||||| || |||||||||||| ||||||| ||||||||||    
T  1211893 cacattctaatggggcaatggtatataccattatggtacacaagtg 1211848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 32644881 - 32644838
Alignment:
Q  11 tctaattggacaatggtatatatcattatgttacacaagtgctat 55  Q
    |||||||| ||||||||||||| ||||||| ||||||||||||||    
T  32644881 tctaattgaacaatggtatataccattatg-tacacaagtgctat 32644838  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 48250273 - 48250327
Alignment:
Q  1 tgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 55  Q
    |||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  48250273 tgtgtcacattctaattggacaatggtatataccattatggtacacaagtgctat 48250327  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 48072509 - 48072558
Alignment:
Q  6 cacattctaattggacaatggtatatatcattatgttacacaagtgctat 55  Q
    |||||||||||||| |||||||||||| ||||||| ||||||||||||||    
T  48072509 cacattctaattgggcaatggtatataccattatggtacacaagtgctat 48072558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 31306916 - 31306868
Alignment:
Q  7 acattctaattggacaatggtatatatcattatgttacacaagtgctat 55  Q
    ||||||||||||||||||| |||||||||||||| ||||||| ||||||    
T  31306916 acattctaattggacaatgatatatatcattatggtacacaaatgctat 31306868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 35341654 - 35341692
Alignment:
Q  2 gtgacacattctaattggacaatggtatatatcattatg 40  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  35341654 gtgacacattctaattggacaatgatatatatcattatg 35341692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 32694623 - 32694570
Alignment:
Q  2 gtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 55  Q
    |||||||||||||||| | |||||||||||| ||||||  ||||||||||||||    
T  32694623 gtgacacattctaattaggcaatggtatataccattatagtacacaagtgctat 32694570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 40856964 - 40857000
Alignment:
Q  3 tgacacattctaattggacaatggtatatatcattat 39  Q
    ||||||||||||||||||||||| |||||| ||||||    
T  40856964 tgacacattctaattggacaatgatatataccattat 40857000  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 24337879 - 24337830
Alignment:
Q  6 cacattctaattggacaatggtatatatcattatgttacacaagtgctat 55  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  24337879 cacattctaattggacaatggtatataccattatggtacacaagtgctat 24337830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 41179612 - 41179567
Alignment:
Q  6 cacattctaattggacaatggtatatatcattatgttacacaagtg 51  Q
    |||||||||||||| |||||||||||| ||||||| ||||||||||    
T  41179612 cacattctaattgggcaatggtatataccattatggtacacaagtg 41179567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 11254081 - 11254028
Alignment:
Q  2 gtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 55  Q
    |||||||||||||| ||  |||||||||||| ||||||| ||||||| ||||||    
T  11254081 gtgacacattctaactgagcaatggtatataccattatggtacacaaatgctat 11254028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 44380372 - 44380421
Alignment:
Q  2 gtgacacattctaattggacaatggtatatatcattatgttacacaagtg 51  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  44380372 gtgacacattctaattggacaatggtatataccattatggtacacaagtg 44380421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 37742847 - 37742896
Alignment:
Q  6 cacattctaattggacaatggtatatatcattatgttacacaagtgctat 55  Q
    |||||| ||||||| |||||||||||| ||||||||||||||||||||||    
T  37742847 cacattataattgggcaatggtatataccattatgttacacaagtgctat 37742896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 19619217 - 19619269
Alignment:
Q  3 tgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 55  Q
    ||||||||| ||||||| |||||||||||| ||||||| |||||| |||||||    
T  19619217 tgacacattttaattgggcaatggtatataccattatggtacacatgtgctat 19619269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 33509802 - 33509854
Alignment:
Q  6 cacattctaattggacaatggtatatatcattatgttacacaagtgctatttg 58  Q
    |||||||||||| ||||||| |||||| ||||||  |||||||||||||||||    
T  33509802 cacattctaattagacaatgatatataccattattgtacacaagtgctatttg 33509854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 35094666 - 35094717
Alignment:
Q  2 gtgacacattctaattggacaatggtatatatcattatgttacacaagtgct 53  Q
    |||||||||||||||||||||||| || ||| ||||||| ||||||| ||||    
T  35094666 gtgacacattctaattggacaatgatacataccattatggtacacaaatgct 35094717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 4779703 - 4779752
Alignment:
Q  2 gtgacacattctaattggacaatggtatatatcattatgttacacaagtg 51  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  4779703 gtgacacattctaattggacaatggtatataccattatgatacacaagtg 4779752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 21606157 - 21606210
