View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18885_high_4 (Length: 330)
Name: NF18885_high_4
Description: NF18885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18885_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 322
Target Start/End: Original strand, 37902881 - 37903184
Alignment:
| Q |
19 |
gctgaagcatcacctttctgctttgggtttgtagattggagaagattcaacagcagttctaatcctgaagatttagcagcatagtgattaaaaatacttt |
118 |
Q |
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| T |
37902881 |
gctgaagcatcacctttctgctttgggtttgtagattggagaagattcaacagcagttctaatcctgaaaatttagcagcatagtgattaaaaatacttt |
37902980 |
T |
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| Q |
119 |
ctatgcactgccagagagggggacaagaaaagtaaattttaaagtttgttaccattattgtcaataaatatagttttccgatcatcaggggaacataaat |
218 |
Q |
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| T |
37902981 |
ctatgcactgccagagagggggacaaaaaaaataaattttaaagtttgttaccattattgtcaataaatatagttttccgatcatcaggggaacataaat |
37903080 |
T |
|
| Q |
219 |
gtgcaagagcaagagctacacgtatttgaagatccttttccccagtgcgcataagatataacatgtgtttcagtacctgcaaaagaggaattgatagaat |
318 |
Q |
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| T |
37903081 |
gtgcaagagcaagagctacacgtatttgaagatccttttccccagtgcgcataagatataacatgtgtttcagtacctgcaaaagaggaattgatagaat |
37903180 |
T |
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| Q |
319 |
aatc |
322 |
Q |
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|||| |
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| T |
37903181 |
aatc |
37903184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 322
Target Start/End: Original strand, 37909392 - 37909695
Alignment:
| Q |
19 |
gctgaagcatcacctttctgctttgggtttgtagattggagaagattcaacagcagttctaatcctgaagatttagcagcatagtgattaaaaatacttt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37909392 |
gctgaagcatcacctttctgctttgggtttgtagattggagaagattcaacagcagttctaatcctgaaaatttagcagcatagtgattaaaaatacttt |
37909491 |
T |
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| Q |
119 |
ctatgcactgccagagagggggacaagaaaagtaaattttaaagtttgttaccattattgtcaataaatatagttttccgatcatcaggggaacataaat |
218 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37909492 |
ctatgcactgccagagagggggacaaaaaaaataaattttaaagtttgttaccattattgtcaataaatatagttttccgatcatcaggggaacataaat |
37909591 |
T |
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| Q |
219 |
gtgcaagagcaagagctacacgtatttgaagatccttttccccagtgcgcataagatataacatgtgtttcagtacctgcaaaagaggaattgatagaat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37909592 |
gtgcaagagcaagagctacacgtatttgaagatccttttccccagtgcgcataagatataacatgtgtttcagtacctgcaaaagaggaattgatagaat |
37909691 |
T |
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| Q |
319 |
aatc |
322 |
Q |
| |
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|||| |
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| T |
37909692 |
aatc |
37909695 |
T |
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