View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18884_low_3 (Length: 788)
Name: NF18884_low_3
Description: NF18884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18884_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 18 - 587
Target Start/End: Complemental strand, 2401166 - 2400602
Alignment:
| Q |
18 |
agagtttggttaataatttctcctctctaaaa---ttcatagctaggaaagcctagtccactccttttccaaagcaa-ttgcccaaatgttttcttccct |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||| ||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
2401166 |
agagtttggttaataatttctcctctctaaaaaaattcatagctaggaaagcat-gtccacaccttttccaaagcaaattggccaaatgttttcttccct |
2401068 |
T |
|
| Q |
114 |
tccaacattgttgtctaccttattgtactctctctattgtggtccatccttttccttccttatatctctttcacccctttctccatttttgcataccata |
213 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2401067 |
tccaacattgttgtctaccttactgtactctctctattgtggtccatccttttccttccttatatctctttcacccctttctccatttttgcataccata |
2400968 |
T |
|
| Q |
214 |
tatcatatcttacacttctttttctagtccttccattctccttccactatatatatagcttgtgtcgtctcaatcctctatatatagctattacatatgt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2400967 |
tatcatatcttacacttctttttctagtccttccattctccttccactatatatatagcttgtgtcgtctcaatcctctatatatagctattacatatgt |
2400868 |
T |
|
| Q |
314 |
tatagctaggaacaataattaaagcacttgcactttgaattagaacccattacactaatttagccaactagcttaattaaggatatgtctagtcgaagat |
413 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |
|
|
| T |
2400867 |
tatagctaggaacaataattaaagtacttgcactttga---agaacccattacactaatttagacaactagcttaattaaggatatgtctagtcgaaggt |
2400771 |
T |
|
| Q |
414 |
caaggcaacaatcaggtgtgtctacacggatttctgatgaccaaattatcgaccttgtttgcaaattgcgtcaacttgttcctgagattcgtaataggca |
513 |
Q |
| |
|
|||||||||||||||| | |||||| ||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2400770 |
caaggcaacaatcaggagggtctactcggatctctgatgaccaaatcatcgaccttgtttgcaaattgcgccaacttgttcctgagattcgtaataggcg |
2400671 |
T |
|
| Q |
514 |
atctgacaaggtactatagctatttcaatcactctatagtatagatacacactattcataaggatgttaaagtt |
587 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2400670 |
ctctgacaaggtactatagctatttcaatcactc-----tatagatacacactattcataaggatgttaaagtt |
2400602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 443 - 526
Target Start/End: Complemental strand, 3400556 - 3400473
Alignment:
| Q |
443 |
atttctgatgaccaaattatcgaccttgtttgcaaattgcgtcaacttgttcctgagattcgtaataggcaatctgacaaggta |
526 |
Q |
| |
|
||||||||||| ||||| ||||| ||||||| ||| || |||||||||||||||||||||||| |||||| || ||||||||| |
|
|
| T |
3400556 |
atttctgatgatcaaatcatcgaacttgtttccaagttacgtcaacttgttcctgagattcgtcataggcgttcagacaaggta |
3400473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University