View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18885_high_6 (Length: 302)

Name: NF18885_high_6
Description: NF18885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18885_high_6
NF18885_high_6
[»] chr6 (70 HSPs)
chr6 (18-299)||(24886392-24886673)
chr6 (130-299)||(24730858-24731028)
chr6 (130-299)||(24890072-24890242)
chr6 (130-283)||(28926389-28926543)
chr6 (130-283)||(29887300-29887454)
chr6 (130-297)||(29882438-29882606)
chr6 (130-297)||(29909594-29909762)
chr6 (134-278)||(30060009-30060154)
chr6 (148-283)||(29835236-29835372)
chr6 (148-283)||(29894574-29894710)
chr6 (130-283)||(29073766-29073920)
chr6 (130-283)||(29078530-29078684)
chr6 (130-283)||(29106339-29106493)
chr6 (130-299)||(29357805-29357975)
chr6 (148-283)||(29866670-29866806)
chr6 (130-283)||(29905642-29905796)
chr6 (130-297)||(29903249-29903417)
chr6 (130-283)||(29211235-29211389)
chr6 (130-283)||(30118583-30118737)
chr6 (130-283)||(24263594-24263748)
chr6 (130-283)||(30126897-30127051)
chr6 (130-299)||(29116264-29116434)
chr6 (130-278)||(30061842-30061991)
chr6 (130-299)||(29099346-29099516)
chr6 (130-283)||(29929276-29929430)
chr6 (118-284)||(29946428-29946595)
chr6 (18-120)||(24890300-24890402)
chr6 (130-283)||(29348440-29348594)
chr6 (130-283)||(29085021-29085175)
chr6 (130-296)||(29889733-29889900)
chr6 (204-299)||(29912050-29912145)
chr6 (130-283)||(25451121-25451275)
chr6 (18-120)||(29887140-29887242)
chr6 (130-294)||(29876828-29876993)
chr6 (18-126)||(29905482-29905590)
chr6 (18-126)||(30118789-30118897)
chr6 (26-120)||(29835066-29835160)
chr6 (26-120)||(29866500-29866594)
chr6 (18-120)||(30999992-31000094)
chr6 (18-126)||(28926595-28926703)
chr6 (18-120)||(24730698-24730800)
chr6 (130-262)||(29366284-29366417)
chr6 (204-297)||(29914070-29914163)
chr6 (130-277)||(30149530-30149678)
chr6 (130-225)||(30999838-30999934)
chr6 (163-277)||(29949745-29949860)
chr6 (163-277)||(29953542-29953657)
chr6 (18-120)||(29946280-29946382)
chr6 (18-126)||(29897920-29898028)
chr6 (130-217)||(29898080-29898168)
chr6 (18-120)||(30060216-30060318)
chr6 (18-120)||(30127109-30127211)
chr6 (25-120)||(29348652-29348747)
chr6 (158-271)||(16702009-16702123)
chr6 (142-274)||(30053442-30053575)
chr6 (232-296)||(24271793-24271857)
chr6 (25-120)||(29099193-29099288)
chr6 (25-120)||(29116111-29116206)
chr6 (25-120)||(29366475-29366570)
chr6 (130-219)||(24271853-24271943)
chr6 (18-120)||(29876668-29876770)
chr6 (130-274)||(30135128-30135274)
chr6 (163-271)||(15727043-15727152)
chr6 (130-274)||(24898080-24898225)
chr6 (130-217)||(24739103-24739191)
chr6 (166-277)||(24942239-24942351)
chr6 (24-122)||(25450967-25451065)
chr6 (46-112)||(29889601-29889667)
chr6 (130-226)||(21160524-21160621)
chr6 (60-120)||(30062049-30062109)
[»] scaffold0573 (2 HSPs)
scaffold0573 (130-283)||(4140-4294)
scaffold0573 (18-126)||(3980-4088)
[»] scaffold0237 (1 HSPs)
scaffold0237 (150-299)||(22366-22516)
[»] chr2 (2 HSPs)
chr2 (118-295)||(15062706-15062884)
chr2 (18-122)||(15062928-15063032)
[»] chr3 (6 HSPs)
chr3 (130-244)||(24219116-24219231)
chr3 (130-217)||(24226823-24226911)
chr3 (129-268)||(11991314-11991454)
chr3 (21-120)||(24219289-24219388)
chr3 (163-273)||(16351086-16351197)
chr3 (46-112)||(33997811-33997877)
[»] scaffold0572 (1 HSPs)
scaffold0572 (130-273)||(3236-3380)
[»] scaffold0054 (2 HSPs)
scaffold0054 (130-188)||(53534-53592)
scaffold0054 (222-295)||(53462-53535)
[»] chr1 (3 HSPs)
chr1 (130-273)||(17251316-17251460)
chr1 (135-290)||(10130145-10130301)
chr1 (130-273)||(19490253-19490397)
[»] chr4 (1 HSPs)
chr4 (163-277)||(44262441-44262556)
[»] chr8 (1 HSPs)
chr8 (176-277)||(9782588-9782690)
[»] scaffold0429 (1 HSPs)
scaffold0429 (142-273)||(6211-6343)
[»] scaffold0014 (2 HSPs)
scaffold0014 (142-273)||(137389-137521)
scaffold0014 (142-273)||(104590-104722)
[»] chr7 (2 HSPs)
