View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18885_high_10 (Length: 241)

Name: NF18885_high_10
Description: NF18885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18885_high_10
NF18885_high_10
[»] chr2 (43 HSPs)
chr2 (17-226)||(19427257-19427449)
chr2 (35-195)||(14715652-14715813)
chr2 (41-200)||(42182889-42183048)
chr2 (41-197)||(28898061-28898217)
chr2 (34-168)||(44230850-44230982)
chr2 (42-197)||(24895291-24895444)
chr2 (41-213)||(31395453-31395625)
chr2 (38-109)||(45554564-45554635)
chr2 (41-198)||(15508914-15509071)
chr2 (41-147)||(18511283-18511389)
chr2 (42-213)||(5139969-5140140)
chr2 (34-109)||(15509029-15509104)
chr2 (36-146)||(1110193-1110303)
chr2 (156-201)||(45554590-45554635)
chr2 (41-197)||(4964697-4964853)
chr2 (41-109)||(12989191-12989259)
chr2 (122-165)||(21215377-21215420)
chr2 (115-194)||(21447178-21447257)
chr2 (38-109)||(28898031-28898102)
chr2 (159-201)||(6980235-6980277)
chr2 (42-198)||(37228499-37228656)
chr2 (36-109)||(37719829-37719902)
chr2 (158-207)||(42579771-42579820)
chr2 (114-224)||(42763772-42763888)
chr2 (122-194)||(864179-864251)
chr2 (42-106)||(6980235-6980299)
chr2 (41-109)||(26767873-26767941)
chr2 (92-196)||(38104299-38104403)
chr2 (36-112)||(44274345-44274421)
chr2 (45-112)||(14715627-14715694)
chr2 (155-194)||(19427358-19427397)
chr2 (115-198)||(37719860-37719943)
chr2 (41-107)||(11539423-11539489)
chr2 (158-200)||(11539447-11539489)
chr2 (41-110)||(17188067-17188134)
chr2 (51-149)||(17505881-17505979)
chr2 (122-200)||(23403768-23403846)
chr2 (156-198)||(28898149-28898191)
chr2 (156-198)||(42182915-42182957)
chr2 (156-201)||(9470104-9470149)
chr2 (33-109)||(9470073-9470149)
chr2 (149-201)||(17505914-17505966)
chr2 (134-194)||(35714564-35714624)
[»] chr8 (42 HSPs)
chr8 (38-213)||(38695658-38695835)
chr8 (42-199)||(6387564-6387719)
chr8 (125-215)||(39455628-39455718)
chr8 (51-198)||(35689490-35689637)
chr8 (114-211)||(33417755-33417852)
chr8 (122-195)||(45057988-45058061)
chr8 (56-216)||(16441812-16441972)
chr8 (148-215)||(40709767-40709834)
chr8 (50-200)||(13407345-13407495)
chr8 (57-214)||(9953676-9953833)
chr8 (116-201)||(12212145-12212230)
chr8 (116-201)||(12456573-12456658)
chr8 (115-213)||(35494137-35494236)
chr8 (116-200)||(33440577-33440661)
chr8 (41-148)||(7599495-7599602)
chr8 (115-173)||(902421-902479)
chr8 (43-200)||(1205829-1205986)
chr8 (41-111)||(13407321-13407391)
chr8 (122-200)||(34434937-34435015)
chr8 (116-149)||(1311513-1311546)
chr8 (36-109)||(1977285-1977358)
chr8 (156-201)||(32072120-32072165)
chr8 (116-200)||(28700577-28700661)
chr8 (134-178)||(29662284-29662328)
chr8 (116-200)||(30085451-30085535)
chr8 (38-109)||(28413981-28414052)
chr8 (42-109)||(32072098-32072165)
chr8 (92-191)||(35188403-35188502)
chr8 (45-111)||(12212126-12212192)
chr8 (45-111)||(12456554-12456620)
chr8 (158-204)||(17499347-17499393)
chr8 (116-182)||(33133472-33133538)
chr8 (156-194)||(34861299-34861337)
chr8 (156-198)||(35689506-35689548)
chr8 (156-200)||(1977285-1977329)
chr8 (156-201)||(13856507-13856552)
chr8 (116-149)||(31703823-31703856)
chr8 (156-200)||(7599534-7599578)
chr8 (157-201)||(9952870-9952914)
chr8 (122-210)||(14022008-14022096)
chr8 (42-110)||(16983507-16983575)
chr8 (34-109)||(34861299-34861372)
[»] chr3 (43 HSPs)
chr3 (37-136)||(52951372-52951471)
chr3 (43-200)||(27243047-27243204)
chr3 (36-198)||(37600153-37600315)
chr3 (42-200)||(54186928-54187086)
chr3 (41-198)||(10769748-10769905)
chr3 (100-165)||(42926188-42926253)
chr3 (50-198)||(54140916-54141064)
chr3 (115-198)||(24748933-24749016)
chr3 (44-106)||(52951475-52951537)
chr3 (41-109)||(28529253-28529321)
chr3 (116-200)||(42780694-42780778)
chr3 (50-173)||(46237094-46237217)
chr3 (35-109)||(38928000-38928074)
chr3 (42-199)||(13809083-13809239)
chr3 (156-201)||(28529276-28529321)
chr3 (36-201)||(46575943-46576108)
chr3 (159-200)||(52951475-52951516)
chr3 (41-109)||(20493557-20493625)
chr3 (116-200)||(29235671-29235755)
chr3 (71-194)||(357790-357913)
chr3 (50-109)||(24748916-24748975)
chr3 (116-199)||(46893419-46893502)
chr3 (42-200)||(48543142-48543300)
chr3 (156-201)||(26310558-26310603)
chr3 (41-109)||(5452172-5452240)
chr3 (116-200)||(13639426-13639510)
chr3 (122-198)||(38928032-38928108)
chr3 (36-107)||(46160944-46161013)
chr3 (41-109)||(54140890-54140958)
chr3 (156-198)||(41707551-41707593)
chr3 (156-198)||(46237158-46237200)
chr3 (115-213)||(55452024-55452121)
chr3 (50-111)||(20493452-20493513)
chr3 (156-201)||(20493557-20493602)
chr3 (42-111)||(24734817-24734886)
chr3 (42-111)||(41451894-41451963)
chr3 (54-109)||(357875-357928)
chr3 (41-109)||(10769722-10769790)
chr3 (51-103)||(13639412-13639464)
chr3 (41-109)||(37600127-37600195)
chr3 (41-109)||(37776815-37776883)
chr3 (41-109)||(45515607-45515675)
chr3 (158-194)||(46160977-46161013)
[»] chr4 (31 HSPs)
chr4 (70-216)||(16178613-16178758)
chr4 (42-194)||(51475163-51475315)
chr4 (42-200)||(39016664-39016822)
chr4 (41-195)||(47237767-47237921)
chr4 (147-212)||(45524112-45524177)
chr4 (36-107)||(40991703-40991774)
chr4 (39-144)||(22626354-22626459)
chr4 (57-185)||(25719149-25719277)
chr4 (38-109)||(43771123-43771194)
chr4 (42-200)||(31699478-31699636)
chr4 (41-191)||(42862451-42862601)
chr4 (41-198)||(44832463-44832620)
chr4 (42-109)||(8108957-8109024)
chr4 (42-200)||(30111791-30111948)
chr4 (156-201)||(8108979-8109024)
chr4 (116-196)||(43480270-43480350)
chr4 (116-213)||(50251526-50251625)
chr4 (41-109)||(51206158-51206226)
chr4 (158-201)||(40991703-40991746)
chr4 (159-201)||(722180-722222)
chr4 (70-148)||(2088738-2088816)
chr4 (127-209)||(28304028-28304110)
chr4 (158-200)||(40812061-40812103)
chr4 (158-200)||(47237855-47237897)
chr4 (156-198)||(51206158-51206200)
chr4 (126-183)||(13115493-13115550)
chr4 (156-201)||(20454563-20454608)
chr4 (42-111)||(39471269-39471338)
chr4 (156-201)||(50571887-50571932)
chr4 (156-200)||(43771150-43771194)
chr4 (156-200)||(50164419-50164463)
[»] chr1 (38 HSPs)
chr1 (41-197)||(11135739-11135895)
chr1 (44-212)||(4578585-4578752)
chr1 (41-198)||(11430441-11430597)
chr1 (84-173)||(39627439-39627528)
chr1 (36-203)||(41917990-41918159)
chr1 (41-198)||(32848606-32848763)
chr1 (79-201)||(31602082-31602204)
chr1 (122-214)||(11709657-11709749)
chr1 (41-109)||(26980374-26980442)
chr1 (116-214)||(931989-932087)
chr1 (41-107)||(6133738-6133804)
chr1 (42-200)||(29068102-29068260)
chr1 (41-109)||(13388334-13388402)
chr1 (42-198)||(41095632-41095788)
chr1 (41-200)||(14094022-14094181)
chr1 (156-207)||(32211896-32211947)
chr1 (42-200)||(24886061-24886219)
chr1 (70-200)||(50773132-50773262)
chr1 (35-107)||(25543334-25543406)
chr1 (70-198)||(50424889-50425017)
chr1 (38-88)||(3872766-3872816)
chr1 (43-109)||(11135854-11135920)
chr1 (35-109)||(11430556-11430629)
chr1 (116-150)||(14562604-14562638)
chr1 (52-110)||(15661005-15661063)
chr1 (52-102)||(28274797-28274847)
chr1 (163-201)||(28274809-28274847)
chr1 (41-214)||(41958085-41958255)
chr1 (34-88)||(44739111-44739165)
chr1 (96-193)||(24436495-24436592)
chr1 (156-201)||(26980374-26980419)
chr1 (41-106)||(39039470-39039535)
chr1 (41-109)||(9165302-9165370)
chr1 (41-109)||(15523210-15523278)
chr1 (41-109)||(15531204-15531272)
chr1 (160-200)||(32848699-32848739)
chr1 (156-200)||(37553061-37553105)
chr1 (41-109)||(41095606-41095674)
[»] chr6 (18 HSPs)
chr6 (36-198)||(19090238-19090400)
chr6 (122-200)||(32439500-32439578)
chr6 (41-109)||(19737432-19737500)
chr6 (44-194)||(35128750-35128900)
chr6 (50-214)||(31116132-31116295)
chr6 (156-207)||(9940375-9940426)
chr6 (42-109)||(34905337-34905404)
chr6 (156-213)||(4595753-4595810)
chr6 (156-201)||(34905359-34905404)
chr6 (41-109)||(19090212-19090280)
chr6 (156-207)||(12327317-12327368)
chr6 (41-200)||(21987292-21987450)
chr6 (156-198)||(19737547-19737589)
chr6 (156-213)||(373514-373571)
chr6 (156-201)||(445841-445886)
chr6 (41-109)||(6531410-6531478)
chr6 (116-200)||(7447639-7447722)
chr6 (147-199)||(21987317-21987369)
[»] chr5 (27 HSPs)
chr5 (41-197)||(42224615-42224771)
chr5 (116-196)||(32153766-32153846)
chr5 (38-185)||(36595149-36595297)
chr5 (71-194)||(13456192-13456315)
chr5 (36-198)||(4959273-4959435)
chr5 (42-200)||(5990518-5990676)
chr5 (53-213)||(16875271-16875433)
chr5 (41-200)||(40971474-40971633)
chr5 (44-195)||(26072106-26072257)
chr5 (92-194)||(868193-868296)
chr5 (41-111)||(26072216-26072286)
chr5 (122-195)||(32050388-32050461)
chr5 (36-109)||(32050422-32050495)
chr5 (116-200)||(30892131-30892215)
chr5 (52-109)||(1649561-1649618)
chr5 (156-201)||(1649573-1649618)
chr5 (170-207)||(10141991-10142028)
chr5 (156-213)||(25710584-25710641)
chr5 (158-215)||(28434930-28434987)
chr5 (52-109)||(32309491-32309548)
chr5 (156-201)||(32309503-32309548)
chr5 (36-109)||(42224583-42224656)
chr5 (41-109)||(17537214-17537282)
chr5 (41-109)||(17568699-17568767)
chr5 (34-109)||(24915170-24915243)
chr5 (34-109)||(24991001-24991074)
chr5 (116-200)||(41020251-41020335)
[»] scaffold0190 (2 HSPs)
scaffold0190 (65-147)||(2409-2491)
scaffold0190 (155-203)||(2446-2494)
[»] scaffold0147 (1 HSPs)
scaffold0147 (79-199)||(28334-28454)
[»] chr7 (44 HSPs)
chr7 (42-198)||(13919781-13919937)
chr7 (50-198)||(47822005-47822153)
chr7 (36-109)||(19422946-19423019)
chr7 (42-199)||(24539145-24539302)
chr7 (36-198)||(26703463-26703623)
chr7 (41-207)||(17354540-17354707)
chr7 (32-106)||(31502579-31502653)
chr7 (54-186)||(41258177-41258309)
chr7 (38-109)||(14795128-14795199)
chr7 (38-109)||(15242120-15242191)
chr7 (41-167)||(22786151-22786277)
chr7 (42-199)||(17749695-17749852)
chr7 (117-198)||(19840908-19840989)
chr7 (156-201)||(22189962-22190007)
chr7 (41-197)||(45909455-45909612)
chr7 (116-200)||(25980824-25980908)
chr7 (37-109)||(32212981-32213053)
chr7 (53-168)||(48745238-48745353)
chr7 (156-201)||(7775023-7775068)
chr7 (156-201)||(11824094-11824139)
chr7 (156-201)||(19422946-19422991)
chr7 (116-213)||(26459068-26459165)
chr7 (45-106)||(27949277-27949338)
chr7 (156-201)||(44511048-44511093)
chr7 (41-109)||(13919895-13919963)
chr7 (41-109)||(22189939-22190007)
chr7 (35-109)||(32205073-32205144)
chr7 (41-105)||(33008104-33008168)
chr7 (44-111)||(17749807-17749874)
chr7 (44-111)||(24539123-24539190)
chr7 (44-165)||(46067940-46068060)
chr7 (35-85)||(2520726-2520776)
chr7 (41-111)||(27888394-27888464)
chr7 (44-109)||(45909571-45909636)
chr7 (116-196)||(557450-557530)
chr7 (41-109)||(14759758-14759826)
chr7 (52-112)||(25980861-25980921)
chr7 (41-109)||(26703437-26703505)
chr7 (116-152)||(29310495-29310531)
chr7 (156-200)||(32212981-32213025)
chr7 (160-200)||(33008128-33008168)
chr7 (42-82)||(34281064-34281104)
chr7 (92-200)||(43930010-43930116)
chr7 (45-109)||(44511048-44511112)
[»] scaffold0095 (1 HSPs)
scaffold0095 (125-215)||(14022-14112)
[»] scaffold0543 (1 HSPs)
scaffold0543 (147-214)||(9674-9741)
[»] scaffold0492 (1 HSPs)
scaffold0492 (147-214)||(11220-11287)
[»] scaffold0005 (1 HSPs)
scaffold0005 (163-201)||(296859-296897)


Alignment Details
Target: chr2 (Bit Score: 121; Significance: 4e-62; HSPs: 43)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 17 - 226
Target Start/End: Complemental strand, 19427449 - 19427257
Alignment:
Q  17 tagagagataatacgataaaagaagaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactcc 116  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||| |||||||||||| |||||||||||||||||||||||||    
T  19427449 tagagagataatacgataaaagaagaatgctagcaacactctctttttaaca--ctctctagcactcactctatcattggatgaaatcaatgtggactcc 19427352  T
Q  117 accattttatgtgggatccatttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgttgctagcactcctctac 216  Q
    |||| |||||||||||||||||| |||||||||||               ||||||| |||||||||||||||||||||||||||||||||||||| |||    
T  19427351 accactttatgtgggatccattttcaaagtgtggg---------------atccaatgagagagtgagtgctagagagagtgttgctagcactcctatac 19427267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 35 - 195
Target Start/End: Complemental strand, 14715813 - 14715652
Alignment:
Q  35 aaagaagaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgt-gggat 133  Q
    ||||||||| |||| ||||||||||||||||||| |||||  | |||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||    
T  14715813 aaagaagaaggctaacaacactctctttttaacattctctacagcactcactctatcattggatgaaatcaatgaggactccaccattttatgtggggat 14715714  T
Q  134 ccatttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagaga 195  Q
    || ||| ||||||||||||| |||||| |||||||||||| ||||||||| |||||||||||    
T  14715713 ccgttttcaaagtgtgggatccacattaatttcatccaatgagagagtgaatgctagagaga 14715652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 41 - 200
Target Start/End: Original strand, 42182889 - 42183048
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttc 140  Q
    |||||||| |||||||||||||| | || |||||||| |||||||||| | ||||| ||||||||||||     |||||| |||||||||| ||||||||    
T  42182889 gaatgctagcaacactctcttttgagcactctctctagcactcactcttttattgggtgaaatcaatgtatgtcccaccactttatgtgggttccatttc 42182988  T
Q  141 caaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgtt 200  Q
    |||||||| ||    |||||||||||| ||||| | ||||| |||||  |||||||||||    
T  42182989 caaagtgtaggtcctacattgatttcacccaataaaagagttagtgccggagagagtgtt 42183048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 41 - 197
Target Start/End: Complemental strand, 28898217 - 28898061
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttc 140  Q
    |||||||| ||||||||| |||| | || |||||||| |||||||||| | ||||| ||||||||||||     |||||| |||||||||| | ||||||    
T  28898217 gaatgctagcaacactcttttttgagcactctctctagcactcactcttttattgggtgaaatcaatgtatgtcccaccactttatgtgggtttcatttc 28898118  T
Q  141 caaagtgtgggattc-acattgatttcatccaatcagagagtgagtgctagagagagt 197  Q
    ||||||||  ||| | |||||||||||||||||| | ||||||||||||| |||||||    
T  28898117 caaagtgt-agatcctacattgatttcatccaataaaagagtgagtgctaaagagagt 28898061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 34 - 168
Target Start/End: Original strand, 44230850 - 44230982
Alignment:
Q  34 aaaagaagaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggat 133  Q
    ||||||||||||||| ||||||| | |||||| || ||| | ||  ||| ||| ||| ||||||||||||||||||||||||||| | ||||| ||| ||    
T  44230850 aaaagaagaatgctagcaacactatttttttagcactctatttaatacttactttatcattggatgaaatcaatgtggactccacta-tttatatggaat 44230948  T
Q  134 ccatttccaaagtgtgggattcacattgatttcat 168  Q
    ||||||||||| ||| ||| |||||||||||||||    
T  44230949 ccatttccaaaatgtagga-tcacattgatttcat 44230982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 42 - 197
Target Start/End: Complemental strand, 24895444 - 24895291
Alignment:
Q  42 aatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttcc 141  Q
    ||||||| ||||||||||||||  ||| |||||  |  ||||||||| | | ||||| ||||||||||  | |||||||||||||||| | |||||||||    
T  24895444 aatgctagcaacactctcttttggacagtctct--aatactcactcttttaatggataaaatcaatgtatattccaccattttatgtgagttccatttcc 24895347  T
Q  142 aaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagt 197  Q
    |||||||  ||  ||||||||||| | ||||| | |||||||||| ||||||||||    
T  24895346 aaagtgtatgacccacattgatttaacccaatgaaagagtgagtgttagagagagt 24895291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 41 - 213
Target Start/End: Complemental strand, 31395625 - 31395453
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttc 140  Q
    ||||| || |||||||||||||| | || ||||| || |||||||||  | ||||| ||||||||||||     || ||| |||||||||  ||||||||    
T  31395625 gaatgttagcaacactctcttttgagcactctctttagcactcactcctttattgggtgaaatcaatgtatgtccctccactttatgtggattccatttc 31395526  T
Q  141 caaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgttgctagcactcctc 213  Q
    || ||||| ||    ||||| |||||| ||||| | ||| |||||||||||||||||||||||||||||||||    
T  31395525 catagtgtaggtcctacatttatttcacccaataaaagattgagtgctagagagagtgttgctagcactcctc 31395453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 109
Target Start/End: Original strand, 45554564 - 45554635
Alignment:
Q  38 gaagaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    ||||||||||| |||||||| ||||| |||| |||||||| |||||||||| | ||||||||||||||||||    
T  45554564 gaagaatgctagcaacactcacttttcaacactctctctagcactcactcttttattggatgaaatcaatgt 45554635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 198
Target Start/End: Original strand, 15508914 - 15509071
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttc 140  Q
    ||||| || |||||||||||||| |||| ||| |||| |||||||||| | ||||  ||||||||||||     |||||||||| |||||| ||||||||    
T  15508914 gaatgttagcaacactctcttttgaacactctttctaacactcactcttttattgagtgaaatcaatgtatgtcccaccattttttgtgggttccatttc 15509013  T
Q  141 caaagtgtgggattc-acattgatttcatccaatcagagagtgagtgctagagagagtg 198  Q
    ||||||||  ||| | |||||||||||| ||||| | ||||| |||| || ||||||||    
T  15509014 caaagtgt-agatcctacattgatttcacccaattaaagagtaagtgatatagagagtg 15509071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 147
Target Start/End: Complemental strand, 18511389 - 18511283