Alignment:
Q  2 gtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 55  Q
    ||||||||||||||||||||||||||||||| ||||||| |||| |||||||||    
T  21606157 gtgacacattctaattggacaatggtatataccattatgatacagaagtgctat 21606210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 37357970 - 37357917
Alignment:
Q  2 gtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 55  Q
    |||||||||||||||||||||||||||||||  |||||| ||||||||||||||    
T  37357970 gtgacacattctaattggacaatggtatatactattatgatacacaagtgctat 37357917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 23863852 - 23863803
Alignment:
Q  6 cacattctaattggacaatggtatatatcattatgttacacaagtgctat 55  Q
    |||||||||||||||||||| |||||||||||||| ||||| ||||||||    
T  23863852 cacattctaattggacaatgatatatatcattatggtacactagtgctat 23863803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 34392130 - 34392081
Alignment:
Q  6 cacattctaattggacaatggtatatatcattatgttacacaagtgctat 55  Q
    |||| |||||||||||||||||||||| ||||||| ||||||||||||||    
T  34392130 cacaatctaattggacaatggtatataccattatggtacacaagtgctat 34392081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 25275675 - 25275622
Alignment:
Q  2 gtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 55  Q
    |||| ||||||||||||||||||| |||||| ||||||| |||| |||||||||    
T  25275675 gtgatacattctaattggacaatgatatataccattatgatacagaagtgctat 25275622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 12473823 - 12473875
Alignment:
Q  3 tgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 55  Q
    ||||||||||||||||  |||||||||||| ||||||| ||||||||||||||    
T  12473823 tgacacattctaattgagcaatggtatataccattatggtacacaagtgctat 12473875  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 12528232 - 12528284
Alignment:
Q  3 tgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 55  Q
    ||||||||||||||||  |||||||||||| ||||||| ||||||||||||||    
T  12528232 tgacacattctaattgagcaatggtatataccattatggtacacaagtgctat 12528284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 51812031 - 51812081
Alignment:
Q  1 tgtgacacattctaattggacaatggtatatatcattatgttacacaagtg 51  Q
    |||||||||||||||||||| ||||||||||| ||||||| || |||||||    
T  51812031 tgtgacacattctaattggataatggtatataccattatgatatacaagtg 51812081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 35869624 - 35869575
Alignment:
Q  2 gtgacacattctaattggacaatggtatatatcattatgttacacaagtg 51  Q
    ||||||||||||||||| ||||||||||||| ||||||| || |||||||    
T  35869624 gtgacacattctaattgaacaatggtatataccattatggtagacaagtg 35869575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 55590589 - 55590642
Alignment:
Q  2 gtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 55  Q
    |||||||||||||||||| |||||| ||||| ||||||| ||| ||||||||||    
T  55590589 gtgacacattctaattgggcaatggaatataccattatggtacgcaagtgctat 55590642  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 1796679 - 1796717
Alignment:
Q  13 taattggacaatggtatatatcattatgttacacaagtg 51  Q
    |||||||||||||||||||| ||||||| ||||||||||    
T  1796679 taattggacaatggtatataccattatggtacacaagtg 1796717  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 35781031 - 35781076
Alignment:
Q  6 cacattctaattggacaatggtatatatcattatgttacacaagtg 51  Q
    |||||||||||||| |||||||||||| ||||||| ||| ||||||    
T  35781031 cacattctaattgggcaatggtatataccattatggtacgcaagtg 35781076  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 22343456 - 22343500
Alignment:
Q  3 tgacacattctaattggacaatggtatatatcattatgttacaca 47  Q
    |||||||||||||||| |||||| |||||| ||||||| ||||||    
T  22343456 tgacacattctaattgaacaatgatatataccattatggtacaca 22343500  T

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Target: scaffold0229 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 13054 - 13005
Alignment:
Q  6 cacattctaattggacaatggtatatatcattatgttacacaagtgctat 55  Q
    ||||||||||| || |||||||||||| ||||||| ||||||||||||||    
T  13054 cacattctaatggggcaatggtatataccattatggtacacaagtgctat 13005  T

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Target: scaffold0519 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 11312 - 11365
Alignment:
Q  2 gtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 55  Q
    |||||||||||||| ||  |||||||||||| ||||||| ||||||| ||||||    
T  11312 gtgacacattctaactgagcaatggtatataccattatggtacacaaatgctat 11365  T

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