chr7 (163-273)||(3643073-3643184)
chr7 (129-226)||(8651267-8651365)
[»] scaffold0110 (1 HSPs)
scaffold0110 (130-217)||(43777-43865)
[»] scaffold0019 (1 HSPs)
scaffold0019 (163-273)||(125975-126086)


Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 70)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 24886673 - 24886392
Alignment:
18 taatggattttgcaaggttaaaatgatagatgaagccataaatctctatgaagaaatgcattgtagaaaaaatattcctgatgtggtaacttacagttcc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
24886673 taatggattttgcaaggttaaaatgatagatgaagccataaatctctatgaagaaatgcattgtagaaaaaatattcctgatgtggtaacttacagttcc 24886574  T
118 cttgtcgatataatgcatgatagaggtcagccacctgatataattacttacaattctatattagatgctttgtgaaaaaccatcatgttgac-aaggcaa 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||| |||||||    
24886573 cttgtcgatataatgcatgatagaggtcagccacctgatataattacttacaattctatattggatgctttatgaaaaaccatcatg-tgacaaaggcaa 24886475  T
217 ttgcattattaacaaaattgaaagaccagggtattcgaccagatatgtacacatacactatttttatcaagggattgtgccaa 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
24886474 ttgcattattaacaaaattgaaagaccagggtattcgaccagatatgtacacatacactatttttatcaagggattgtgccaa 24886392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 130 - 299
Target Start/End: Original strand, 24730858 - 24731028
Alignment:
130 atgcatgatagaggtcagccacctgatataattacttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaattgcattattaa 228  Q
    ||||||||||||||||| |||||| ||||||| ||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||    
24730858 atgcatgatagaggtcaaccacctaatataataacttacaattctatattggatgctttatgcaaaaaccatcatgttgacaaggcaattgcattattaa 24730957  T
229 caaaattgaaagaccagggtattcgaccagatatgtacacatacactatttttatcaagggattgtgccaa 299  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
24730958 caaatttgaaagaccagggtattcgaccagatatgtacacatacactgttcttatcaagggattgtgccaa 24731028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 130 - 299
Target Start/End: Complemental strand, 24890242 - 24890072
Alignment:
130 atgcatgatagaggtcagccacctgatataattacttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaattgcattattaa 228  Q
    |||||||||||||||||||||||| ||||| ||||||||| ||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||    
24890242 atgcatgatagaggtcagccacctaatatagttacttacagttctatattggatgctttatgcaaaaaccatcatgttgacaaggcaattgcattattaa 24890143  T
229 caaaattgaaagaccagggtattcgaccagatatgtacacatacactatttttatcaagggattgtgccaa 299  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||    
24890142 caaatttgaaagaccagggtattcgaccagatatgtacacatacaccattcttatcaagggactgtgccaa 24890072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 130 - 283
Target Start/End: Complemental strand, 28926543 - 28926389
Alignment:
130 atgcatgatagaggtcagccacctgatataattacttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaattgcattattaa 228  Q
    ||||||||||||||||| |||||||||||||||||||||| |||| |||| |||||||| || |||||||||||||||||||||||||||||||||||||    
28926543 atgcatgatagaggtcaaccacctgatataattacttacagttctctattggatgctttatgcaaaaaccatcatgttgacaaggcaattgcattattaa 28926444  T
229 caaaattgaaagaccagggtattcgaccagatatgtacacatacactatttttat 283  Q
    |||||||||||||||||||| ||| |||| |||||||||||||||||||| ||||    
28926443 caaaattgaaagaccagggtcttcaaccaaatatgtacacatacactattcttat 28926389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 130 - 283
Target Start/End: Original strand, 29887300 - 29887454
Alignment:
130 atgcatgatagaggtcagccacctgatataattacttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaattgcattattaa 228  Q
    ||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||| || ||||||||||| ||||||||||||||||| |||||||    
29887300 atgcatgatagaggtcaaccacctgatataattacttacagttctttattagatgctttatgcaaaaaccatcaggttgacaaggcaattgcgttattaa 29887399  T