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttc 140  Q
    |||||||| |||||||| |||||||||| |||| |||||||||||||| | ||||||| ||||||||||     |||| |||||||||||| || ||||     
T  18511389 gaatgctagcaacactcactttttaacactctcactatcactcactcttttattggataaaatcaatgtatgtcccactattttatgtgggttcaatttt 18511290  T
Q  141 caaagtg 147  Q
    |||||||    
T  18511289 caaagtg 18511283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 42 - 213
Target Start/End: Original strand, 5139969 - 5140140
Alignment:
Q  42 aatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttcc 141  Q
    |||||||  |||||||||||| || || |||||||| ||||||||||   ||||| |||||   ||| ||  | ||||| |||||||||||||||||| |    
T  5139969 aatgctaggaacactctctttctagcactctctctaacactcactctcctattgggtgaaactcatgcgggtttcaccactttatgtgggatccattttc 5140068  T
Q  142 aaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgttgctagcactcctc 213  Q
    || |||||| |  |||||  ||||||  |||| ||||||||||||  | ||||||||||  |||||||||||    
T  5140069 aatgtgtggtacccacatgaatttcactcaataagagagtgagtgtcatagagagtgttcatagcactcctc 5140140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 34 - 109
Target Start/End: Complemental strand, 15509104 - 15509029
Alignment:
Q  34 aaaagaagaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    |||||| ||||| || |||||||||||||||| || ||||| ||||||| ||||| ||||||| ||||||||||||    
T  15509104 aaaagaggaatgttagcaacactctctttttagcactctctatatcacttactctttaattgggtgaaatcaatgt 15509029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 146
Target Start/End: Original strand, 1110193 - 1110303
Alignment:
Q  36 aagaagaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatcc 135  Q
    |||| |||||||| |||||||||||||  | || |||||||| |||||||||| | ||||  ||||||||||||     |||||| |||||||||| |||    
T  1110193 aagaggaatgctagcaacactctctttcgagcattctctctaacactcactcttttattgagtgaaatcaatgtatgtcccaccactttatgtgggttcc 1110292  T
Q  136 atttccaaagt 146  Q
    |||||||||||    
T  1110293 atttccaaagt 1110303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 45554635 - 45554590
Alignment:
Q  156 acattgatttcatccaatcagagagtgagtgctagagagagtgttg 201  Q
    |||||||||||||||||| | |||||||||||||||||||||||||    
T  45554635 acattgatttcatccaataaaagagtgagtgctagagagagtgttg 45554590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 197
Target Start/End: Complemental strand, 4964853 - 4964697
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttc 140  Q
    |||||||| ||||| |||||||| |  | |||||||| |||||||| | | ||||| ||||||||||||     |||||| |||||||||  | |||||     
T  4964853 gaatgctagcaacattctcttttgagtactctctctagcactcacttttttattgggtgaaatcaatgtatgtcccaccactttatgtggatttcatttt 4964754  T
Q  141 caaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagt 197  Q
    |||||||| ||    |||||||| | ||||||| | |||||||||||||||||||||    
T  4964753 caaagtgtaggtcctacattgatcttatccaataaaagagtgagtgctagagagagt 4964697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 12989191 - 12989259
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    |||||||| |||||||| ||||| |||| ||||| | ||||||||||| | ||||||||||||||||||    
T  12989191 gaatgctagcaacactcacttttcaacactctctttctcactcactctttcattggatgaaatcaatgt 12989259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 165
Target Start/End: Complemental strand, 21215420 - 21215377
Alignment:
Q  122 tttatgtgggatccatttccaaagtgtgggattcacattgattt 165  Q
    |||||||||||||||||| |||||||||||||||||||| ||||    
T  21215420 tttatgtgggatccattttcaaagtgtgggattcacattaattt 21215377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 194
Target Start/End: Original strand, 21447178 - 21447257
Alignment:
Q  115 ccaccattttatgtgggatccatttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagag 194  Q
    |||||||||||||||||| |||||||||||||||  ||  |||||||||||||  |||| | |||||| ||| |||||||    
T  21447178 ccaccattttatgtgggacccatttccaaagtgtaagacccacattgatttcacacaataaaagagtgggtgttagagag 21447257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 109
Target Start/End: Original strand, 28898031 - 28898102
Alignment:
Q  38 gaagaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    ||||||||||| |||||||||||||| |  | ||||| || |||||||||| | ||||||||||||||||||    
T  28898031 gaagaatgctagcaacactctcttttgagtactctctttagcactcactcttttattggatgaaatcaatgt 28898102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 201
Target Start/End: Original strand, 6980235 - 6980277
Alignment:
Q  159 ttgatttcatccaatcagagagtgagtgctagagagagtgttg 201  Q
    ||||||||||||||| | |||||||||||||||||||||||||    
T  6980235 ttgatttcatccaataaaagagtgagtgctagagagagtgttg 6980277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 198
Target Start/End: Original strand, 37228499 - 37228656
Alignment:
Q  42 aatgctatcaacactctctttttaacaatctctctatcactcactctataattggatg-aaatcaatgtggactccaccattttatgtgggatccatttc 140  Q
    ||||||| |||||||||||||| | || |||||||| |||||||||| | ||||| || |||| |||||     |||||| |||||||||| ||| |||     
T  37228499 aatgctagcaacactctcttttgagcactctctctagcactcactcttttattgggtgaaaattaatgtatgtcccaccactttatgtgggttccgtttt 37228598  T
Q  141 caaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtg 198  Q
    |||||||  ||    |||||||||||| ||||| | | ||||||||||||| ||||||    
T  37228599 caaagtgcaggtcctacattgatttcacccaataaaaaagtgagtgctagaaagagtg 37228656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 37719829 - 37719902
Alignment:
Q  36 aagaagaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    |||| |||||||| ||||| |||||||| | || ||| |||| |||||||||| | ||||||||||||||||||    
T  37719829 aagaggaatgctagcaacattctcttttgagcactctttctagcactcactcttttattggatgaaatcaatgt 37719902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 42579771 - 42579820
Alignment:
Q  158 attgatttcatccaatcagagagtgagtgctagagagagtgttgctagca 207  Q
    |||||||||||||||| | |||||||||| | ||||||||||||||||||    
T  42579771 attgatttcatccaataaaagagtgagtgtttgagagagtgttgctagca 42579820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 224
Target Start/End: Original strand, 42763772 - 42763888
Alignment:
Q  114 tccaccattttatgtgggatccatttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgctaga------gagagtgttgctagca 207  Q
    ||||||| |||||||| || |||||||||||||||| ||  ||||||||||||| | ||| |||||  ||||| ||||      ||||||||| ||||||    
T  42763772 tccaccactttatgtgagacccatttccaaagtgtgagaaccacattgatttcacctaataagagaacgagtgttagagtgaatgagagtgtttctagca 42763871  T
Q  208 ctcctctacgataaaaa 224  Q
    |||||||| | ||||||    
T  42763872 ctcctctatgctaaaaa 42763888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 194
Target Start/End: Original strand, 864179 - 864251
Alignment:
Q  122 tttatgtgggatccatttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagag 194  Q
    ||||||||||||||||||| || |||||| |  |||||  |||||| ||||| |||||||||||| |||||||    
T  864179 tttatgtgggatccatttctaatgtgtggtacccacatgaatttcacccaataagagagtgagtgttagagag 864251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 6980299 - 6980235
Alignment:
Q  42 aatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaa 106  Q
    ||||||| ||||| || ||||| |||| |||||||| |||||||||| | |||||||||||||||    
T  6980299 aatgctagcaacattcacttttcaacactctctctagcactcactcttttattggatgaaatcaa 6980235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 26767941 - 26767873
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    |||||||| |||||||| ||||| |||| |||||||| |||| ||||| | | ||||||||||||||||    
T  26767941 gaatgctagcaacactcacttttcaacattctctctagcacttactcttttactggatgaaatcaatgt 26767873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 196
Target Start/End: Original strand, 38104299 - 38104403
Alignment:
Q  92 attggatgaaatcaatgtggactccaccattttatgtgggatccatttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgctaga 191  Q
    ||||||| ||||||||||    ||||||| ||||| |||| |||||| |||||||||  ||  |||||||| || || |||| |||||||||||| ||||    
T  38104299 attggataaaatcaatgtatgttccaccactttatttgggttccattcccaaagtgtatgacccacattgaattaattcaatgagagagtgagtgttaga 38104398  T
Q  192 gagag 196  Q
    |||||    
T  38104399 gagag 38104403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 44274421 - 44274345
Alignment:
Q  36 aagaagaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtgga 112  Q
    |||| |||||||| |||||||||||||| || | |||||||| |||||||||| | ||||| | |||||| ||||||    
T  44274421 aagaggaatgctaacaacactctcttttaaatattctctctaacactcactctgttattggtttaaatcattgtgga 44274345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 14715627 - 14715694
Alignment:
Q  45 gctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtgga 112  Q
    |||| ||||||| ||||||||| | |||||||| || ||||||| | |||||||||||| ||||||||    
T  14715627 gctagcaacactttctttttaatattctctctagcattcactctctcattggatgaaattaatgtgga 14715694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 194
Target Start/End: Original strand, 19427358 - 19427397
Alignment:
Q  155 cacattgatttcatccaatcagagagtgagtgctagagag 194  Q
    ||||||||||||||||||| | ||||||||||||||||||    
T  19427358 cacattgatttcatccaatgatagagtgagtgctagagag 19427397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 198
Target Start/End: Complemental strand, 37719943 - 37719860
Alignment:
Q  115 ccaccattttatgtgggatccatttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtg 198  Q
    ||||||||||| ||||  |||||||| |||||||  |    |||||||||||||||||| | ||||||||||||||| ||||||    
T  37719943 ccaccattttaagtggattccatttctaaagtgtatgtcctacattgatttcatccaataaaagagtgagtgctagaaagagtg 37719860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 11539423 - 11539489
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaat 107  Q
    |||||||| ||||||||  |||| |||| ||| |||| |||||||||| | ||||||||||||||||    
T  11539423 gaatgctaacaacactcatttttgaacactctttctagcactcactcttttattggatgaaatcaat 11539489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 200
Target Start/End: Complemental strand, 11539489 - 11539447
Alignment:
Q  158 attgatttcatccaatcagagagtgagtgctagagagagtgtt 200  Q
    |||||||||||||||| | ||||||||||||||| ||||||||    
T  11539489 attgatttcatccaataaaagagtgagtgctagaaagagtgtt 11539447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 110
Target Start/End: Original strand, 17188067 - 17188134
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtg 110  Q
    ||||| || |||||||| ||||| |||  ||||||||||||||||| | | |||||||||||||||||||    
T  17188067 gaatgttaccaacactcacttttcaac--tctctctatcactcactattttattggatgaaatcaatgtg 17188134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 149
Target Start/End: Complemental strand, 17505979 - 17505881
Alignment:
Q  51 aacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttccaaagtgtg 149  Q
    |||||| |||||| |||| |||||| | |||||| ||| |||||| ||||||||||||||||  || ||| ||| || |||| | |||||| |||||||    
T  17505979 aacactatcttttcaacactctctcaaacactcattctctaattgaatgaaatcaatgtggatcccgccactttttgggggacctatttccgaagtgtg 17505881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 200
Target Start/End: Original strand, 23403768 - 23403846
Alignment:
Q  122 tttatgtgggatccatttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgtt 200  Q
    ||||| ||||| ||||||||||||||||| |  ||||| ||||||| ||| | |||||||||| | |||| ||||||||    
T  23403768 tttatttgggacccatttccaaagtgtggtacccacatggatttcacccagtaagagagtgagggttagaaagagtgtt 23403846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 28898149 - 28898191
Alignment:
Q  156 acattgatttcatccaatcagagagtgagtgctagagagagtg 198  Q
    |||||||||||| ||||| | ||||||||||||||||||||||    
T  28898149 acattgatttcacccaataaaagagtgagtgctagagagagtg 28898191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Complemental strand, 42182957 - 42182915
Alignment:
Q  156 acattgatttcatccaatcagagagtgagtgctagagagagtg 198  Q
    |||||||||||| ||||| | ||||||||||||||||||||||    
T  42182957 acattgatttcacccaataaaagagtgagtgctagagagagtg 42182915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 9470149 - 9470104
Alignment:
Q  156 acattgatttcatccaatcagagagtgagtgctagagagagtgttg 201  Q
    |||||||||||||||||| | |||||||||| ||||||||| ||||    
T  9470149 acattgatttcatccaataaaagagtgagtgttagagagagcgttg 9470104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 109
Target Start/End: Original strand, 9470073 - 9470149
Alignment:
Q  33 taaaagaagaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    |||||||  ||||||| ||| ||||  |||| |||  |||||||| |||||||||| | ||||||||||||||||||    
T  9470073 taaaagagaaatgctagcaatactcatttttcaacgctctctctaacactcactcttttattggatgaaatcaatgt 9470149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 17505914 - 17505966
Alignment:
Q  149 gggattcacattgatttcatccaatcagagagtgagtgctagagagagtgttg 201  Q
    ||||| |||||||||||||| |||| ||||| |||||| | ||||||||||||    
T  17505914 gggatccacattgatttcattcaattagagaatgagtgtttgagagagtgttg 17505966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 194
Target Start/End: Original strand, 35714564 - 35714624
Alignment:
Q  134 ccatttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagag 194  Q
    ||||||||||||||||| |  ||||| ||||||||||||  |||||||| ||| |||||||    
T  35714564 ccatttccaaagtgtggtacccacatggatttcatccaacaagagagtgggtgttagagag 35714624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 42)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 38 - 213
Target Start/End: Complemental strand, 38695835 - 38695658
Alignment:
Q  38 gaagaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccat 137  Q
    ||||||||||||||||||||||||| ||    ||||| ||  ||||||||||| |||||||||||||||||||||||| | || || ||| |||||||||    
T  38695835 gaagaatgctatcaacactctctttctagtgctctctttaatactcactctatcattggatgaaatcaatgtggactctatcacttcatgcgggatccat 38695736  T
Q  138 ttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtg--ctagagagagtgttgctagcactcctc 213  Q
    ||| ||||| || ||| |||||| |||||||||||| ||||||||||||   || |||||||||||||| ||||||||    
T  38695735 ttctaaagtatgagatccacattaatttcatccaataagagagtgagtgttataaagagagtgttgctaacactcctc 38695658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 42 - 199
Target Start/End: Original strand, 6387564 - 6387719
Alignment:
Q  42 aatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttcc 141  Q
    ||||||| ||||||||||||||  |||  ||||||| |||||||||| | ||||||| ||||||||||     ||||||||||||||||| |||||||||    
T  6387564 aatgctagcaacactctcttttggaca--ctctctaacactcactcttttattggataaaatcaatgtatgtcccaccattttatgtgggttccatttcc 6387661  T
Q  142 aaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgt 199  Q
    ||||| |  ||  ||||||| ||| | ||||| ||||| |||||| ||||||||||||    
T  6387662 aaagtatacgacccacattgttttaacccaataagagaatgagtgttagagagagtgt 6387719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 125 - 215
Target Start/End: Original strand, 39455628 - 39455718
Alignment:
Q  125 atgtgggatccatttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgttgctagcactcctcta 215  Q
    ||||| || ||||||||||| |||||||| ||||||||||| | | ||| |||||||| ||| ||||||||||||| ||||||||||||||    
T  39455628 atgtgagacccatttccaaaatgtgggatccacattgattttacctaataagagagtgggtgttagagagagtgttcctagcactcctcta 39455718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 51 - 198
Target Start/End: Original strand, 35689490 - 35689637
Alignment:
Q  51 aacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttccaaagtgtgg 150  Q
    ||||||||||||| | || |||||||| |||||||| | | ||||||||||||||||||     |||||| |||||||| | ||||||| ||||||||      
T  35689490 aacactctcttttgagcactctctctagcactcacttttttattggatgaaatcaatgtatgtcccaccactttatgtgagttccattttcaaagtgtaa 35689589  T
Q  151 gattcacattgatttcatccaatcagagagtgagtgctagagagagtg 198  Q
    |   ||||||| ||||| ||||| | | ||||||||||||||||||||    
T  35689590 gtcccacattgttttcacccaataaaaaagtgagtgctagagagagtg 35689637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 114 - 211
Target Start/End: Original strand, 33417755 - 33417852
Alignment:
Q  114 tccaccattttatgtgggatccatttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgttgctagcactcc 211  Q
    ||||||| |||||||||| | |||||||||||||| ||    ||||| ||||||  |||| | |||||||||||||||||||||||||||||| ||||    
T  33417755 tccaccactttatgtgggtttcatttccaaagtgtaggtcctacattaatttcactcaataaaagagtgagtgctagagagagtgttgctagcgctcc 33417852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 122 - 195
Target Start/End: Original strand, 45057988 - 45058061
Alignment:
Q  122 tttatgtgggatccatttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagaga 195  Q
    |||||||||||||||||||||||||||| || ||||||   ||||| ||||| |||||||||||| ||||||||    
T  45057988 tttatgtgggatccatttccaaagtgtgagactcacataagtttcaaccaataagagagtgagtgttagagaga 45058061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 216
Target Start/End: Complemental strand, 16441972 - 16441812
Alignment:
Q  56 tctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttccaaagtgtgggattc 155  Q
    |||||||| |||| | ||| || |||||||||| | | ||||||||||||||||||   ||| ||  ||||||||||||||||||| || | ||| |       
T  16441972 tctcttttcaacactatctataacactcactcttttactggatgaaatcaatgtgggtcccatcaccttatgtgggatccatttccgaattttggaacct 16441873  T
