View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18885_high_1 (Length: 481)
Name: NF18885_high_1
Description: NF18885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18885_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 2e-96; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 270 - 473
Target Start/End: Original strand, 47294095 - 47294298
Alignment:
| Q |
270 |
atttgtatttagacaaagacttttagacaaggaaatatttctctttcgtccttttcattaaactaaagatgcagagcttgtaattagtttataattgcag |
369 |
Q |
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| T |
47294095 |
atttgtatttagacaaagacttttagacaaggaaatatttctctttcgtccttttcattaaactaaagatgcagagcttgtaattagtttataattgcag |
47294194 |
T |
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| Q |
370 |
gcaattgtttttctttgggtgtataatccaaatatttatatatacactaataattattaaatgatggaatttgttccannnnnnnacttgaatatccctt |
469 |
Q |
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| T |
47294195 |
gcaattgtttttctttgggtgtataatccaaatatttatatatacactaatcattattaaatgatggaatttgttccatttttttacttgaatatccctt |
47294294 |
T |
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| Q |
470 |
tgct |
473 |
Q |
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|||| |
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| T |
47294295 |
tgct |
47294298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 34 - 147
Target Start/End: Original strand, 47293858 - 47293972
Alignment:
| Q |
34 |
ttgttttatttt-ttgctattatgatagcttattataaacaattttcctaagttttctccctgcattattcaccatcttaagcacattggttcttacttt |
132 |
Q |
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| T |
47293858 |
ttgttttatttttttgctattatgatagcttattataaacaattttcctaagttttctccctgcactattcaccatcttaagcacattggttcttacttt |
47293957 |
T |
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| Q |
133 |
tgcatctgttttctc |
147 |
Q |
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| T |
47293958 |
tgcatctgttttctc |
47293972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 326 - 401
Target Start/End: Original strand, 56043786 - 56043861
Alignment:
| Q |
326 |
attaaactaaagatgcagagcttgtaattagtttataattgcaggcaattgtttttctttgggtgtataatccaaa |
401 |
Q |
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| T |
56043786 |
attaaactgaagatgcagaatgtataattagtttataattgcaggcaattgtttatgtttgggtgtataacccaaa |
56043861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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