229 caaaattgaaagaccagggtattcgaccagatatgtacacatacactatttttat 283  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||| ||||    
29887400 caaatttgaaagaccagggtattcgaccaaatatgtacacatacactattcttat 29887454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 130 - 297
Target Start/End: Original strand, 29882438 - 29882606
Alignment:
130 atgcatgatagaggtcagccacctgatataattacttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaattgcattattaa 228  Q
    ||||||||| |||| || | ||||||||||||||| |||||||||||||| |||||||| || ||||| |||||||||||||| ||||||||||||||||    
29882438 atgcatgatcgagggcaacaacctgatataattacctacaattctatattggatgctttatgcaaaaaacatcatgttgacaaagcaattgcattattaa 29882537  T
229 caaaattgaaagaccagggtattcgaccagatatgtacacatacactatttttatcaagggattgtgcc 297  Q
    |||||||||||| ||| |||||||||||||||||| |||||||||||||| || |||||||||||||||    
29882538 caaaattgaaaggccaaggtattcgaccagatatgaacacatacactattcttgtcaagggattgtgcc 29882606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 130 - 297
Target Start/End: Original strand, 29909594 - 29909762
Alignment:
130 atgcatgatagaggtcagccacctgatataattacttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaattgcattattaa 228  Q
    ||||||||| |||| || | ||||||||||||||| |||||||||||||| |||||||| || ||||| |||||||||||||| ||||||||||||||||    
29909594 atgcatgatcgagggcaacaacctgatataattacctacaattctatattggatgctttatgcaaaaaacatcatgttgacaaagcaattgcattattaa 29909693  T
229 caaaattgaaagaccagggtattcgaccagatatgtacacatacactatttttatcaagggattgtgcc 297  Q
    |||||||||||| ||| |||||||||||||||||| |||||||||||||| || |||||||||||||||    
29909694 caaaattgaaaggccaaggtattcgaccagatatgaacacatacactattcttgtcaagggattgtgcc 29909762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 134 - 278
Target Start/End: Complemental strand, 30060154 - 30060009
Alignment:
134 atgatagaggtcagccacctgatataattacttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaattgcattattaacaaa 232  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||| ||||||| || ||||||||||| |||||||||||||||||||||||||||||    
30060154 atgatagaggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcaggttgacaaggcaattgcattattaacaaa 30060055  T
233 attgaaagaccagggtattcgaccagatatgtacacatacactatt 278  Q
    |||||||||||||||||| |||||| |||| |||||| ||||||||    
30060054 attgaaagaccagggtatccgaccaaatatttacacacacactatt 30060009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 148 - 283
Target Start/End: Original strand, 29835236 - 29835372
Alignment:
148 ccacctgatataattacttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaattgcattattaacaaaattgaaagaccagg 246  Q
    |||||||||||||||||||||| ||||||||| |||||||| || ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
29835236 ccacctgatataattacttacagttctatattggatgctttatgcaaaaaccatcaggttgacaaggcaattgcgttattaacaaaattgaaagaccagg 29835335  T
247 gtattcgaccagatatgtacacatacactatttttat 283  Q
    ||||||||||| |||||||||||||||||||| ||||    
29835336 gtattcgaccaaatatgtacacatacactattcttat 29835372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 148 - 283
Target Start/End: Original strand, 29894574 - 29894710
Alignment:
148 ccacctgatataattacttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaattgcattattaacaaaattgaaagaccagg 246  Q
    |||||||||||||||||||||| ||||||||| |||||||| || ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
29894574 ccacctgatataattacttacagttctatattggatgctttatgcaaaaaccatcaggttgacaaggcaattgcgttattaacaaaattgaaagaccagg 29894673  T
247 gtattcgaccagatatgtacacatacactatttttat 283  Q
    ||||||||||| |||||||||||||||||||| ||||    
29894674 gtattcgaccaaatatgtacacatacactattcttat 29894710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 130 - 283
Target Start/End: Original strand, 29073766 - 29073920
Alignment:
130 atgcatgatagaggtcagccacctgatataattacttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaattgcattattaa 228  Q