Q  156 acattgatttcatccaatcagagagtgagtgctagagagagtgttgctagcactcctctac 216  Q
    |||| |||||||  |||| | |||||||||| ||||||||||||| | |||| ||||||||    
T  16441872 acatagatttcactcaataaaagagtgagtgttagagagagtgttccaagcattcctctac 16441812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 215
Target Start/End: Complemental strand, 40709834 - 40709767
Alignment:
Q  148 tgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgttgctagcactcctcta 215  Q
    |||||| ||||||||||||| ||||| |||||||||||| || ||||||| ||| |||||||||||||    
T  40709834 tgggatccacattgatttcacccaatgagagagtgagtgttaaagagagttttgttagcactcctcta 40709767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 200
Target Start/End: Complemental strand, 13407495 - 13407345
Alignment:
Q  50 caacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttccaaagtgtg 149  Q
    ||||||||| ||||  ||| |||||||| |||| ||| | | ||||||| ||||||||||     ||||||||||| ||||| || |||| ||||||||     
T  13407495 caacactcttttttggacactctctctaacactaacttttttattggataaaatcaatgtatgtcccaccattttaagtgggttctattttcaaagtgta 13407396  T
Q  150 ggattcacattgatttcatccaatcagagagtgagtgctagagagagtgtt 200  Q
     ||  ||||||||||| | ||||| ||||| |||||| |||||||||||||    
T  13407395 tgacccacattgatttaacccaatgagagaatgagtgttagagagagtgtt 13407345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 214
Target Start/End: Complemental strand, 9953833 - 9953676
Alignment:
Q  57 ctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttccaaagtgtgggattca 156  Q
    ||||||| |||| | | |||| |||||||||| | || ||||||||| ||||||    |||||| |||| |||| |  ||||||||||||||| ||||||    
T  9953833 ctcttttaaacattttttctaacactcactctcttatgggatgaaattaatgtgtgtcccaccactttaagtggaactcatttccaaagtgtgagattca 9953734  T
Q  157 cattgatttcatccaatcagagagtgagtgctagagagagtgttgctagcactcctct 214  Q
    | ||||||| | ||||| | | |||||||| | |||| ||||||| ||||||| ||||    
T  9953733 ccttgatttaaaccaataaaaaagtgagtgtttgagatagtgttgttagcactactct 9953676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 201
Target Start/End: Complemental strand, 12212230 - 12212145
Alignment:
Q  116 caccattttatgtgggatccatttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgttg 201  Q
    ||||| ||||||||||| ||||||||||||||| |||  ||||||||||||| ||||  | ||||||| || |||||||| |||||    
T  12212230 caccactttatgtgggacccatttccaaagtgtaggacccacattgatttcacccaagaaaagagtgaatgttagagagaatgttg 12212145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 201
Target Start/End: Complemental strand, 12456658 - 12456573
Alignment:
Q  116 caccattttatgtgggatccatttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgttg 201  Q
    ||||| ||||||||||| ||||||||||||||| |||  ||||||||||||| ||||  | ||||||| || |||||||| |||||    
T  12456658 caccactttatgtgggacccatttccaaagtgtaggacccacattgatttcacccaagaaaagagtgaatgttagagagaatgttg 12456573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 213
Target Start/End: Complemental strand, 35494236 - 35494137
Alignment:
Q  115 ccaccattttatgtgggatccatttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgct--agagagagtgttgctagcactcct 212  Q
    |||||||||||||||||| ||||||| |||||||| || |||||| ||||| |||||||  ||||||||||| |  | ||||||||||| |||| |||||    
T  35494236 ccaccattttatgtgggacccatttc-aaagtgtgagactcacatcgattttatccaataggagagtgagtgttggaaagagagtgttgatagctctcct 35494138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 200
Target Start/End: Original strand, 33440577 - 33440661
Alignment:
Q  116 caccattttatgtgggatccatttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgtt 200  Q
    ||||| |||||||||||||||||||||| |||||| |  |||||   ||||| ||||| ||||||||| || |||||||||||||    
T  33440577 caccactttatgtgggatccatttccaatgtgtggtacccacatgactttcacccaataagagagtgaatgttagagagagtgtt 33440661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 148
Target Start/End: Complemental strand, 7599602 - 7599495
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttc 140  Q
    ||||| || ||||||||| |||| |||| |||||||| |||  ||||| | ||||||||||||||||||  |  ||| || |||||||||| ||| ||||    
T  7599602 gaatgttagcaacactcttttttgaacactctctctagcacctactcttttattggatgaaatcaatgtatatcccagcactttatgtgggttccttttc 7599503  T
Q  141 caaagtgt 148  Q
    ||||||||    
T  7599502 caaagtgt 7599495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 115 - 173
Target Start/End: Complemental strand, 902479 - 902421
Alignment:
Q  115 ccaccattttatgtgggatccatttccaaagtgtgggattcacattgatttcatccaat 173  Q
    |||||| ||||||||||| |||||||||||| || |||| ||||||||||||| |||||    
T  902479 ccaccactttatgtgggacccatttccaaagcgtaggatccacattgatttcacccaat 902421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 200
Target Start/End: Original strand, 1205829 - 1205986
Alignment:
Q  43 atgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtg-gactccaccattttatgtgggatccatttcc 141  Q
    |||||| |||||||||||||| | || ||||| || |||||||||| | ||| | | |||| |||||  | ||| |||| ||||| |||| || ||||||    
T  1205829 atgctagcaacactctcttttgagcactctctttagcactcactcttttattaggtaaaattaatgtatgtctc-accactttatatgggttctatttcc 1205927  T
Q  142 aaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgtt 200  Q
    ||||||| ||  | ||||||||||||  |||| | ||||||||||||| ||||||||||    
T  1205928 aaagtgtaggtcttacattgatttcactcaataaaagagtgagtgctaaagagagtgtt 1205986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 111
Target Start/End: Original strand, 13407321 - 13407391
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtgg 111  Q
    |||||||| |||||||||||||| |||| |||||||| |||||| ||| | ||||| | ||||||||||||    
T  13407321 gaatgctagcaacactctcttttgaacactctctctaacactcattctctcattgggttaaatcaatgtgg 13407391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 122 - 200
Target Start/End: Complemental strand, 34435015 - 34434937
Alignment:
Q  122 tttatgtgggatccatttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgtt 200  Q
    ||||| |||||| ||||||||| |||||||| || ||| | ||||||||||| ||||||||| || |||||| ||||||    
T  34435015 tttatatgggatgcatttccaaggtgtgggactcgcataggtttcatccaataagagagtgaatgttagagaaagtgtt 34434937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 149
Target Start/End: Original strand, 1311513 - 1311546
Alignment:
Q  116 caccattttatgtgggatccatttccaaagtgtg 149  Q
    ||||||||||||||||||||||||||||||||||    
T  1311513 caccattttatgtgggatccatttccaaagtgtg 1311546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 1977358 - 1977285
Alignment:
Q  36 aagaagaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    |||| |||||||| ||| |||| |||||||||| |||||||| ||||||||||    |||||||||||||||||    
T  1977358 aagaggaatgctagcaatactcactttttaacactctctctagcactcactcttctgttggatgaaatcaatgt 1977285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 32072165 - 32072120
Alignment:
Q  156 acattgatttcatccaatcagagagtgagtgctagagagagtgttg 201  Q
    ||||| |||||||||||| | |||||||||||||||||||||||||    
T  32072165 acattcatttcatccaataaaagagtgagtgctagagagagtgttg 32072120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 200
Target Start/End: Complemental strand, 28700661 - 28700577
Alignment:
Q  116 caccattttatgtgggatccatttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgtt 200  Q
    ||||| |||||||||||| |||||||||  ||||| |  |||||  |||| | ||||| |||||||||||| |||||||||||||    
T  28700661 caccactttatgtgggattcatttccaatatgtggtacccacataaatttaacccaataagagagtgagtgttagagagagtgtt 28700577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 29662284 - 29662328
Alignment:
Q  134 ccatttccaaagtgtgggattcacattgatttcatccaatcagag 178  Q
    ||||||||||||| |||||| ||||||||||||||||||| ||||    
T  29662284 ccatttccaaagtttgggatccacattgatttcatccaataagag 29662328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 200
Target Start/End: Original strand, 30085451 - 30085535
Alignment:
Q  116 caccattttatgtgggatccatttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgtt 200  Q
    ||||| ||||||||||||||||||||||  ||||  | ||||||  ||||||  |||| ||||||| |||| |||||||||||||    
T  30085451 caccactttatgtgggatccatttccaacatgtgacactcacatgaatttcactcaataagagagtaagtgttagagagagtgtt 30085535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 109
Target Start/End: Complemental strand, 28414052 - 28413981
Alignment:
Q  38 gaagaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    ||||||||||| |||||||| ||||| |||| |||||||| | |||||| | | ||| ||||||||||||||    
T  28414052 gaagaatgctaacaacactcacttttcaacactctctctagcgctcacttttttattcgatgaaatcaatgt 28413981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 32072098 - 32072165
Alignment:
Q  42 aatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    ||||||| ||||| || ||||| |||| |||||||| |||||||||| | |||||||||||| |||||    
T  32072098 aatgctagcaacattcacttttcaacactctctctagcactcactcttttattggatgaaatgaatgt 32072165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 191
Target Start/End: Original strand, 35188403 - 35188502
Alignment:
Q  92 attggatgaaatcaatgtggactccaccattttatgtgggatccatttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgctaga 191  Q
    ||||| ||||| | |||||||  |||||| |||| |||||| | |||||||||||||| ||  |||||| |||||| || || |||||||||||| ||||    
T  35188403 attgggtgaaagccatgtggatcccaccactttacgtgggacctatttccaaagtgtgagacccacattaatttcaccctataagagagtgagtgttaga 35188502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 111
Target Start/End: Original strand, 12212126 - 12212192
Alignment:
Q  45 gctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtgg 111  Q
    |||| |||||||||||||| |||| |||||||| || ||||||| |  |||| ||||||||||||||    
T  12212126 gctagcaacactctcttttcaacattctctctaacattcactcttttcttgggtgaaatcaatgtgg 12212192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 111
Target Start/End: Original strand, 12456554 - 12456620
Alignment:
Q  45 gctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtgg 111  Q
    |||| |||||||||||||| |||| |||||||| || ||||||| |  |||| ||||||||||||||    
T  12456554 gctagcaacactctcttttcaacattctctctaacattcactcttttcttgggtgaaatcaatgtgg 12456620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 204
Target Start/End: Original strand, 17499347 - 17499393
Alignment:
Q  158 attgatttcatccaatcagagagtgagtgctagagagagtgttgcta 204  Q
    |||||||||||||||| | |||  |||||||||||||||||||||||    
T  17499347 attgatttcatccaataaaagatagagtgctagagagagtgttgcta 17499393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 182
Target Start/End: Complemental strand, 33133538 - 33133472
Alignment:
Q  116 caccattttatgtgggatccatttccaaagtgtgggattcacattgatttcatccaatcagagagtg 182  Q
    ||||| ||||||| ||| ||||||||||||||||| | | ||||  |||||||||||| ||||||||    
T  33133538 caccactttatgtcggacccatttccaaagtgtggtacttacatgaatttcatccaataagagagtg 33133472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 34861299 - 34861337
Alignment:
Q  156 acattgatttcatccaatcagagagtgagtgctagagag 194  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  34861299 acattgatttcatccaataaaagagtgagtgctagagag 34861337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Complemental strand, 35689548 - 35689506
Alignment:
Q  156 acattgatttcatccaatcagagagtgagtgctagagagagtg 198  Q
    |||||||||||||||||| | | ||||||||||||||||||||    
T  35689548 acattgatttcatccaataaaaaagtgagtgctagagagagtg 35689506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 1977285 - 1977329
Alignment:
Q  156 acattgatttcatccaatcaga-gagtgagtgctagagagagtgtt 200  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||    
T  1977285 acattgatttcatccaa-cagaagagtgagtgctagagagagtgtt 1977329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 13856507 - 13856552
Alignment:
Q  156 acattgatttcatccaatcagagagtgagtgctagagagagtgttg 201  Q
    |||||||||||||||||| | |||||| ||| ||||||||||||||    
T  13856507 acattgatttcatccaataaaagagtgggtgttagagagagtgttg 13856552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 149
Target Start/End: Original strand, 31703823 - 31703856
Alignment:
Q  116 caccattttatgtgggatccatttccaaagtgtg 149  Q
    ||||| ||||||||||||||||||||||||||||    
T  31703823 caccactttatgtgggatccatttccaaagtgtg 31703856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 7599534 - 7599578
Alignment:
Q  156 acattgatttcatccaatcagagagtgagtgctagagagagtgtt 200  Q
    |||||||||||||||||| | |||||  |||||||||||||||||    
T  7599534 acattgatttcatccaataaaagagtaggtgctagagagagtgtt 7599578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 9952870 - 9952914
Alignment:
Q  157 cattgatttcatccaatcagagagtgagtgctagagagagtgttg 201  Q
    ||||||||||||||||| | | | |||||||||||||||||||||    
T  9952870 cattgatttcatccaataaaaaaatgagtgctagagagagtgttg 9952914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 210
Target Start/End: Complemental strand, 14022096 - 14022008
Alignment:
Q  122 tttatgtgggatccatttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgttgctagcactc 210  Q
    |||||||||||||| |||||||||| |||||   ||||| |||||| | ||| ||||||||| || | ||| ||||||| ||| |||||    
T  14022096 tttatgtgggatccgtttccaaagtttgggacctacattaatttcaccgaataagagagtgaatgtttgagtgagtgttcctaacactc 14022008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 110
Target Start/End: Complemental strand, 16983575 - 16983507
Alignment:
Q  42 aatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtg 110  Q
    ||||||| |||||||||||||| |||| ||||||||  ||||||||| | ||||| | |||||| ||||    
T  16983575 aatgctagcaacactctcttttgaacactctctctaatactcactctcttattggtttaaatcattgtg 16983507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 109
Target Start/End: Complemental strand, 34861372 - 34861299
Alignment:
Q  34 aaaagaagaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    |||||| |||||||| || | ||| ||||| ||||  ||||||| |||||||||| | ||||||||||||||||||    
T  34861372 aaaagaggaatgctagcacctctcacttttcaaca--ctctctagcactcactcttttattggatgaaatcaatgt 34861299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 43)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 37 - 136
Target Start/End: Original strand, 52951372 - 52951471
Alignment:
Q  37 agaagaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatcca 136  Q
    |||||||||||| ||||||||||||||||||| |||||| |  ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  52951372 agaagaatgctagcaacactctctttttaacactctctcaaatactcactctatcattggatgaaatcaatgtggactccaccactttatgtgggatcca 52951471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 43 - 200
Target Start/End: Original strand, 27243047 - 27243204
Alignment:
Q  43 atgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttcca 142  Q
    |||||| |||||||||||||| |||| |||||||| |||||||||| | ||||||| |||||||||      |||||| |||||||||| ||||||||||    
T  27243047 atgctagcaacactctcttttgaacactctctctaacactcactcttttattggataaaatcaatgcatgtcccaccactttatgtgggttccatttcca 27243146  T
Q  143 aagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgtt 200  Q
    ||||||  ||  ||||||||||| | ||||| |||||||||||  |||| ||||||||    
T  27243147 aagtgtatgacccacattgatttaacccaatgagagagtgagtattagaaagagtgtt 27243204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 36 - 198
Target Start/End: Complemental strand, 37600315 - 37600153
Alignment:
Q  36 aagaagaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatcc 135  Q
    |||| |||||||| |||||||||||||| | || |||||||| ||| |||||| | ||||| ||||||||||||     |||||| |||||||||| |||    
T  37600315 aagaggaatgctaacaacactctcttttgagcactctctctagcacccactcttttattgggtgaaatcaatgtatgtcccaccactttatgtgggttcc 37600216  T
Q  136 atttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtg 198  Q
    ||||| ||||||| ||    ||||||| |||| ||||| | |||||| |||||||||||||||    
T  37600215 atttctaaagtgtaggtcctacattgaattcaaccaataaaagagtgggtgctagagagagtg 37600153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 42 - 200
Target Start/End: Original strand, 54186928 - 54187086
Alignment:
Q  42 aatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttcc 141  Q
    |||||||  |||||||||||| ||||| |||||||| || |||||||   ||||| |||||   ||||| |   |||||||||||||||||||||||||     
T  54186928 aatgctaagaacactctctttctaacactctctctaacattcactctcctattgggtgaaactcatgtgaatctcaccattttatgtgggatccatttct 54187027  T
Q  142 aaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgtt 200  Q
    || |||||| |  |||||  | |||| ||||| |||||||||||| |||||||||||||    
T  54187028 aatgtgtggtacccacatgaacttcacccaataagagagtgagtgttagagagagtgtt 54187086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 41 - 198
Target Start/End: Complemental strand, 10769905 - 10769748
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttc 140  Q
    |||||||| |||||||||||||| | || ||||||||||||  ||||| | ||| | ||||||||||||     |||||| ||||| |||| ||||||||    
T  10769905 gaatgctagcaacactctcttttgagcactctctctatcaccgactcttttatttggtgaaatcaatgtatgtcccaccactttatatgggttccatttc 10769806  T
Q  141 caaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtg 198  Q
     ||||||| ||    |||||||||||||| ||| | ||||| ||||||||||||||||    
T  10769805 taaagtgtaggtcctacattgatttcatcaaataaaagagtaagtgctagagagagtg 10769748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 100 - 165
