View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18884_low_4 (Length: 667)
Name: NF18884_low_4
Description: NF18884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18884_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 17 - 314
Target Start/End: Complemental strand, 156650 - 156353
Alignment:
| Q |
17 |
aacaacttagagagagaatcagtctcatgtggtgttactttggtggagtcctccaccggtgggctgggtgagattgaacacagatggatcctgtagagat |
116 |
Q |
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| T |
156650 |
aacaacttagagagagaatcagtctcatgtggtgttactttggtggagtcctccaccggtgggctgggtgagattgaacacagatggatcctgtagagat |
156551 |
T |
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| Q |
117 |
ggtggtcatattggttgtggtggcatcattagaggaagcaatggtgagtggttgtgaggtttctccaagtatattgaagtatattggaatagaaggtgct |
216 |
Q |
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| T |
156550 |
ggtggtcatattggttgtggtggcatcattagaggaagcaatggtgagtggttgtgaggtttctccaagtatattgaagtatattggaatagaaggtgct |
156451 |
T |
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| Q |
217 |
tatttggcagaattgtggggagtgttggaagggctcatgtatgccagaaggttgcaatttcgatttattgaggtgcatgttgactccttagttgttgt |
314 |
Q |
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| T |
156450 |
tatttggcagaattgtggggagtgttggaagggcacatgtatgccagaaggttgcaatttcgatttattgaggtgcatgttgactccttagttgttgt |
156353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 522 - 651
Target Start/End: Complemental strand, 155964 - 155835
Alignment:
| Q |
522 |
atgatgtgaatatatattcctattactttctcggtaaagatctagattggtctcttgtataatttactgtttccacgaagctataggatttgatgaaagt |
621 |
Q |
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| T |
155964 |
atgatgtgaatatatattcctattactttctcggtaaagatctagattggtctcttgtataatttactgtttccacgaagctataggatttgatgaaagt |
155865 |
T |
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| Q |
622 |
tcaaaatatatagtcttgattcatgtggct |
651 |
Q |
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| T |
155864 |
tcaaaatatatagtcttgattcatgtggct |
155835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 328 - 414
Target Start/End: Complemental strand, 156217 - 156131
Alignment:
| Q |
328 |
catacgcttttagctaactatgattgttcgatggattcggggatctgattctttgatgtatgtcctagcaatattagtcttttattg |
414 |
Q |
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| T |
156217 |
catacgcttttagctaactatgattgttcgatggattcggggatctgattctttgatgtatgtcatagcaatattagtcttctattg |
156131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 414 - 455
Target Start/End: Complemental strand, 156089 - 156048
Alignment:
| Q |
414 |
gttgtaatctctttctttttgggcttaggccctcatcgatat |
455 |
Q |
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| T |
156089 |
gttgtaatctctttctttttgggcttaggccctcatcgatat |
156048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 200 - 314
Target Start/End: Complemental strand, 31976695 - 31976581
Alignment:
| Q |
200 |
ttggaatagaaggtgcttatttggcagaattgtggggagtgttggaagggctcatgtatgccagaaggttgcaatttcgatttattgaggtgcatgttga |
299 |
Q |
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||||||||| || || |||| |||||||||| || ||||||||||||||||||||||||| |||||||||| ||||||||||||||||| | |||||||| |
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| T |
31976695 |
ttggaataggagatgtttatctggcagaattatgtggagtgttggaagggctcatgtatgtcagaaggttgtaatttcgatttattgagttacatgttga |
31976596 |
T |
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| Q |
300 |
ctccttagttgttgt |
314 |
Q |
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|| |||| ||||||| |
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| T |
31976595 |
cttcttacttgttgt |
31976581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 241 - 314
Target Start/End: Complemental strand, 37054140 - 37054066
Alignment:
| Q |
241 |
ttggaagggctcatgta-tgccagaaggttgcaatttcgatttattgaggtgcatgttgactccttagttgttgt |
314 |
Q |
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| T |
37054140 |
ttggaaggggtcatgtaatgttagaaggttgcaattttgatttattgagttgcatgttgactccttagttattgt |
37054066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 336 - 408
Target Start/End: Complemental strand, 31976445 - 31976373
Alignment:
| Q |
336 |
tttagctaactatgattgttcgatggattcggggatctgattctttgatgtatgtcctagcaatattagtctt |
408 |
Q |
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||||||||| ||| ||||||||||||| || ||||| || || ||||||||||||| ||| |||||||||||| |
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| T |
31976445 |
tttagctaattataattgttcgatggagtcagggatatgtttttttgatgtatgtcgtagtaatattagtctt |
31976373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 451
Target Start/End: Complemental strand, 31976343 - 31976306
Alignment:
| Q |
414 |
gttgtaatctctttctttttgggcttaggccctcatcg |
451 |
Q |
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| T |
31976343 |
gttgtaatctctttctttttgggcttagactctcatcg |
31976306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 7e-23; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 219 - 306
Target Start/End: Complemental strand, 2909370 - 2909283
Alignment:
| Q |
219 |
tttggcagaattgtggggagtgttggaagggctcatgtatgccagaaggttgcaatttcgatttattgaggtgcatgttgactcctta |
306 |
Q |
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| T |
2909370 |
tttggtagaattatggggagtgttggaagatctcatgtatgctagaaggttgcaattttggtttattgagttgcatgttgactcctta |
2909283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 106
Target Start/End: Complemental strand, 2909421 - 2909374
Alignment:
| Q |
59 |
gtggagtcctccaccggtgggctgggtgagattgaacacagatggatc |
106 |
Q |
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| T |
2909421 |
gtggagtcctccactggtgggctgagtgagattgaacacagatggatc |
2909374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 340 - 407
Target Start/End: Complemental strand, 2909135 - 2909069
Alignment:
| Q |
340 |
gctaactatgattgttcgatggattcggggatctgattctttgatgtatgtcctagcaatattagtct |
407 |
Q |
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| T |
2909135 |
gctaactatggttgttcgatggatttgggggtctg-ttttttgatgtctatcctagcaatattagtct |
2909069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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