    |||||||||||||||   |||||||||||||||||||||| ||||||||| |||||||| || ||||||||||| |||||||||||||||||||||||||    
29073766 atgcatgatagaggtgtaccacctgatataattacttacagttctatattggatgctttatgcaaaaaccatcaggttgacaaggcaattgcattattaa 29073865  T
229 caaaattgaaagaccagggtattcgaccagatatgtacacatacactatttttat 283  Q
    |||||||||||||||| ||||||||||||  |||| |||||||||||||| ||||    
29073866 caaaattgaaagaccaaggtattcgaccaactatgcacacatacactattcttat 29073920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 130 - 283
Target Start/End: Original strand, 29078530 - 29078684
Alignment:
130 atgcatgatagaggtcagccacctgatataattacttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaattgcattattaa 228  Q
    |||||||||||||||   |||||||||||||||||||||| ||||||||| |||||||| || ||||||||||| |||||||||||||||||||||||||    
29078530 atgcatgatagaggtgtaccacctgatataattacttacagttctatattggatgctttatgcaaaaaccatcaggttgacaaggcaattgcattattaa 29078629  T
229 caaaattgaaagaccagggtattcgaccagatatgtacacatacactatttttat 283  Q
    |||||||||||||||| ||||||||||||  |||| |||||||||||||| ||||    
29078630 caaaattgaaagaccaaggtattcgaccaactatgcacacatacactattcttat 29078684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 130 - 283
Target Start/End: Original strand, 29106339 - 29106493
Alignment:
130 atgcatgatagaggtcagccacctgatataattacttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaattgcattattaa 228  Q
    |||||||||||||||   |||||||||||||||||||||| ||||||||| |||||||| || ||||||||||| |||||||||||||||||||||||||    
29106339 atgcatgatagaggtgtaccacctgatataattacttacagttctatattggatgctttatgcaaaaaccatcaggttgacaaggcaattgcattattaa 29106438  T
229 caaaattgaaagaccagggtattcgaccagatatgtacacatacactatttttat 283  Q
    |||||||||||||||| ||||||||||||  |||| |||||||||||||| ||||    
29106439 caaaattgaaagaccaaggtattcgaccaactatgcacacatacactattcttat 29106493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 130 - 299
Target Start/End: Complemental strand, 29357975 - 29357805
Alignment:
130 atgcatgatagaggtcagccacctgatataattacttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaattgcattattaa 228  Q
    ||||||||||||||||| |||||| ||||| ||||||||| ||||||||| |||||||| || ||||||||||| |||||||| |||||||| |||||||    
29357975 atgcatgatagaggtcaaccacctaatatagttacttacagttctatattggatgctttatgcaaaaaccatcaggttgacaatgcaattgcgttattaa 29357876  T
229 caaaattgaaagaccagggtattcgaccagatatgtacacatacactatttttatcaagggattgtgccaa 299  Q
    || |  ||||| |||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||    
29357875 cacagatgaaaaaccagggtattcaaccaaatatgtacacatacactattcttatcaagggattgtgccaa 29357805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 148 - 283
Target Start/End: Original strand, 29866670 - 29866806
Alignment:
148 ccacctgatataattacttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaattgcattattaacaaaattgaaagaccagg 246  Q
    |||||||||||||||||||||| ||||||||| |||||||| || ||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||    
29866670 ccacctgatataattacttacagttctatattggatgctttatgcaaaaaccatcaggttgacaaggcaattgcgttattaacaaatttgaaagaccagg 29866769  T
247 gtattcgaccagatatgtacacatacactatttttat 283  Q
    ||||||||||| |||||||||||||||||||| ||||    
29866770 gtattcgaccaaatatgtacacatacactattcttat 29866806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 130 - 283
Target Start/End: Original strand, 29905642 - 29905796
Alignment:
130 atgcatgatagaggtcagccacctgatataattacttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaattgcattattaa 228  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||| || |||||| |||| ||||||||||||||  |||||||||    
29905642 atgcatgatagaggtcagccacctgatataattacttagagttctatattggatgctttatgcaaaaactatcaggttgacaaggcaatcacattattaa 29905741  T
229 caaaattgaaagaccagggtattcgaccagatatgtacacatacactatttttat 283  Q
    ||||||||||||||| |||||||| |||| |||||||||||||||| ||| ||||    
29905742 caaaattgaaagacctgggtattcaaccaaatatgtacacatacaccattcttat 29905796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 130 - 297