Target Start/End: Complemental strand, 42926253 - 42926188
Alignment:
Q  100 aaatcaatgtggactccaccattttatgtgggatccatttccaaagtgtgggattcacattgattt 165  Q
    |||||||||||||  ||||||||||||||||||  ||||||||||||||||||| |||||||||||    
T  42926253 aaatcaatgtggatcccaccattttatgtgggactcatttccaaagtgtgggatccacattgattt 42926188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 50 - 198
Target Start/End: Complemental strand, 54141064 - 54140916
Alignment:
Q  50 caacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttccaaagtgtg 149  Q
    ||||||| |||||| | || |||||||| |||||||||  | ||||| ||||||||||||     |||||| |||| ||||| ||||||| ||||||||     
T  54141064 caacactttcttttgagcactctctctagcactcactcatttattgggtgaaatcaatgtatgtcccaccactttacgtgggttccattttcaaagtgta 54140965  T
Q  150 ggattcacattgatttcatccaatcagagagtgagtgctagagagagtg 198  Q
    || |  |||||||||||||||||| |  |||||||||||||||| ||||    
T  54140964 ggttctacattgatttcatccaataaatgagtgagtgctagagaaagtg 54140916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 115 - 198
Target Start/End: Complemental strand, 24749016 - 24748933
Alignment:
Q  115 ccaccattttatgtgggatccatttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtg 198  Q
    ||||||||||||||||| |||||||| ||||||| ||    |||||||||||||||||| | |||||||||| |||||||||||    
T  24749016 ccaccattttatgtgggttccatttctaaagtgtaggtcctacattgatttcatccaataaaagagtgagtgttagagagagtg 24748933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 52951537 - 52951475
Alignment:
Q  44 tgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaa 106  Q
    ||||| ||||||||||||||||||| |||||||| |||||||||| | |||||||||||||||    
T  52951537 tgctagcaacactctctttttaacactctctctagcactcactctctcattggatgaaatcaa 52951475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 28529253 - 28529321
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    |||||||| |||||||| ||||| |||| |||||||| |||||||||| | ||||||||||||||||||    
T  28529253 gaatgctagcaacactcacttttcaacactctctctagcactcactcttttattggatgaaatcaatgt 28529321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 200
Target Start/End: Complemental strand, 42780778 - 42780694
Alignment:
Q  116 caccattttatgtgggatccatttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgtt 200  Q
    ||||| |||||||||||||||||| | ||||||| ||   |||| ||||||||||||| ||||| |||||| |||||||||||||    
T  42780778 caccactttatgtgggatccattttctaagtgtgagacctacatggatttcatccaataagagaatgagtgttagagagagtgtt 42780694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 173
Target Start/End: Complemental strand, 46237217 - 46237094
Alignment:
Q  50 caacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttccaaagtgtg 149  Q
    |||||||||||||| | || |||||||| || ||||||| | ||||||||||||||||||     |||||| |||||||||| |||||||| ||| |||     
T  46237217 caacactctcttttgagcactctctctagcaatcactcttttattggatgaaatcaatgtatgtcccaccactttatgtgggttccatttctaaaatgta 46237118  T
Q  150 ggattcacattgatttcatccaat 173  Q
    ||    ||||||||||||||||||    
T  46237117 ggtcctacattgatttcatccaat 46237094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 38928000 - 38928074
Alignment:
Q  35 aaagaagaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    |||||||||||||| |||||||||||||| | || | |||||| |||||||||| | ||||| ||||||||||||    
T  38928000 aaagaagaatgctagcaacactctcttttgatcactttctctaacactcactcttttattgggtgaaatcaatgt 38928074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 199
Target Start/End: Original strand, 13809083 - 13809239
Alignment:
Q  42 aatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttcc 141  Q
    ||||||| ||||||||||||||  ||| |||||||| |  ||||||| | ||||||| ||||||||||     ||||||||||||||||| |||||||||    
T  13809083 aatgctagcaacactctcttttacacactctctctaact-tcactcttttattggataaaatcaatgtatgtcccaccattttatgtgggttccatttcc 13809181  T
Q  142 aaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgt 199  Q
    ||||| |  ||  ||||||| ||| | ||||| ||||| ||| || |||||| |||||    
T  13809182 aaagtatatgacccacattgttttaacccaataagagaatgaatgttagagaaagtgt 13809239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 28529321 - 28529276
Alignment:
Q  156 acattgatttcatccaatcagagagtgagtgctagagagagtgttg 201  Q
    |||||||||||||||||| | |||||||||||||||||||||||||    
T  28529321 acattgatttcatccaataaaagagtgagtgctagagagagtgttg 28529276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 201
Target Start/End: Original strand, 46575943 - 46576108
Alignment:
Q  36 aagaagaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatcc 135  Q
    |||| |||||||||||||||||||| || |||| |||||| | |||||||||| | ||||| ||||| ||||||     |||||| ||| |||||| |||    
T  46575943 aagaggaatgctatcaacactctctcttcaacactctctcaaacactcactctcttattggctgaaaccaatgtatgtcccaccactttttgtgggttcc 46576042  T
Q  136 atttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgttg 201  Q
    |||| |||| |||  |   ||||||||||| | || || |||||||||||  || |||||||||||    
T  46576043 attttcaaaatgtacgccccacattgatttaaccctattagagagtgagtattaaagagagtgttg 46576108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 52951475 - 52951516
Alignment:
Q  159 ttgatttcatccaatcagagagtgagtgctagagagagtgtt 200  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  52951475 ttgatttcatccaatgagagagtgagtgctagagagagtgtt 52951516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 20493625 - 20493557
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    |||||||| |||||||| ||||| |||| |||||||| |||||||||  | ||||||||||||||||||    
T  20493625 gaatgctagcaacactcacttttcaacactctctctaacactcactcatttattggatgaaatcaatgt 20493557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 200
Target Start/End: Complemental strand, 29235755 - 29235671
Alignment:
Q  116 caccattttatgtgggatccatttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgtt 200  Q
    ||||| ||||||| ||||||||||| || |||||| || | |||  |||||| ||||| |||||||||||| |||||||||||||    
T  29235755 caccactttatgttggatccatttctaatgtgtggtatcctcatgaatttcacccaataagagagtgagtgttagagagagtgtt 29235671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 194
Target Start/End: Original strand, 357790 - 357913
Alignment:
Q  71 ctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttccaaagtgtgggattcacattgatttcatcc 170  Q
    ||||||| |||||||||| | ||||   |||||||||||   |  ||||| |||||||||| |||||||||||||||| | |   |||||||||||||||    
T  357790 ctctctagcactcactcttttattgagggaaatcaatgtatgcctcaccactttatgtgggttccatttccaaagtgtagtacctacattgatttcatcc 357889  T
Q  171 aatcagagagtgagtgctagagag 194  Q
    ||| | | |||||||| |||||||    
T  357890 aataaaaaagtgagtgatagagag 357913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 109
Target Start/End: Original strand, 24748916 - 24748975
Alignment:
Q  50 caacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    |||||||||||||| | || |||||||| |||||||||| | ||||||||||||||||||    
T  24748916 caacactctcttttgagcactctctctaacactcactcttttattggatgaaatcaatgt 24748975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 199
Target Start/End: Original strand, 46893419 - 46893502
Alignment:
Q  116 caccattttatgtgggatccatttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgt 199  Q
    ||||| |||||||||||||||||||||| |||||  |  |||||  |||||||  ||| |||||||||||| ||||||||||||    
T  46893419 caccactttatgtgggatccatttccaatgtgtgttacccacatgaatttcatttaataagagagtgagtgttagagagagtgt 46893502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 200
Target Start/End: Original strand, 48543142 - 48543300
Alignment:
Q  42 aatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttcc 141  Q
    |||||||  |||||||||||| || || || ||||| ||||||||||   ||||||| |||   ||||||    |||||||||||||||| |||||||||    
T  48543142 aatgctaagaacactctctttctagcactcactctaacactcactctcctattggattaaacacatgtgggtctcaccattttatgtggggtccatttcc 48543241  T
Q  142 aaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgtt 200  Q
    || || ||  |  |||||  |||||| ||||| |||||||||||| | |||||||||||    
T  48543242 aatgtatgctacccacatgaatttcacccaataagagagtgagtgttggagagagtgtt 48543300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 26310558 - 26310603
Alignment:
Q  156 acattgatttcatccaatcagagagtgagtgctagagagagtgttg 201  Q
    |||||||||||||||||| | ||||| |||||||||||||||||||    
T  26310558 acattgatttcatccaataaaagagtaagtgctagagagagtgttg 26310603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 5452240 - 5452172
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    |||||||| |||||||| ||||| |||| ||||| || || ||||||| | ||||||||||||||||||    
T  5452240 gaatgctagcaacactcacttttcaacactctctttaacattcactcttttattggatgaaatcaatgt 5452172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 200
Target Start/End: Complemental strand, 13639510 - 13639426
Alignment:
Q  116 caccattttatgtgggatccatttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgtt 200  Q
    ||||| |||||||| ||||||||||||| |||||  |  |||||  |||||||||||| | ||||||| || |||||||||||||    
T  13639510 caccactttatgtgagatccatttccaatgtgtgatacccacatgaatttcatccaataaaagagtgactgttagagagagtgtt 13639426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 38928108 - 38928032
Alignment:
Q  122 tttatgtgggatccatttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtg 198  Q
    ||||| |||| |||||||||||||||| ||  | |||||||||||| ||||| | |||||||||| |||||| ||||    
T  38928108 tttatatgggttccatttccaaagtgtaggtcttacattgatttcacccaataaaagagtgagtgttagagaaagtg 38928032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 46160944 - 46161013
Alignment:
Q  36 aagaagaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaat 107  Q
    |||| |||||||| |||||||| ||||| ||||  ||||||| |||||||||| | ||||||||||||||||    
T  46160944 aagaggaatgctagcaacactcacttttgaaca--ctctctagcactcactcttttattggatgaaatcaat 46161013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 54140890 - 54140958
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    |||||||| |||||||||||||| | || | |||||| |||||||||  | ||||||||||||||||||    
T  54140890 gaatgctagcaacactctcttttgagcactttctctagcactcactcatttattggatgaaatcaatgt 54140958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 41707551 - 41707593
Alignment:
Q  156 acattgatttcatccaatcagagagtgagtgctagagagagtg 198  Q
    |||||||||| ||||||| |||||||||||| |||||||||||    
T  41707551 acattgattttatccaatgagagagtgagtgttagagagagtg 41707593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 46237158 - 46237200
Alignment:
Q  156 acattgatttcatccaatcagagagtgagtgctagagagagtg 198  Q
    |||||||||||||||||| | ||||||| ||||||||||||||    
T  46237158 acattgatttcatccaataaaagagtgattgctagagagagtg 46237200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 213
Target Start/End: Complemental strand, 55452121 - 55452024
Alignment:
Q  115 ccaccattttatgtgggatccatttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgttgctagcactcctc 213  Q
    |||||| ||| |||||| || ||||||||||||| | | ||| | |||||| | ||||| | |||||||||  |||||||||||||||||||| |||||    
T  55452121 ccaccactttgtgtgggttctatttccaaagtgtag-actcataatgatttaaaccaatgaaagagtgagtattagagagagtgttgctagcattcctc 55452024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 20493452 - 20493513
Alignment:
Q  50 caacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtgg 111  Q
    |||||||||||||| |||| ||||||||| ||||||||| | ||||| | |||||| |||||    
T  20493452 caacactctcttttgaacactctctctattactcactctcttattggtttaaatcattgtgg 20493513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 20493557 - 20493602
Alignment:
Q  156 acattgatttcatccaatcagagagtgagtgctagagagagtgttg 201  Q
    |||||||||||||||||| |  ||||||||| ||||||||||||||    
T  20493557 acattgatttcatccaataaatgagtgagtgttagagagagtgttg 20493602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 24734886 - 24734817
Alignment:
Q  42 aatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtgg 111  Q
    ||||||| |||||||||||||| |||| ||||||||  ||||||||| | ||||| | |||||| |||||    
T  24734886 aatgctagcaacactctcttttgaacactctctctaatactcactctcttattggtttaaatcattgtgg 24734817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 41451894 - 41451963
Alignment:
Q  42 aatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtgg 111  Q
    ||||||| |||||||||||||| |||| ||||||||  ||||||||| | ||||| | |||||| |||||    
T  41451894 aatgctagcaacactctcttttgaacactctctctaatactcactctcttattggtttaaatcattgtgg 41451963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 357928 - 357875
Alignment:
Q  54 actctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    |||||||||| ||||  |||||||||||||||| | | ||||||||||||||||||    
T  357928 actctcttttgaaca--ctctctatcactcacttttttattggatgaaatcaatgt 357875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 10769722 - 10769790
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    ||||||||  ||||||||||||| | || |||||||| |||| ||||| | ||| ||||||||||||||    
T  10769722 gaatgctaataacactctcttttgagcactctctctagcacttactcttttatttgatgaaatcaatgt 10769790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 13639412 - 13639464
Alignment:
Q  51 aacactctctttttaacaatctctctatcactcactctataattggatgaaat 103  Q
    |||||||||||| ||||| |||||||| || ||||||| | ||||||||||||    
T  13639412 aacactctctttctaacactctctctaacagtcactcttttattggatgaaat 13639464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 37600127 - 37600195
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    |||||||| |||||||||||||| | || |||||||| ||| |||||| | ||||| |||| |||||||    
T  37600127 gaatgctagcaacactctcttttgagcactctctctagcacccactcttttattggttgaattcaatgt 37600195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 37776883 - 37776815
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    |||||||| |||||||| ||||| |||| | |||| | |||||||||| | ||| ||||||||||||||    
T  37776883 gaatgctagcaacactcacttttcaacactttctccagcactcactcttttattagatgaaatcaatgt 37776815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 45515675 - 45515607
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    ||||| || |||| ||| |||||||||| |||||| | |||||||| | | ||||||||||||||||||    
T  45515675 gaatgttaacaacgctcactttttaacactctctccaacactcactattttattggatgaaatcaatgt 45515607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 194
Target Start/End: Complemental strand, 46161013 - 46160977
Alignment:
Q  158 attgatttcatccaatcagagagtgagtgctagagag 194  Q
    |||||||||||||||| | ||||||||||||||||||    
T  46161013 attgatttcatccaataaaagagtgagtgctagagag 46160977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 70 - 216
Target Start/End: Original strand, 16178613 - 16178758
Alignment:
Q  70 tctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttccaaagtgtgggattcacattgatttcatc 169  Q
    |||||||| |||||||||| || |||  ||||||||||||     |||||| |||||||||| |||||||||||||||| || |  ||||||||||||||    
T  16178613 tctctctagcactcactcttta-ttgagtgaaatcaatgtatgtcccaccactttatgtgggttccatttccaaagtgtaggttctacattgatttcatc 16178711  T
Q  170 caatcagagagtgagtgctagagagagtgttgctagcactcctctac 216  Q
    |||| | |||||||| | |||||||||||||||||||||||||||||    
T  16178712 caataaaagagtgagagttagagagagtgttgctagcactcctctac 16178758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 194
Target Start/End: Original strand, 51475163 - 51475315
Alignment:
Q  42 aatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttcc 141  Q
    |||||||  |||||||||||| || || |||||||| ||||||| || | ||||| ||||| | |||||||   ||||| ||||||||||||||||||||    
T  51475163 aatgctaggaacactctctttctagcactctctctaacactcaccctcttattgggtgaaacccatgtggatctcaccactttatgtgggatccatttcc 51475262  T
Q  142 aaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagag 194  Q
    || |||||| |  ||||| ||||||| ||||| |||||||| ||| |||||||    
T  51475263 aatgtgtggtacccacatggatttcacccaataagagagtgggtgttagagag 51475315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 42 - 200
Target Start/End: Original strand, 39016664 - 39016822
Alignment:
Q  42 aatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttcc 141  Q
    ||||||| ||||| |||||||| |||| ||||| || |||| ||| | | ||||||||||||||||||     ||||||||||| ||||| |||||||||    
T  39016664 aatgctagcaacattctcttttaaacactctctataacacttactattttattggatgaaatcaatgtatgtcccaccattttacgtgggttccatttcc 39016763  T
Q  142 aaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgtt 200  Q
    ||||||| | ||  |||||||||| | | ||| | ||||| ||||||||||||||||||    
T  39016764 aaagtgtagtatctacattgattttacctaataaaagagtaagtgctagagagagtgtt 39016822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 41 - 195
Target Start/End: Complemental strand, 47237921 - 47237767
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttc 140  Q
    ||||||||||||||||||||||| |||| |||||||| || ||||||| | |||||||||||||||| |     |||||| ||||| |  | | |||||     
T  47237921 gaatgctatcaacactctcttttgaacactctctctagcattcactcttttattggatgaaatcaatatatgtcccaccactttatataagtttcatttt 47237822  T
Q  141 caaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagaga 195  Q
    |||||||| || |  ||||  |||||||||||| | |||||||||||||||||||    
