View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18884_low_9 (Length: 381)
Name: NF18884_low_9
Description: NF18884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18884_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 112 - 209
Target Start/End: Original strand, 24850536 - 24850633
Alignment:
| Q |
112 |
tcacctggataagattaataaaaattaattcgcaagaaagcttatccaagaaagttgtgtttttgagtttcgatattgagagtcatttcctttataac |
209 |
Q |
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| T |
24850536 |
tcacctggataagattaataaaaattaattcgcaagaaagcttatccaagaaagttgtgtttttgagtttcgatattgagagtcatttcctttataac |
24850633 |
T |
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Target: chr7; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 24850395 - 24850489
Alignment:
| Q |
19 |
tgctccgccgttgtgttatttgccttcacagtcgtcaccttcagagcatattctccattgttcacgtcatcaacactaaccttgagtgcgttgtc |
113 |
Q |
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| T |
24850395 |
tgctccgccgttgtgttatttgccttcacagtcgtcaccttcagagcatattctccattgttcacgtcatcaacactaaccttgagtgccttgtc |
24850489 |
T |
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