T  47237821 caaagtgtaggttctacatgaatttcatccaataaaagagtgagtgctagagaga 47237767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 147 - 212
Target Start/End: Original strand, 45524112 - 45524177
Alignment:
Q  147 gtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgttgctagcactcct 212  Q
    |||||||||| || ||||| ||||||| |||||| |||||||||||||||||||||||||||||||    
T  45524112 gtgggattcatatggattttatccaatgagagagcgagtgctagagagagtgttgctagcactcct 45524177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 107
Target Start/End: Complemental strand, 40991774 - 40991703
Alignment:
Q  36 aagaagaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaat 107  Q
    |||| |||||||| |||||||| ||||| |||| ||||||||||||||||||| | ||||||||||||||||    
T  40991774 aagaggaatgctagcaacactcacttttcaacactctctctatcactcactctttcattggatgaaatcaat 40991703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 144
Target Start/End: Original strand, 22626354 - 22626459
Alignment:
Q  39 aagaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatt 138  Q
    ||||||| |||||||||||||||||||||| ||||| |   |||||||| || |||||||||||| ||| ||||||| |||| ||||| ||  || ||||    
T  22626354 aagaatgatatcaacactctctttttaacactctctttgatactcactccatcattggatgaaattaatatggactctaccactttatatgatattcatt 22626453  T
Q  139 tccaaa 144  Q
    ||||||    
T  22626454 tccaaa 22626459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 185
Target Start/End: Complemental strand, 25719277 - 25719149
Alignment:
Q  57 ctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttccaaagtgtgggattca 156  Q
    |||||||| ||| |||||| | |||||||||| | ||||| ||||||||||||     |||||| |||||||||| | |||||||||| ||| |||  ||    
T  25719277 ctcttttttacactctctcaaacactcactctcttattggttgaaatcaatgtatgtcccaccactttatgtgggtttcatttccaaaatgtaggaccca 25719178  T
Q  157 cattgatttcatccaatcagagagtgagt 185  Q
    || |||||| | |||||||||||||||||    
T  25719177 caatgatttaacccaatcagagagtgagt 25719149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 38 - 109
Target Start/End: Original strand, 43771123 - 43771194
Alignment:
Q  38 gaagaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    |||||||| || |||||||| ||||| |||| ||||||||| ||||||||| | ||||||||||||||||||    
T  43771123 gaagaatggtagcaacactcacttttgaacactctctctatgactcactcttttattggatgaaatcaatgt 43771194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 200
Target Start/End: Original strand, 31699478 - 31699636
Alignment:
Q  42 aatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttcc 141  Q
    |||||||  |||||||||||| || || |||||||| ||||||||||   ||||||| |||   ||||||    |||||||||||||||| |||||||||    
T  31699478 aatgctaagaacactctctttctagcactctctctaacactcactctcctattggattaaacacatgtgggtctcaccattttatgtggggtccatttcc 31699577  T
Q  142 aaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgtt 200  Q
    || || ||  |  |||||  |||||| ||||| |||||||||||| | |||||||||||    
T  31699578 aatgtatgatacccacatgaatttcacccaataagagagtgagtgttggagagagtgtt 31699636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 191
Target Start/End: Complemental strand, 42862601 - 42862451
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttc 140  Q
    ||||||||  ||||||||||||| | || | |||||| |||||||| | | ||||| ||||||||||||     |||||| |||||||||| |||||||     
T  42862601 gaatgctaataacactctcttttgagcactttctctagcactcacttttttattgggtgaaatcaatgtatgtcccaccactttatgtgggttccatttt 42862502  T
Q  141 caaagtgtgggattcacattgatttcatccaatcagagagtgagtgctaga 191  Q
    |||||||||  |   | |||||||||| ||||| | |||||||||||||||    
T  42862501 caaagtgtgaaacataaattgatttcacccaataaaagagtgagtgctaga 42862451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 198
Target Start/End: Original strand, 44832463 - 44832620
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttc 140  Q
    |||||||| ||||| |||||||| | || ||| ||||||||||||| | | ||||| |||||| |||||     ||||||||||||||||  ||||||||    
T  44832463 gaatgctaacaacattctcttttgagcattctttctatcactcacttttttattgggtgaaattaatgtatgtcccaccattttatgtggattccatttc 44832562  T
Q  141 caaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtg 198  Q
    |||||||  ||    |||||||||||| ||||| | | | |||||||| |||||||||    
T  44832563 caaagtgcaggtcctacattgatttcacccaataaaaaaatgagtgctggagagagtg 44832620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 8108957 - 8109024
Alignment:
Q  42 aatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    ||||||| |||||||| ||||| |||| |||||||| |||||||||| | ||||| ||||||||||||    
T  8108957 aatgctagcaacactcacttttcaacactctctctagcactcactcttttattgggtgaaatcaatgt 8109024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 200
Target Start/End: Complemental strand, 30111948 - 30111791
Alignment:
Q  42 aatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttcc 141  Q
    |||| ||| |||| ||||||| ||||| |||||| | ||||||||||   ||||| |||||   |||||||   ||||| ||||||||||||| ||| ||    
T  30111948 aatgatatgaacattctctttctaacattctctcaaacactcactctcatattgggtgaaactcatgtggatctcaccactttatgtgggatcaatt-cc 30111850  T
Q  142 aaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgtt 200  Q
    || |||||| |  |||||   ||||||||||| ||| |||||||| |||||||||||||    
T  30111849 aatgtgtggtacccacatgactttcatccaataagaaagtgagtgttagagagagtgtt 30111791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 8109024 - 8108979
Alignment:
Q  156 acattgatttcatccaatcagagagtgagtgctagagagagtgttg 201  Q
    |||||||||||| ||||| | |||||||||||||||||||||||||    
T  8109024 acattgatttcacccaataaaagagtgagtgctagagagagtgttg 8108979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 196
Target Start/End: Complemental strand, 43480350 - 43480270
Alignment:
Q  116 caccattttatgtgggatccatttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagag 196  Q
    ||||| |||||||||||||||||| ||| |||||| |  |||||  |||||| ||||| ||| |||||||| |||||||||    
T  43480350 caccactttatgtgggatccattttcaatgtgtggtacccacatgaatttcagccaataagaaagtgagtgttagagagag 43480270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 213
Target Start/End: Original strand, 50251526 - 50251625
Alignment:
Q  116 caccattttatgtgggatccatttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgctag--agagagtgttgctagcactcctc 213  Q
    |||||||||| ||||||||||||| ||| |||||| || |||||  |||||| ||||| | | |||||||| |||  ||||||||||  |||||||||||    
T  50251526 caccattttacgtgggatccattttcaacgtgtggtatccacatgaatttcacccaataaaaaagtgagtgttagaaagagagtgttcatagcactcctc 50251625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 51206226 - 51206158
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    |||| ||| |||||||||||||| | || |||||||| |||||||||| | ||||| ||||||||||||    
T  51206226 gaatactagcaacactctcttttgagcactctctctagcactcactcttttattgggtgaaatcaatgt 51206158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 201
Target Start/End: Original strand, 40991703 - 40991746
Alignment:
Q  158 attgatttcatccaatcagagagtgagtgctagagagagtgttg 201  Q
    |||||||||||||||| | |||||||||| ||||||||||||||    
T  40991703 attgatttcatccaatgaaagagtgagtgatagagagagtgttg 40991746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 201
Target Start/End: Complemental strand, 722222 - 722180
Alignment:
Q  159 ttgatttcatccaatcagagagtgagtgctagagagagtgttg 201  Q
    ||||||||||||||| | | |||||||||||||||||||||||    
T  722222 ttgatttcatccaataaaaaagtgagtgctagagagagtgttg 722180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 148
Target Start/End: Complemental strand, 2088816 - 2088738
Alignment:
Q  70 tctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttccaaagtgt 148  Q
    |||||||| |||||||||| ||||||  ||||||||||||     |||||| |||||||||  ||||||||||||||||    
T  2088816 tctctctaacactcactctttaattgagtgaaatcaatgtatgtcccaccactttatgtggattccatttccaaagtgt 2088738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 209
Target Start/End: Complemental strand, 28304110 - 28304028
Alignment:
Q  127 gtgggatccatttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgttgctagcact 209  Q
    ||||| ||||||| ||||||||| ||| ||| ||||||| |  |||| | | |||| ||| ||||||||||||||||||||||    
T  28304110 gtggggtccattttcaaagtgtgtgatccaccttgatttaagtcaataaaaaagtgggtgttagagagagtgttgctagcact 28304028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 200
Target Start/End: Complemental strand, 40812103 - 40812061
Alignment:
Q  158 attgatttcatccaatcagagagtgagtgctagagagagtgtt 200  Q
    |||||||||| ||||| | ||||||||||||||||||||||||    
T  40812103 attgatttcacccaataaaagagtgagtgctagagagagtgtt 40812061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 200
Target Start/End: Original strand, 47237855 - 47237897
Alignment:
Q  158 attgatttcatccaatcagagagtgagtgctagagagagtgtt 200  Q
    |||||||||||||||| | ||||||| ||||||||||||||||    
T  47237855 attgatttcatccaataaaagagtgaatgctagagagagtgtt 47237897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 51206158 - 51206200
Alignment:
Q  156 acattgatttcatccaatcagagagtgagtgctagagagagtg 198  Q
    |||||||||||| ||||| | ||||||||||||||||||||||    
T  51206158 acattgatttcacccaataaaagagtgagtgctagagagagtg 51206200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 183
Target Start/End: Complemental strand, 13115550 - 13115493
Alignment:
Q  126 tgtgggatccatttccaaagtgtgggattcacattgatttcatccaatcagagagtga 183  Q
    ||||||||||||||||||||| || || ||||||| ||||||| |||| | |||||||    
T  13115550 tgtgggatccatttccaaagtatgtgactcacattaatttcattcaataaaagagtga 13115493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 20454608 - 20454563
Alignment:
Q  156 acattgatttcatccaatcagagagtgagtgctagagagagtgttg 201  Q
    |||||||||| ||| ||| | |||||||||||||||||||||||||    
T  20454608 acattgattttatctaataaaagagtgagtgctagagagagtgttg 20454563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 39471338 - 39471269
Alignment:
Q  42 aatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtgg 111  Q
    ||||||| |||||||||||||| |||| ||||||||  ||||||||| | ||||| | |||||| |||||    
T  39471338 aatgctaacaacactctcttttaaacattctctctaatactcactctcttattggtttaaatcattgtgg 39471269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 50571932 - 50571887
Alignment:
Q  156 acattgatttcatccaatcagagagtgagtgctagagagagtgttg 201  Q
    |||||||||||||| ||| | ||||| |||||||||||||||||||    
T  50571932 acattgatttcatctaataaaagagtaagtgctagagagagtgttg 50571887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 43771194 - 43771150
Alignment:
Q  156 acattgatttcatccaatcagagagtgagtgctagagagagtgtt 200  Q
    |||||||||||||||||| | |||||||||  |||||||||||||    
T  43771194 acattgatttcatccaataaaagagtgagtcatagagagagtgtt 43771150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 50164463 - 50164419
Alignment:
Q  156 acattgatttcatccaatcagagagtgagtgctagagagagtgtt 200  Q
    |||||||||| ||||||| |  |||||||||||||||||||||||    
T  50164463 acattgattttatccaataaatgagtgagtgctagagagagtgtt 50164419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 41 - 197
Target Start/End: Original strand, 11135739 - 11135895
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttc 140  Q
    |||||||| |||||||||||||| | || |||||||| |||||||| | | ||||| ||||||||||||     |||||| |||||||||| ||||||||    
T  11135739 gaatgctagcaacactctcttttgagcactctctctagcactcactattttattgggtgaaatcaatgtatgtcccaccactttatgtgggttccatttc 11135838  T
Q  141 caaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagt 197  Q
    |||||||| ||    |||||||||||| ||||| | |||||||||||||||||||||    
T  11135839 caaagtgtaggtcctacattgatttcacccaataaaagagtgagtgctagagagagt 11135895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 44 - 212
Target Start/End: Complemental strand, 4578752 - 4578585
Alignment:
Q  44 tgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatcc-atttcca 142  Q
    ||||| |||||||||||||| ||||  ||||||| |||||||||| | ||||| |||||||||||| |   |||||| |||||| ||| ||| |||||||    
T  4578752 tgctagcaacactctcttttcaaca--ctctctaacactcactcttttattgggtgaaatcaatgtaggtcccaccactttatgcggggtcccatttcca 4578655  T
Q  143 aagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgttgctagcactcct 212  Q
    |||||| |||  ||||||||||||| ||||  |||||| | ||| ||  |||||||||||||||||||||    
T  4578654 aagtgtaggacccacattgatttcacccaaaaagagagcgggtgttacggagagtgttgctagcactcct 4578585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 41 - 198
Target Start/End: Original strand, 11430441 - 11430597
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttc 140  Q
    |||||||| |||||||||||||| | || ||| |||| |||||||||| | ||||| ||||||||||||     |||||| |||||||||| ||||||||    
T  11430441 gaatgctaacaacactctcttttgagcactctttctagcactcactcttttattgggtgaaatcaatgtatgtcccaccactttatgtgggttccatttc 11430540  T
Q  141 caaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtg 198  Q
    |||||||| ||    ||||||| |||| ||||| | ||||||||||||||||||||||    
T  11430541 caaagtgtaggtcctacattgaattca-ccaataaaagagtgagtgctagagagagtg 11430597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 84 - 173
Target Start/End: Complemental strand, 39627528 - 39627439
Alignment:
Q  84 actctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttccaaagtgtgggattcacattgatttcatccaat 173  Q
    ||||||| ||||||||||||||||||||| || |||| ||||||||||||| ||||||||| | || |||||| |||||||| |||||||    
T  39627528 actctatcattggatgaaatcaatgtggattctaccactttatgtgggatctatttccaaaatatgagattcatattgattttatccaat 39627439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 36 - 203
Target Start/End: Original strand, 41917990 - 41918159
Alignment:
Q  36 aagaagaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatcc 135  Q
    ||||||||||||| |||||||||||||| | ||  ||||||| |||||||||| | ||||| ||||||||||||     |||||| |||||||||  |||    
T  41917990 aagaagaatgctagcaacactctcttttgagcaccctctctagcactcactcttttattgggtgaaatcaatgtatgtcccaccactttatgtggattcc 41918089  T
Q  136 atttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgct--agagagagtgttgct 203  Q
    |||| |||||||| ||    |||||||||| | ||||| | ||||||||||||  | |||||||||||||    
T  41918090 attttcaaagtgtaggtcctacattgattttacccaataaaagagtgagtgctcaaaagagagtgttgct 41918159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 41 - 198
Target Start/End: Complemental strand, 32848763 - 32848606
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttc 140  Q
    |||||||| |||||||||||||| |||| |||||||| |||||||||| | ||||| |||||||| |||     |||||| |||||||||  |||||||     
T  32848763 gaatgctaacaacactctcttttgaacactctctctagcactcactcttttattgggtgaaatcattgtatgtcccaccactttatgtggattccatttt 32848664  T
Q  141 caaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtg 198  Q
    |||||||| ||    ||||||| |||| ||||| | ||||| ||||||||||| ||||    
T  32848663 caaagtgtaggtcctacattgaattcaaccaataaaagagtaagtgctagagaaagtg 32848606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 201
Target Start/End: Complemental strand, 31602204 - 31602082
Alignment:
Q  79 cactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttccaaagtgtgggattcacattgatttcatccaatcagag 178  Q
    |||||||||| | |||||||||||   ||||||    ||||| |||| ||||||||||||||||||||||| ||  |||||   ||||||||||| ||||    
T  31602204 cactcactctcttattggatgaaacacatgtgggtctcaccactttaggtgggatccatttccaaagtgtgagacccacatgagtttcatccaataagag 31602105  T
Q  179 agtgagtgctagagagagtgttg 201  Q
    | |||||| ||||||||||||||    
T  31602104 aatgagtgttagagagagtgttg 31602082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 122 - 214
Target Start/End: Original strand, 11709657 - 11709749
Alignment:
Q  122 tttatgtgggatccatttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgttgctagcactcctct 214  Q
    |||||||||||||||||||||| |||||| |  |||||  ||||||  |||| |||||||||||| ||||||||||||   ||||||||||||    
T  11709657 tttatgtgggatccatttccaatgtgtggtacccacatgaatttcactcaataagagagtgagtgttagagagagtgtccatagcactcctct 11709749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 26980442 - 26980374
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    |||||||| |||||||| ||||| |||| ||||||||  ||||||||||| ||||||||||||||||||    
T  26980442 gaatgctaacaacactcacttttcaacactctctctaatactcactctattattggatgaaatcaatgt 26980374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 116 - 214
Target Start/End: Complemental strand, 932087 - 931989
Alignment:
Q  116 caccattttatgtgggatccatttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgttgctagcactcctct 214  Q
    ||||| |||||||||||||||||||||| |||||| || |||||  |||||| ||||| |||||| ||||| || | |||||||   ||||||||||||    
T  932087 caccactttatgtgggatccatttccaatgtgtggtatccacatgaatttcacccaattagagagcgagtgttacaaagagtgtccatagcactcctct 931989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 6133804 - 6133738
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaat 107  Q
    |||||||| |||||||| ||||| ||||||||||||| ||||||| || | ||||||||||||||||    
T  6133804 gaatgctagcaacactcacttttcaacaatctctctagcactcacccttttattggatgaaatcaat 6133738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 200
Target Start/End: Complemental strand, 29068260 - 29068102
Alignment:
Q  42 aatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttcc 141  Q
    |||||||  |||||||||||| || || |||||||| ||||||||||   |||||||||||   ||||||    ||||||||||||||||||| ||||||    
T  29068260 aatgctaggaacactctctttctagcactctctctaacactcactctcctattggatgaaactcatgtgggtctcaccattttatgtgggatcaatttcc 29068161  T
Q  142 aaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgtt 200  Q
    || |||||| |  ||||   |||||| ||||| | | |||||||| |||||| ||||||    
T  29068160 aatgtgtggtacccacacgtatttcacccaataaaatagtgagtgttagagaaagtgtt 29068102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 13388334 - 13388402
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    |||||||| |||||||||||||| || | |||||||| |||||||| | | ||||||||||||||||||    
T  13388334 gaatgctagcaacactctcttttgaatactctctctaacactcacttttttattggatgaaatcaatgt 13388402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 198
Target Start/End: Complemental strand, 41095788 - 41095632
Alignment:
Q  42 aatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttcc 141  Q
    ||||||| |||||||||||||| | || |||||||| |||||||||  | ||||| ||||||||||||     ||| || | | |||||| ||||||| |    
T  41095788 aatgctagcaacactctcttttgagcactctctctagcactcactcatttattgggtgaaatcaatgtatgtcccatcactctgtgtgggttccattttc 41095689  T
Q  142 aaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtg 198  Q
    ||||||| ||    |||||||||||| ||||| |   ||||||||||||||||||||    
T  41095688 aaagtgtaggtcctacattgatttcacccaataaataagtgagtgctagagagagtg 41095632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 200
Target Start/End: Complemental strand, 14094181 - 14094022
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttc 140  Q
    |||||||| | ||| | |||||| |||| |||||| | |||||||| | | ||||| ||||||||||||     |||||| |||||||||| ||||||||    
T  14094181 gaatgctagcgacattatcttttgaacactctctccagcactcacttttttattgggtgaaatcaatgtatgtcccaccactttatgtgggttccatttc 14094082  T
Q  141 caaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgtt 200  Q
    |||||||| ||    ||||||||||||  |||||| | |||||||| || | ||||||||    
T  14094081 caaagtgtaggtcctacattgatttcactcaatcaaaaagtgagtgttacaaagagtgtt 14094022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 207
Target Start/End: Original strand, 32211896 - 32211947
Alignment:
Q  156 acattgatttcatccaatcagagagtgagtgctagagagagtgttgctagca 207  Q
    |||||||||||||| ||| | |||||||||||| ||||||||||||||||||    
T  32211896 acattgatttcatctaataaaagagtgagtgctggagagagtgttgctagca 32211947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 200
Target Start/End: Complemental strand, 24886219 - 24886061
Alignment:
Q  42 aatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttcc 141  Q
    |||||||  |||||||||||| || || |||||||| ||||||||||   ||||| |||||   ||||||    ||||  ||||||||||||| |||| |    
T  24886219 aatgctaagaacactctctttctagcactctctctaacactcactctcctattgggtgaaactcatgtgggtctcaccgctttatgtgggatctatttac 24886120  T
Q  142 aaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgtt 200  Q
    || |||||| |  |||||  |||||| ||||| | |||||||||| |||||||||||||    
T  24886119 aatgtgtggtacccacatgaatttcacccaataaaagagtgagtgttagagagagtgtt 24886061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 200
Target Start/End: Complemental strand, 50773262 - 50773132
Alignment:
Q  70 tctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttccaaagtgtgggattcacattgatttcatc 169  Q
    |||||||| |||||||||| | ||||||| |||||||| |    ||||||| |||||||||| |||||||||||| | | ||    ||||| |||| | |    
T  50773262 tctctctaacactcactcttttattggataaaatcaatatatgttccaccactttatgtgggttccatttccaaaatataggtcctacattaattttacc 50773163  T
Q  170 caatcagagagtgagtgctagagagagtgtt 200  Q
    |||| | ||| ||||||||||||||||||||    
T  50773162 caataaaagaatgagtgctagagagagtgtt 50773132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 25543334 - 25543406
Alignment:
Q  35 aaagaagaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaat 107  Q
    ||||| |||||||| |||||||| ||||| |||| |||||||| |||| ||||| | ||| ||||||||||||    
T  25543334 aaagaggaatgctagcaacactcacttttaaacactctctctaacacttactcttttatttgatgaaatcaat 25543406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 198
Target Start/End: Complemental strand, 50425017 - 50424889
Alignment:
Q  70 tctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttccaaagtgtgggattcacattgatttcatc 169  Q
    |||||||| |||||||||| | ||||||| ||||||||    || |||||| |||||||  | ||||||||||||||||  ||  ||||||||||| | |    
T  50425017 tctctctaacactcactcttttattggataaaatcaatccataccccaccactttatgtaagttccatttccaaagtgtatgacccacattgatttaacc 50424918  T
Q  170 caatcagagagtgagtgctagagagagtg 198  Q
    |||| | | ||||| || |||||||||||    
T  50424917 caataaaaaagtgaatgttagagagagtg 50424889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 3872816 - 3872766
Alignment:
Q  38 gaagaatgctatcaacactctctttttaacaatctctctatcactcactct 88  Q
    ||||||||||| |||||||| ||||| |||| |||||||| ||||||||||    
T  3872816 gaagaatgctagcaacactcacttttcaacactctctctagcactcactct 3872766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 109
Target Start/End: Complemental strand, 11135920 - 11135854
Alignment:
Q  43 atgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    |||||| |||||||||||||| |  | |||||||| |||||||||| | ||||| ||||||||||||    
T  11135920 atgctagcaacactctcttttgaggactctctctagcactcactcttttattgggtgaaatcaatgt 11135854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 109
Target Start/End: Complemental strand, 11430629 - 11430556
Alignment:
Q  35 aaagaagaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    ||||| |||||||| |||||||||||||| | || |||||||| |||||||||| | ||||| |||| |||||||    
T  11430629 aaagaggaatgctagcaacactctcttttgagcactctctctagcactcactcttttattgg-tgaattcaatgt 11430556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 14562604 - 14562638
Alignment:
Q  116 caccattttatgtgggatccatttccaaagtgtgg 150  Q
    ||||| |||||||||||||||||||||||||||||    
T  14562604 caccactttatgtgggatccatttccaaagtgtgg 14562638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 15661063 - 15661005
Alignment:
Q  52 acactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtg 110  Q
    ||||||||||||  ||| |||||||| |||||||||||| ||||| | |||||||||||    
T  15661063 acactctcttttggacactctctctaacactcactctattattgggttaaatcaatgtg 15661005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 28274797 - 28274847
Alignment:
Q  52 acactctctttttaacaatctctctatcactcactctataattggatgaaa 102  Q
    |||||||||||| |||| |||||||| |||||||||| | |||||||||||    
T  28274797 acactctcttttcaacactctctctaacactcactctcttattggatgaaa 28274847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 201
Target Start/End: Complemental strand, 28274847 - 28274809
Alignment:
Q  163 tttcatccaatcagagagtgagtgctagagagagtgttg 201  Q
    ||||||||||| |||||||||||| ||||||||||||||    
T  28274847 tttcatccaataagagagtgagtgttagagagagtgttg 28274809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 214
Target Start/End: Original strand, 41958085 - 41958255
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttc 140  Q
    ||||||||  ||||||| ||||| ||||  ||||| | |||||||||  | ||||||||||||||||||     |||||||||| || ||| || ||||     
T  41958085 gaatgctagtaacactcacttttcaaca--ctctcaagcactcactcatttattggatgaaatcaatgtatgtcccaccattttgtgggggttcaatttt 41958182  T
Q  141 caaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgttgctagcactcctct 214  Q
    |||||||| | |  |||| |||||| | ||||| |||||||||||  |||| ||||||||| ||||| ||||||    
T  41958183 caaagtgtag-acccacagtgatttaaaccaataagagagtgagtattagaaagagtgttgttagcattcctct 41958255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 44739111 - 44739165
Alignment:
Q  34 aaaagaagaatgctatcaacactctctttttaacaatctctctatcactcactct 88  Q
    |||||| ||||| || |||||||||||||| |||| |||||||| ||||||||||    
T  44739111 aaaagaggaatgttagcaacactctcttttgaacactctctctagcactcactct 44739165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 193
Target Start/End: Complemental strand, 24436592 - 24436495
Alignment:
Q  96 gatgaaatcaatgtggactccaccattttatgtgggatccatttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagaga 193  Q
    ||||||||||||||  |  |||||| |||||||||| || |||| |||||||||||    |||||||||||| ||||| | |||| ||||| ||||||    
T  24436592 gatgaaatcaatgtatatcccaccactttatgtgggttctattttcaaagtgtgggtcctacattgatttcacccaataaaagagggagtgttagaga 24436495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 26980374 - 26980419
Alignment:
Q  156 acattgatttcatccaatcagagagtgagtgctagagagagtgttg 201  Q
    |||||||||||||||||| | |||||||||  ||||||||||||||    
T  26980374 acattgatttcatccaataatagagtgagtattagagagagtgttg 26980419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 106
Target Start/End: Complemental strand, 39039535 - 39039470
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaa 106  Q
    |||||||| |||||||| ||||| |||| ||| | || |||||||||| | |||||||||||||||    
T  39039535 gaatgctagcaacactcacttttcaacactctttttagcactcactcttttattggatgaaatcaa 39039470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 9165302 - 9165370
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    |||||||||| |||||||||||| | || ||| |||  |||||||||| | ||||| ||||||||||||    
T  9165302 gaatgctatccacactctcttttgaccactctatcttgcactcactcttttattgggtgaaatcaatgt 9165370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 15523210 - 15523278
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    |||||||||||||| || |||||  ||| ||||| || |||||||| | | ||||||||||||||||||    
T  15523210 gaatgctatcaacattcacttttgcacactctctttagcactcactattttattggatgaaatcaatgt 15523278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 15531204 - 15531272
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    |||||||||||||| || |||||  ||| ||||| || |||||||| | | ||||||||||||||||||    
T  15531204 gaatgctatcaacattcacttttgcacactctctttagcactcactattttattggatgaaatcaatgt 15531272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 32848699 - 32848739
Alignment:
Q  160 tgatttcatccaatcagagagtgagtgctagagagagtgtt 200  Q
    |||||||| ||||| | ||||||||||||||||||||||||    
T  32848699 tgatttcacccaataaaagagtgagtgctagagagagtgtt 32848739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 37553061 - 37553105
Alignment:
Q  156 acattgatttcatccaatcagagagtgagtgctagagagagtgtt 200  Q
    ||||| |||||||||||| ||| ||| ||||||||||||||||||    
T  37553061 acattaatttcatccaataagaaagtaagtgctagagagagtgtt 37553105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 41095606 - 41095674
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    |||||||| |||||||||||||| | || |||||||| ||||||||   | ||||| ||||||||||||    
T  41095606 gaatgctagcaacactctcttttgagcactctctctagcactcacttatttattgggtgaaatcaatgt 41095674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 36 - 198
Target Start/End: Complemental strand, 19090400 - 19090238
Alignment:
Q  36 aagaagaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatcc 135  Q
    |||| |||||||| |||||||||||||| | || |||||||| ||| |||||| | ||||| ||||||||||||     |||||| |||||||||| |||    
T  19090400 aagaggaatgctaacaacactctcttttgagcactctctctagcacccactcttttattgggtgaaatcaatgtatgtcccaccactttatgtgggttcc 19090301  T
Q  136 atttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtg 198  Q
    ||||||||||||| ||    ||||||| |||| ||||| | ||||||||||||||||||||||    
T  19090300 atttccaaagtgtaggtcctacattgaattcaaccaataaaagagtgagtgctagagagagtg 19090238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 122 - 200
Target Start/End: Complemental strand, 32439578 - 32439500
Alignment:
Q  122 tttatgtgggatccatttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgtt 200  Q
    |||||||||||||||||||||| |||||| |  |||||  |||||| ||||| |||||||||||| |||||||||||||    
T  32439578 tttatgtgggatccatttccaatgtgtggtacccacatgaatttcacccaataagagagtgagtgttagagagagtgtt 32439500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 19737432 - 19737500
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    |||||||| |||||||||||||| |||| ||||||||||||||||||| | ||||| | ||||||||||    
T  19737432 gaatgctagcaacactctcttttgaacattctctctatcactcactcttttattggctcaaatcaatgt 19737500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 194
Target Start/End: Complemental strand, 35128900 - 35128750
Alignment:
Q  44 tgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttccaa 143  Q
    ||||| |||||||||||||| |||| |||||||| || ||||||| | ||||| | ||||||||||     |||||| |||||||||| ||||||| |||    
T  35128900 tgctagcaacactctcttttgaacactctctctagcagtcactcttttattgggtaaaatcaatgtatgtcccaccactttatgtgggttccattttcaa 35128801  T
Q  144 agtgtgggattcacattgatttcatccaatcagagagtgagtgctagagag 194  Q
    ||||| ||    |||||||||||| ||||| | | | |||||| |||||||    
T  35128800 agtgtaggtcctacattgatttcacccaataaaaaaatgagtgttagagag 35128750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 214
Target Start/End: Complemental strand, 31116295 - 31116132
Alignment:
Q  50 caacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttccaaagtgtg 149  Q
    |||||||| ||||| |||| |||||||| || |||||||   ||||||||||||||||||     |||| | ||| |||| | || |||||||| ||||     
T  31116295 caacactcacttttgaacactctctctaacattcactcttctattggatgaaatcaatgtatgtcccactactttgtgtgtgttctatttccaatgtgta 31116196  T
Q  150 ggattcacattgatttcatccaatcagagagtgagtgctagagagagtgttgctagcactcctct 214  Q
      |  |||| |||||| | ||||| |||||||||||  |||||||||||||||||||||||||||    
T  31116195 a-acccacaatgatttaaaccaataagagagtgagtattagagagagtgttgctagcactcctct 31116132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 9940426 - 9940375
Alignment:
Q  156 acattgatttcatccaatcagagagtgagtgctagagagagtgttgctagca 207  Q
    |||||||||||| ||||| | ||||||||||||||||||| |||||||||||    
T  9940426 acattgatttcacccaataaaagagtgagtgctagagagaatgttgctagca 9940375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 34905337 - 34905404
Alignment:
Q  42 aatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    ||||||| ||||||||  |||| |||| |||||||| |||||||||| | ||||||||||||||||||    
T  34905337 aatgctagcaacactcatttttcaacactctctctaacactcactcttttattggatgaaatcaatgt 34905404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 4595810 - 4595753
Alignment:
Q  156 acattgatttcatccaatcagagagtgagtgctagagagagtgttgctagcactcctc 213  Q
    ||||||||||||  |||| | |||||||||||||||||||||||| |||||| |||||    
T  4595810 acattgatttcactcaataaaagagtgagtgctagagagagtgtttctagcattcctc 4595753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 34905404 - 34905359
Alignment:
Q  156 acattgatttcatccaatcagagagtgagtgctagagagagtgttg 201  Q
    |||||||||||||||||| | |||||||||| ||||||||||||||    
T  34905404 acattgatttcatccaataaaagagtgagtgttagagagagtgttg 34905359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 19090212 - 19090280
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    |||||||| |||||||||||||| | || |||||||| |||||||||| | ||||| |||| |||||||    
T  19090212 gaatgctagcaacactctcttttgagcactctctctagcactcactcttttattggttgaattcaatgt 19090280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 207
Target Start/End: Original strand, 12327317 - 12327368
Alignment:
Q  156 acattgatttcatccaatcagagagtgagtgctagagagagtgttgctagca 207  Q
    |||||||||  ||||||| | ||||||| |||||||||||||||||||||||    
T  12327317 acattgattctatccaataaaagagtgactgctagagagagtgttgctagca 12327368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 200
Target Start/End: Original strand, 21987292 - 21987450
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttc 140  Q
    |||||||| ||||| || |||||  ||| ||||| || |||||||| | | ||||||||||||||||||  |  |||||| |||||| | | || |||||    
T  21987292 gaatgctaacaacattcacttttgcacactctctttagcactcactattttattggatgaaatcaatgtatatcccaccactttatgcgagttctatttc 21987391  T
Q  141 caaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgtt 200  Q
    ||||||||  ||| | || |||||| | ||||| ||| |||||||  |||||||||||||    
T  21987392 caaagtgt-agatccgcaatgatttaaaccaataagaaagtgagtattagagagagtgtt 21987450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 19737547 - 19737589
Alignment:
Q  156 acattgatttcatccaatcagagagtgagtgctagagagagtg 198  Q
    |||||||||||| ||||| | ||||||||||||||||||||||    
T  19737547 acattgatttcacccaattaaagagtgagtgctagagagagtg 19737589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 213
Target Start/End: Original strand, 373514 - 373571
Alignment:
Q  156 acattgatttcatccaatcagagagtgagtgctagagagagtgttgctagcactcctc 213  Q
    |||||||||| ||||||| | | ||| |||| ||||||||||||||||| ||||||||    
T  373514 acattgattttatccaataaaatagtaagtgttagagagagtgttgctaacactcctc 373571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 445886 - 445841
Alignment:
Q  156 acattgatttcatccaatcagagagtgagtgctagagagagtgttg 201  Q
    |||||||||||||||||| | | ||||||||||||||| |||||||    
T  445886 acattgatttcatccaataaaaaagtgagtgctagagatagtgttg 445841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 6531478 - 6531410
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    |||||||| |||||||||||||| |  | |||||| | |||||||||| | ||||| ||||||||||||    
T  6531478 gaatgctagcaacactctcttttgaggactctctccagcactcactcttttattgggtgaaatcaatgt 6531410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 200
Target Start/End: Original strand, 7447639 - 7447722
Alignment:
Q  116 caccattttatgtgggatccatttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgtt 200  Q
    ||||| ||||||||||||||||||| || |||||| |  |||||  |||||| ||||  ||||||||| || |||||||||||||    
T  7447639 caccactttatgtgggatccatttctaatgtgtggtacccacatgaatttcacccaacaagagagtga-tgttagagagagtgtt 7447722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 199
Target Start/End: Complemental strand, 21987369 - 21987317
Alignment:
Q  147 gtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgt 199  Q
    |||||||  |||||||||||||||||| | | ||||||||||| |||||||||    
T  21987369 gtgggatatacattgatttcatccaataaaatagtgagtgctaaagagagtgt 21987317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 41 - 197
Target Start/End: Complemental strand, 42224771 - 42224615
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttc 140  Q
    |||||||| |||||||||||||| | || |||||||| |||||||||| | ||| | ||||||||||||     |||||| |||||||||| ||||||||    
T  42224771 gaatgctagcaacactctcttttgagcactctctctagcactcactcttttattaggtgaaatcaatgtatgtcccaccactttatgtgggttccatttc 42224672  T
Q  141 caaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagt 197  Q
    |||||||| ||    |||||||||||| ||||| | |||||||||||| ||||||||    
T  42224671 caaagtgtaggtcctacattgatttcacccaataaaagagtgagtgctggagagagt 42224615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 196
Target Start/End: Original strand, 32153766 - 32153846
Alignment:
Q  116 caccattttatgtgggatccatttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagag 196  Q
    ||||| |||||||||||||||||||||||||||||||| ||||| | ||||| ||||| |||||||||||| |||| ||||    
T  32153766 caccactttatgtgggatccatttccaaagtgtgggatccacatgggtttcacccaataagagagtgagtgttagaaagag 32153846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 185
Target Start/End: Complemental strand, 36595297 - 36595149
Alignment:
Q  38 gaagaatgctatcaacactctcttt-ttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatcca 136  Q
    ||||||||||| ||||||||| ||| |||||| | ||| ||  ||| | ||||||||| |||||||||||| ||||||| || | | |||||| |||| |    
T  36595297 gaagaatgctaacaacactctttttcttaacattttctttaatacttattctataattagatgaaatcaatatggactctactactctatgtgagatcaa 36595198  T
Q  137 tttccaaagtgtgggattcacattgatttcatccaatcagagagtgagt 185  Q
    |||| ||||| || ||||||||||||||| ||||||| |||| ||||||    
T  36595197 tttctaaagtatgagattcacattgattttatccaatgagagggtgagt 36595149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 71 - 194
Target Start/End: Complemental strand, 13456315 - 13456192
Alignment:
Q  71 ctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttccaaagtgtgggattcacattgatttcatcc 170  Q
    |||||||| ||||||||| | || |||||||||||||||     ||||||||||||||||| ||||||| |||||||| |||   |||||||||||| |     
T  13456315 ctctctattactcactcttttatcggatgaaatcaatgtatttcccaccattttatgtgggttccattttcaaagtgtaggacctacattgatttcacct 13456216  T
Q  171 aatcagagagtgagtgctagagag 194  Q
    ||| | ||||||||||||||||||    
T  13456215 aataaaagagtgagtgctagagag 13456192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 198
Target Start/End: Original strand, 4959273 - 4959435
Alignment:
Q  36 aagaagaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtg-gactccaccattttatgtgggatc 134  Q
    |||| |||||||| |||||||||||||| | || ||||||||  || |||||| | ||||| ||||||||||||  | ||| | ||||||||||||| |     
T  4959273 aagaggaatgctagcaacactctcttttgagcactctctctaatacccactcttttattgggtgaaatcaatgtatgtctc-atcattttatgtgggtta 4959371  T
Q  135 catttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtg 198  Q
    ||||| |||||||| ||    |||||||||||  ||||| | ||||||||||||||||||||||    
T  4959372 cattttcaaagtgtaggtgatacattgatttcccccaataaaagagtgagtgctagagagagtg 4959435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 200
Target Start/End: Original strand, 5990518 - 5990676
Alignment:
Q  42 aatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttcc 141  Q
    |||||||  ||| ||||||||||| || |||||||| ||||||||||   ||||||| ||||  ||||||    ||||||||||||||||||||||||||    
T  5990518 aatgctaagaacgctctctttttagcactctctctaacactcactctcatattggattaaatacatgtgggtctcaccattttatgtgggatccatttcc 5990617  T
Q  142 aaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgtt 200  Q
    || || ||| |  |||||  |||||| ||||| | |||||||||| | |||| ||||||    
T  5990618 aatgtatggtacccacatgaatttcacccaataaaagagtgagtgttggagaaagtgtt 5990676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 53 - 213
Target Start/End: Complemental strand, 16875433 - 16875271
Alignment:
Q  53 cactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttccaaagtgtggga 152  Q
    |||| ||||| ||||| | |||||| |||||||||| | ||||| | ||||||||||||  ||  ||||||||||||||| |||  ||||||| ||||||    
T  16875433 cactatctttctaacactttctctaacactcactctcttattgggtaaaatcaatgtgggttcacccattttatgtgggacccacgtccaaagagtggga 16875334  T
Q  153 ttcacattgatttcatccaatcagagagtgagtgct--agagagagtgttgctagcactcctc 213  Q
      | |||| |||| | ||||| ||||  ||||||||  | |||||||||| ||||||||||||    
T  16875333 cccgcattaattttacccaataagaggttgagtgctggaaagagagtgttcctagcactcctc 16875271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 41 - 200
Target Start/End: Complemental strand, 40971633 - 40971474
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttc 140  Q
    |||||||| |||||||||||||| | || |||||||| |||||||||| | ||||  ||||||||||||     |||||| |||||||  | | ||||||    
T  40971633 gaatgctaacaacactctcttttgagcactctctctagcactcactcttttattgagtgaaatcaatgtatgtcccaccactttatgtaagtttcatttc 40971534  T
Q  141 caaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgtt 200  Q
    |||||||| ||  | |||||||||| | ||||| | | |||||||| |||| ||||||||    
T  40971533 caaagtgtaggtcttacattgattttacccaataaaatagtgagtgttagatagagtgtt 40971474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 195
Target Start/End: Original strand, 26072106 - 26072257
Alignment:
Q  44 tgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtg-gactccaccattttatgtgggatccatttcca 142  Q
    ||||| |||||||||||||| | || ||| ||||  ||||| ||| |  |||| ||||||||||||  | ||| |||| ||||||||| || ||||||||    
T  26072106 tgctaacaacactctcttttgagcactctttctaatactcattctttttttgggtgaaatcaatgtatgtctc-accactttatgtggaattcatttcca 26072204  T
Q  143 aagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagaga 195  Q
    |||||| ||   ||||||| ||||| ||||| | |||||||||||||||||||    
T  26072205 aagtgtaggtcccacattgttttcacccaataaaagagtgagtgctagagaga 26072257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 194
Target Start/End: Complemental strand, 868296 - 868193
Alignment:
Q  92 attggatgaaatcaatgtggactccaccattttatgtgggatccatttccaaagtgtgggattcacattgatttcatccaatcagagagt-gagtgctag 190  Q
    |||||| ||||||||||||||   ||||| |||||||||||| |||||| ||| ||| |||| |||||| ||||||||| || | ||||| ||||| |||    
T  868296 attggaggaaatcaatgtggatgtcaccactttatgtgggattcatttctaaattgtaggatccacattaatttcatcccataaaagagtggagtgttag 868197  T
Q  191 agag 194  Q
    ||||    
T  868196 agag 868193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 111
Target Start/End: Complemental strand, 26072286 - 26072216
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtgg 111  Q
    |||||||| |||||||||||||| | || |||||||| |||||||||| | ||||| ||||| ||||||||    
T  26072286 gaatgctagcaacactctcttttgagcattctctctagcactcactcttttattgggtgaaaacaatgtgg 26072216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 195
Target Start/End: Original strand, 32050388 - 32050461
Alignment:
Q  122 tttatgtgggatccatttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagaga 195  Q
    |||||||||| ||||||| |||||||||| |   |||||||||||| ||||| | | |||||||||||||||||    
T  32050388 tttatgtgggttccattttcaaagtgtggaacatacattgatttcacccaataaaaaagtgagtgctagagaga 32050461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 32050495 - 32050422
Alignment:
Q  36 aagaagaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    |||| |||||||| |||||||||||||| | || |||||||| |||||||| | | ||||| ||||||||||||    
T  32050495 aagatgaatgctagcaacactctcttttgagcattctctctagcactcacttttttattgggtgaaatcaatgt 32050422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 200
Target Start/End: Complemental strand, 30892215 - 30892131
Alignment:
Q  116 caccattttatgtgggatccatttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgtt 200  Q
    ||||||||||||||||||||||||| || |||||| |  |||||  | |||| | ||| |||||||||||| |||| ||||||||    
T  30892215 caccattttatgtgggatccatttctaatgtgtggtacccacatgaacttcaccgaataagagagtgagtgttagaaagagtgtt 30892131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 1649561 - 1649618
Alignment:
Q  52 acactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    |||||||||||| |||| |||||||| |||||||| | | |||||||||||| |||||    
T  1649561 acactctcttttcaacactctctctaacactcactatcttattggatgaaattaatgt 1649618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 1649618 - 1649573
Alignment:
Q  156 acattgatttcatccaatcagagagtgagtgctagagagagtgttg 201  Q
    ||||| |||||||||||| ||| |||||||| ||||||||||||||    
T  1649618 acattaatttcatccaataagatagtgagtgttagagagagtgttg 1649573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 207
Target Start/End: Complemental strand, 10142028 - 10141991
Alignment:
Q  170 caatcagagagtgagtgctagagagagtgttgctagca 207  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  10142028 caataagagagtgagtgttagagagagtgttgctagca 10141991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 213
Target Start/End: Original strand, 25710584 - 25710641
Alignment:
Q  156 acattgatttcatccaatcagagagtgagtgctagagagagtgttgctagcactcctc 213  Q
    ||||||||||||  |||| | |||||||||| || ||||||||||||||||| |||||    
T  25710584 acattgatttcacacaataaaagagtgagtgataaagagagtgttgctagcattcctc 25710641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 215
Target Start/End: Original strand, 28434930 - 28434987
Alignment:
Q  158 attgatttcatccaatcagagagtgagtgctagagagagtgttgctagcactcctcta 215  Q
    |||||||| ||||||| | ||| | |||| |||||||||||||||||||| |||||||    
T  28434930 attgattttatccaataaaagaattagtgttagagagagtgttgctagcattcctcta 28434987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 32309491 - 32309548
Alignment:
Q  52 acactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    |||||||||||| |||| |||||||| |||||||||| | ||||||| |||| |||||    
T  32309491 acactctcttttcaacattctctctagcactcactctcttattggataaaattaatgt 32309548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 32309548 - 32309503
Alignment:
Q  156 acattgatttcatccaatcagagagtgagtgctagagagagtgttg 201  Q
    ||||| |||| ||||||| ||||||||||||||||||||| |||||    
T  32309548 acattaattttatccaataagagagtgagtgctagagagaatgttg 32309503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 42224583 - 42224656
Alignment:
Q  36 aagaagaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    |||| |||||||| |||||||||||||| |  | |||||| | |||||||||| | ||||| ||||||||||||    
T  42224583 aagaggaatgctagcaacactctcttttgagaactctctccagcactcactcttttattgggtgaaatcaatgt 42224656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 17537282 - 17537214
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    ||||| || ||| |||| ||||| |||| ||||||||||||||||||| | ||| ||| ||||||||||    
T  17537282 gaatgataacaatactcacttttcaacactctctctatcactcactcttttatttgatcaaatcaatgt 17537214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 17568699 - 17568767
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    |||||||| |||||||||||||| | || |||| ||| ||| |||||| | |||||||||||| |||||    
T  17568699 gaatgctagcaacactctcttttgagcactctccctagcacccactcttttattggatgaaattaatgt 17568767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 109
Target Start/End: Complemental strand, 24915243 - 24915170
Alignment:
Q  34 aaaagaagaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    |||||| |||| ||| |||||||||||||| | ||  ||||||| |||||||||| | ||||| ||||||||||||    
T  24915243 aaaagaggaatactagcaacactctcttttaagca--ctctctagcactcactcttttattgggtgaaatcaatgt 24915170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 109
Target Start/End: Complemental strand, 24991074 - 24991001
Alignment:
Q  34 aaaagaagaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    |||||| |||| ||| |||||||||||||| | ||  ||||||| |||||||||| | ||||| ||||||||||||    
T  24991074 aaaagaggaatactagcaacactctcttttaagca--ctctctagcactcactcttttattgggtgaaatcaatgt 24991001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 200
Target Start/End: Original strand, 41020251 - 41020335
Alignment:
Q  116 caccattttatgtgggatccatttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgtt 200  Q
    ||||| |||||||||||| |||||||||  ||||| |  |||||  |||||| ||||| |||||||| ||| ||||||| |||||    
T  41020251 caccactttatgtgggattcatttccaatatgtggtacccacatatatttcacccaataagagagtgggtgttagagagtgtgtt 41020335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 147
Target Start/End: Complemental strand, 2491 - 2409
Alignment:
Q  65 aacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttccaaagtg 147  Q
    |||| ||||||||  ||||||||||| |||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  2491 aacattctctctagtactcactctattattggaggaaatcaatgtggactacaccactttatgtgggatccatttccaaagtg 2409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 2446 - 2494
Alignment:
Q  155 cacattgatttcatccaatcagagagtgagtgctagagagagtgttgct 203  Q
    |||||||||||| |||||| | ||||||||| ||||||||| |||||||    
T  2446 cacattgatttcctccaataatagagtgagtactagagagaatgttgct 2494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 79 - 199
Target Start/End: Original strand, 28334 - 28454
Alignment:
Q  79 cactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttccaaagtgtgggattcacattgatttcatccaatcagag 178  Q
    |||||||| | | ||||||||||||||||||||   ||| || ||||||||||| |||||| ||||||||||||  ||||||||||||| ||||| ||||    
T  28334 cactcactttcttattggatgaaatcaatgtgggtcccatcaatttatgtgggacccattttcaaagtgtgggacccacattgatttcacccaataagag 28433  T
Q  179 agtgagtgctagagagagtgt 199  Q
    |||| ||| | || |||||||    
T  28434 agtgggtgttggaaagagtgt 28454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 44)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 42 - 198
Target Start/End: Original strand, 13919781 - 13919937
Alignment:
Q  42 aatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttcc 141  Q
    ||||||| |||||||||||||| | || |||||||| ||||| |||  | ||||| ||||||||||||     |||||| |||||||||| ||||||| |    
T  13919781 aatgctagcaacactctcttttgagcactctctctagcactcgctcatttattgggtgaaatcaatgtatgtcccaccactttatgtgggttccattttc 13919880  T
Q  142 aaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtg 198  Q
    ||||||| ||    |||||||||||| ||||| |  |||||||||||||||||||||    
T  13919881 aaagtgtaggtcctacattgatttcacccaataaatgagtgagtgctagagagagtg 13919937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 50 - 198
Target Start/End: Complemental strand, 47822153 - 47822005
Alignment:
Q  50 caacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttccaaagtgtg 149  Q
    |||||||||||||  | || |||||||| ||||||||||   ||||| ||||| | |||||||   ||||| |||||||||||||||||||||| |||||    
T  47822153 caacactctctttcaagcactctctctaacactcactcttctattgggtgaaacccatgtggatctcaccactttatgtgggatccatttccaatgtgtg 47822054  T
Q  150 ggattcacattgatttcatccaatcagagagtgagtgctagagagagtg 198  Q
    | |  ||||| ||||||| |||||   |||||||||| |||||||||||    
T  47822053 gtacccacatggatttcacccaatataagagtgagtgttagagagagtg 47822005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 19423019 - 19422946
Alignment:
Q  36 aagaagaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    |||||||||| || |||||||| ||||| |||| ||||||||||||||||||| | ||||||||||||||||||    
T  19423019 aagaagaatgttagcaacactcacttttcaacactctctctatcactcactctttcattggatgaaatcaatgt 19422946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 199
Target Start/End: Complemental strand, 24539302 - 24539145
Alignment:
Q  42 aatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttcc 141  Q
    ||||||| | ||||||||||||  ||| |||||||| |||||||||| | ||||||| |||||||| |     |||||| ||||| |||  |||||||||    
T  24539302 aatgctagcgacactctcttttggacactctctctaacactcactcttttattggataaaatcaatatatgtcccaccactttatatggattccatttcc 24539203  T
Q  142 aaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgt 199  Q
    ||| |||  ||  ||||||||||| | ||||| |||||||||||| ||||||||||||    
T  24539202 aaaatgtatgacccacattgatttaacccaatgagagagtgagtgttagagagagtgt 24539145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 36 - 198
Target Start/End: Complemental strand, 26703623 - 26703463
Alignment:
Q  36 aagaagaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtg-gactccaccattttatgtgggatc 134  Q
    |||| |||||||| |||||||||  ||| | || |||||||| |||||||||| | ||||| ||||||||||||  | ||| |||| |||||||||| ||    
T  26703623 aagaggaatgctagcaacactct--tttgagcattctctctagcactcactcttttattgggtgaaatcaatgtatgtctc-accactttatgtgggttc 26703527  T
Q  135 catttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtg 198  Q
    |||||| ||||||| ||    ||||| |||||| ||||| | ||||||||||||||||||||||    
T  26703526 catttctaaagtgtaggtcctacatttatttcacccaataaaagagtgagtgctagagagagtg 26703463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 41 - 207
Target Start/End: Complemental strand, 17354707 - 17354540
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttc 140  Q
    |||||||| ||||||||| |||| | || |||||||| |||||| ||| | ||||||||||||||||||     |||||| |||||||||| || |||||    
T  17354707 gaatgctagcaacactcttttttgagcactctctctaacactcattcttttattggatgaaatcaatgtatgtcccaccactttatgtgggttctatttc 17354608  T
Q  141 caaagtgtgggattcacattgatttcatccaatcagagagtgagtg-ctagagagagtgttgctagca 207  Q
    |||||||| ||    |||||||||| | ||||| | | |||||||| | | |||||||||||||||||    
T  17354607 caaagtgtaggtcctacattgattttacccaataaaaaagtgagtgccaaaagagagtgttgctagca 17354540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 106
Target Start/End: Complemental strand, 31502653 - 31502579
Alignment:
Q  32 ataaaagaagaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaa 106  Q
    |||||||| |||||||| |||||||| ||||| |||| |||||||| |||||||||| | |||||||||||||||    
T  31502653 ataaaagaggaatgctagcaacactcacttttcaacagtctctctaacactcactcttttattggatgaaatcaa 31502579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 186
Target Start/End: Original strand, 41258177 - 41258309
Alignment:
Q  54 actctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttccaaagtgtgggat 153  Q
    |||||||||| |||| |||||||| || |||| || |  ||||||||||||||||| || | ||  | ||||| |||||||||||  |||||| ||||||    
T  41258177 actctcttttcaacactctctctaacagtcaccctctcgttggatgaaatcaatgtagatttcataactttatttgggatccattcacaaagtttgggat 41258276  T
Q  154 tcacattgatttcatccaatcagagagtgagtg 186  Q
     |||||| |||||||| ||| | ||||||||||    
T  41258277 ccacattaatttcatcaaatgaaagagtgagtg 41258309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 38 - 109
Target Start/End: Original strand, 14795128 - 14795199
Alignment:
Q  38 gaagaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    ||||||||||| |||||||| ||||| |||| ||||||||||| ||||| | | ||||||||||||||||||    
T  14795128 gaagaatgctagcaacactcacttttcaacactctctctatcagtcacttttttattggatgaaatcaatgt 14795199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 38 - 109
Target Start/End: Original strand, 15242120 - 15242191
Alignment:
Q  38 gaagaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    ||||||||||| |||||||| ||||| |||| ||||||||||| ||||| | | ||||||||||||||||||    
T  15242120 gaagaatgctagcaacactcacttttcaacactctctctatcagtcacttttttattggatgaaatcaatgt 15242191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 41 - 167
Target Start/End: Original strand, 22786151 - 22786277
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt-ggactccaccattttatgtgggatccattt 139  Q
    |||||||| |||||||||||||| | || |||||||| |||||||| | | ||| | ||||||||||||  | || ||||| |||||||||| |||||||    
T  22786151 gaatgctagcaacactctcttttgagcactctctctagcactcacttttttattaggtgaaatcaatgtatgtct-caccactttatgtgggttccattt 22786249  T
Q  140 ccaaagtgtgggattcacattgatttca 167  Q
    ||||||||| || |  ||||||||||||    
T  22786250 ccaaagtgtaggttatacattgatttca 22786277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 199
Target Start/End: Original strand, 17749695 - 17749852
Alignment:
Q  42 aatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttcc 141  Q
    ||||||| | ||||||| ||||  ||| |||||||| |||||||||| | ||||||| |||||||| |     |||||| ||||| |||  | |||||||    
T  17749695 aatgctagcgacactcttttttggacactctctctaacactcactcttttattggataaaatcaatatatgtcccaccactttatatggatttcatttcc 17749794  T
Q  142 aaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgt 199  Q
    ||| |||  ||  ||||||||||| | ||||| |||||||||||| ||||||||||||    
T  17749795 aaaatgtatgacccacattgatttaacccaatgagagagtgagtgttagagagagtgt 17749852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 198
Target Start/End: Complemental strand, 19840989 - 19840908
Alignment:
Q  117 accattttatgtgggatccatttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtg 198  Q
    |||| |||||||||| |||||||||||||||| ||    | |||||||||| ||||| | ||||||||||||||||||||||    
T  19840989 accactttatgtgggttccatttccaaagtgtaggtcctatattgatttcacccaataaaagagtgagtgctagagagagtg 19840908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 22190007 - 22189962
Alignment:
Q  156 acattgatttcatccaatcagagagtgagtgctagagagagtgttg 201  Q
    |||||||||||||||||| | |||||||||||||||||||||||||    
T  22190007 acattgatttcatccaataaaagagtgagtgctagagagagtgttg 22189962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 197
Target Start/End: Original strand, 45909455 - 45909612
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctata-attggatgaaatcaatgtggactccaccattttatgtgggatccattt 139  Q
    |||||||||||||||| |||||| | || |||| ||| || ||||||| |  ||||| ||||||||||||     |||||| |||||||||| |||||||    
T  45909455 gaatgctatcaacactatcttttgagcactctccctagcattcactctttttattgggtgaaatcaatgtatgtcccaccactttatgtgggttccattt 45909554  T
Q  140 ccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagt 197  Q
    ||||| ||| ||    |||||||||| | ||||| | |||||||||| ||||||||||    
T  45909555 ccaaattgtaggtcctacattgattttacccaataaaagagtgagtgttagagagagt 45909612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 200
Target Start/End: Original strand, 25980824 - 25980908
Alignment:
Q  116 caccattttatgtgggatccatttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgtt 200  Q
    |||||||||||||||| |  ||||||||| ||||| || ||||||||||||||||||| | |||  | |||||||||| ||||||    
T  25980824 caccattttatgtggggttaatttccaaaatgtggtatccacattgatttcatccaataaaagaacgggtgctagagaaagtgtt 25980908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 32213053 - 32212981
Alignment:
Q  37 agaagaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    ||||||||||||  ||||||| |||||||||| |||||||| |||||  ||| | ||||||||||||||||||    
T  32213053 agaagaatgctagtaacactcactttttaacactctctctagcactctatcttttattggatgaaatcaatgt 32212981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 168
Target Start/End: Original strand, 48745238 - 48745353
Alignment:
Q  53 cactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttccaaagtgtggga 152  Q
    |||||||||||||||| |||||||| || ||||||| | ||||| | ||||| ||||||    || || |||||||||||||||||| ||| |||||| |    
T  48745238 cactctctttttaacattctctctaacattcactctcttattgggtcaaatccatgtgggtctcatcaatttatgtgggatccatttgcaatgtgtggta 48745337  T
Q  153 ttcacattgatttcat 168  Q
    | |||||  |||||||    
T  48745338 tccacataaatttcat 48745353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 7775068 - 7775023
Alignment:
Q  156 acattgatttcatccaatcagagagtgagtgctagagagagtgttg 201  Q
    |||||||||||||||||| | ||||||||||||| |||||||||||    
T  7775068 acattgatttcatccaataaaagagtgagtgctatagagagtgttg 7775023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 11824139 - 11824094
Alignment:
Q  156 acattgatttcatccaatcagagagtgagtgctagagagagtgttg 201  Q
    |||||||||||||||||| | |||||||||||||||||||| ||||    
T  11824139 acattgatttcatccaataaaagagtgagtgctagagagagcgttg 11824094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 19422946 - 19422991
Alignment:
Q  156 acattgatttcatccaatcagagagtgagtgctagagagagtgttg 201  Q
    |||||||||||||||||| | |||||||||| ||||||||||||||    
T  19422946 acattgatttcatccaatgaaagagtgagtgatagagagagtgttg 19422991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 213
Target Start/End: Original strand, 26459068 - 26459165
Alignment:
Q  116 caccattttatgtgggatccatttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgttgctagcactcctc 213  Q
    ||||| |||||||||| |||||||| ||||||| ||   ||||||| ||| | | ||| | | ||||||| ||||||||||||||||||||| |||||    
T  26459068 caccactttatgtgggttccatttctaaagtgtaggtcccacattgtttttacctaataaaaaagtgagttctagagagagtgttgctagcattcctc 26459165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 27949277 - 27949338
Alignment:
Q  45 gctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaa 106  Q
    |||| |||||||| |||||||||| |||||||| ||||||||||   |||||||||||||||    
T  27949277 gctaacaacactcactttttaacactctctctaacactcactcttgtattggatgaaatcaa 27949338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 44511048 - 44511093
Alignment:
Q  156 acattgatttcatccaatcagagagtgagtgctagagagagtgttg 201  Q
    |||||||||||||||||| | | |||||||||||||||||||||||    
T  44511048 acattgatttcatccaataaaaaagtgagtgctagagagagtgttg 44511093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 13919963 - 13919895
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    |||||||| |||||||||||||| | || |||||||| |||||||||  | ||||| ||||||||||||    
T  13919963 gaatgctagcaacactctcttttgagcactctctctagcactcactcatttattgggtgaaatcaatgt 13919895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 22189939 - 22190007
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    ||||||||  |||||||  |||| |||| |||||||| |||||||||| | ||||||||||||||||||    
T  22189939 gaatgctagaaacactcatttttcaacactctctctagcactcactcttttattggatgaaatcaatgt 22190007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 32205073 - 32205144
Alignment:
Q  35 aaagaagaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    ||||| |||||||| |||||||| ||||| |||| ||||||||   |||||||| | ||||||||||||||||||    
T  32205073 aaagaggaatgctagcaacactcacttttgaacactctctcta---ctcactcttttattggatgaaatcaatgt 32205144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 33008104 - 33008168
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatca 105  Q
    |||||||| |||||||| ||||| |||| | |||||| |||||||||| | ||||||||||||||    
T  33008104 gaatgctagcaacactcacttttgaacactatctctagcactcactcttttattggatgaaatca 33008168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 111
Target Start/End: Complemental strand, 17749874 - 17749807
Alignment:
Q  44 tgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtgg 111  Q
    ||||| ||||||||||||||  ||| |||||||| |||||||||| | ||||| | ||||||||||||    
T  17749874 tgctagcaacactctcttttggacactctctctaacactcactctctcattgggttaaatcaatgtgg 17749807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 111
Target Start/End: Original strand, 24539123 - 24539190
Alignment:
Q  44 tgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtgg 111  Q
    ||||| ||||||||||||||  ||| |||||||| |||||||||| | ||||| | ||||||||||||    
T  24539123 tgctagcaacactctcttttggacactctctctaacactcactctctcattgggttaaatcaatgtgg 24539190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 165
Target Start/End: Original strand, 46067940 - 46068060
Alignment:
Q  44 tgctatcaacactctctttttaacaatctctc-tatcactcactctataattggatgaaatcaatgtggactccaccattttatgtgggatccatttcca 142  Q
    ||||| |||||||||||||||| |  |||||| || |||||||||  | ||||| ||||||||||||    ||||||| |||||||||| |||||||||     
T  46067940 tgctagcaacactctctttttagcgctctctcttaacactcactcccttattggttgaaatcaatgtatgttccaccactttatgtgggttccatttccg 46068039  T
Q  143 aagtgtgggattcacattgattt 165  Q
    || ||| |||  |||||||||||    
T  46068040 aattgtagga--cacattgattt 46068060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 85
Target Start/End: Complemental strand, 2520776 - 2520726
Alignment:
Q  35 aaagaagaatgctatcaacactctctttttaacaatctctctatcactcac 85  Q
    ||||| |||||||| |||||||||||||| |||| |||| |||||||||||    
T  2520776 aaagaggaatgctagcaacactctcttttcaacactctcactatcactcac 2520726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 111
Target Start/End: Complemental strand, 27888464 - 27888394
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtgg 111  Q
    |||||||| |||||||||||||| | || |||||||| |||||||||| | ||||| | |||||| |||||    
T  27888464 gaatgctagcaacactctcttttgagcactctctctaacactcactctcttattggtttaaatcattgtgg 27888394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 45909636 - 45909571
Alignment:
Q  44 tgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    ||||| |||||||||||||| || | |||||||| |||||||||| | ||||| | ||||||||||    
T  45909636 tgctagcaacactctcttttgaatactctctctaacactcactcttttattgggtaaaatcaatgt 45909571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 196
Target Start/End: Original strand, 557450 - 557530
Alignment:
Q  116 caccattttatgtgggatccatttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagag 196  Q
    ||||| ||||||||||||||||||  || |||||  |  |||||  |||||||||||| |||||||||||| |||| ||||    
T  557450 caccactttatgtgggatccatttttaatgtgtgatacccacatgaatttcatccaataagagagtgagtgttagaaagag 557530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 14759826 - 14759758
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    |||||||| |||||||||||||| | || |||| ||| ||| |||||| | |||||||||||| |||||    
T  14759826 gaatgctagcaacactctcttttgagcactctccctagcacccactcttttattggatgaaattaatgt 14759758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 112
Target Start/End: Complemental strand, 25980921 - 25980861
Alignment:
Q  52 acactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgtgga 112  Q
    ||||||||||||||||| | |||||| ||| |  ||| | |||||||||||||||||||||    
T  25980921 acactctctttttaacactttctctagcacccgttcttttattggatgaaatcaatgtgga 25980861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 26703437 - 26703505
Alignment:
Q  41 gaatgctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    |||||||| |||||||||||| | | || |||||||| |||||||||| | ||||| |||||| |||||    
T  26703437 gaatgctagcaacactctcttctgagcactctctctagcactcactcttttattgggtgaaataaatgt 26703505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 29310495 - 29310531
Alignment:
Q  116 caccattttatgtgggatccatttccaaagtgtggga 152  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  29310495 caccactttatgtgggatccatttccatagtgtggga 29310531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 32212981 - 32213025
Alignment:
Q  156 acattgatttcatccaatcagagagtgagtgctagagagagtgtt 200  Q
    |||||||||||||||||| | |||  |||||||||||||||||||    
T  32212981 acattgatttcatccaataaaagatagagtgctagagagagtgtt 32213025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 33008168 - 33008128
Alignment:
Q  160 tgatttcatccaatcagagagtgagtgctagagagagtgtt 200  Q
    |||||||||||||| | ||||||||||||||||| ||||||    
T  33008168 tgatttcatccaataaaagagtgagtgctagagatagtgtt 33008128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 34281104 - 34281064
Alignment:
Q  42 aatgctatcaacactctctttttaacaatctctctatcact 82  Q
    |||||||||||||||||||||| |||| |||||||| ||||    
T  34281104 aatgctatcaacactctcttttgaacattctctctaacact 34281064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 200
Target Start/End: Original strand, 43930010 - 43930116
Alignment:
Q  92 attggatgaaatcaatgtggactccaccattttatgtgggatccatttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgctaga 191  Q
    ||||||| |||| ||||||| ||| |||| ||||| || ||||||||| ||| |||||| |  |||||  |||||| ||||| | |||||||||| ||||    
T  43930010 attggataaaattaatgtggtctc-accactttat-tgtgatccattttcaatgtgtggtacccacatgaatttcacccaataaaagagtgagtgttaga 43930107  T
Q  192 gagagtgtt 200  Q
    |||||||||    
T  43930108 gagagtgtt 43930116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 44511112 - 44511048
Alignment:
Q  45 gctatcaacactctctttttaacaatctctctatcactcactctataattggatgaaatcaatgt 109  Q
    |||| |||||||  ||||| |||| |||||||| |||||||| | | ||||||||||||||||||    
T  44511112 gctaacaacacttacttttcaacactctctctagcactcacttttttattggatgaaatcaatgt 44511048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 125 - 215
Target Start/End: Complemental strand, 14112 - 14022
Alignment:
Q  125 atgtgggatccatttccaaagtgtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgttgctagcactcctcta 215  Q
    ||||| || ||||||||||| |||||||| ||||||||||| | | ||| |||||||| ||| ||||||||||||| ||||||||||||||    
T  14112 atgtgagacccatttccaaaatgtgggatccacattgattttacctaataagagagtgggtgttagagagagtgttcctagcactcctcta 14022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0543 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0543
Description:

Target: scaffold0543; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 9741 - 9674
Alignment:
Q  147 gtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgttgctagcactcctct 214  Q
    |||||||  |||||||||||||||||| | | |||||||| |||||||||||||||||||| ||||||    
T  9741 gtgggatatacattgatttcatccaataaaaaagtgagtgttagagagagtgttgctagcattcctct 9674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0492 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 11287 - 11220
Alignment:
Q  147 gtgggattcacattgatttcatccaatcagagagtgagtgctagagagagtgttgctagcactcctct 214  Q
    |||||||  |||||||||||||||||| | | |||||||| |||||||||||||||||||| ||||||    
T  11287 gtgggatatacattgatttcatccaataaaaaagtgagtgttagagagagtgttgctagcattcctct 11220  T

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Target: scaffold0005 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 201
Target Start/End: Complemental strand, 296897 - 296859
Alignment:
Q  163 tttcatccaatcagagagtgagtgctagagagagtgttg 201  Q
    ||||||||||| |||||||||||| ||||||||||||||    
T  296897 tttcatccaataagagagtgagtgttagagagagtgttg 296859  T

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