Target Start/End: Original strand, 29903249 - 29903417
Alignment:
130 atgcatgatagaggtcagccacctgatataattacttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaattgcattattaa 228  Q
    ||||||||| |||| || | ||||||||||||||| |||||||||||||| |||||||| || ||||| ||||||| || ||| |||||||| |||||||    
29903249 atgcatgatcgagggcaacaacctgatataattacctacaattctatattggatgctttatgcaaaaaacatcatgctggcaaagcaattgcgttattaa 29903348  T
229 caaaattgaaagaccagggtattcgaccagatatgtacacatacactatttttatcaagggattgtgcc 297  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||| ||| || |||||||||||||||    
29903349 caaaattgaaagaccagggtattcgaccaaatatgaacacatacaccattcttgtcaagggattgtgcc 29903417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 130 - 283
Target Start/End: Complemental strand, 29211389 - 29211235
Alignment:
130 atgcatgatagaggtcagccacctgatataattacttacaattctatattagatgctttgtgaaaaacc-atcatgttgacaaggcaattgcattattaa 228  Q
    ||||||||||||||||| |||||| ||||| ||||||||| ||||||||| |||||||| || |||||| |||  |||||||||||| ||||||||||||    
29211389 atgcatgatagaggtcaaccacctaatatagttacttacagttctatattggatgctttatgcaaaacccatcgggttgacaaggcagttgcattattaa 29211290  T
229 caaaattgaaagaccagggtattcgaccagatatgtacacatacactatttttat 283  Q
    |||||||||||||||| |||||||||||| ||||| |||||||||||||| ||||    
29211289 caaaattgaaagaccaaggtattcgaccaaatatgcacacatacactattcttat 29211235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 130 - 283
Target Start/End: Complemental strand, 30118737 - 30118583
Alignment:
130 atgcatgatagaggtcagccacctgatataattacttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaattgcattattaa 228  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||| || |||||| |||| ||||||||||||||  |||||||||    
30118737 atgcatgatagaggtcagccacctgatataattacttagagttctatattggatgctttatgcaaaaactatcaggttgacaaggcaatcacattattaa 30118638  T
229 caaaattgaaagaccagggtattcgaccagatatgtacacatacactatttttat 283  Q
    ||||||||||||||| ||| |||| |||| |||||||||||||||| ||| ||||    
30118637 caaaattgaaagacctgggaattcaaccaaatatgtacacatacaccattcttat 30118583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 130 - 283
Target Start/End: Complemental strand, 24263748 - 24263594
Alignment:
130 atgcatgatagaggtcagccacctgatataattacttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaattgcattattaa 228  Q
    ||||||||| |||| || | |||||||||||| || |||| ||||||||| ||||| || || ||||||||||  |||||||||||||||||||||||||    
24263748 atgcatgatcgagggcaacaacctgatataatcacgtacagttctatattggatgccttatgcaaaaaccatctggttgacaaggcaattgcattattaa 24263649  T
229 caaaattgaaagaccagggtattcgaccagatatgtacacatacactatttttat 283  Q
     |||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
24263648 taaaattgaaagaccagggtattcgaccaaatatgtacacatacactattcttat 24263594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 130 - 283
Target Start/End: Complemental strand, 30127051 - 30126897
Alignment:
130 atgcatgatagaggtcagccacctgatataattacttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaattgcattattaa 228  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||| || ||||||||||| |||||||| ||||||||||| ||||    
30127051 atgcatgatagaggtcaaccacctgatataattatttacaattctatattggatgctttatgcaaaaaccatcaggttgacaaagcaattgcattgttaa 30126952  T
229 caaaattgaaagaccagggtattcgaccagatatgtacacatacactatttttat 283  Q
    | ||||| ||| |||||||||||| ||||  | ||||||||||||||||| ||||    
30126951 cgaaatttaaaaaccagggtattcaaccaagtgtgtacacatacactattcttat 30126897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 130 - 299
Target Start/End: Original strand, 29116264 - 29116434
Alignment:
130 atgcatgatagaggtcagccacctgatataattacttacaattctatattagatgctttgtgaaaaa-ccatcatgttgacaaggcaattgcattattaa 228  Q
    |||||||||||||||   ||||||  ||||  ||||||||||||||||||||||||||| || |||| |||||| |||||||| ||||||||||| ||||    
29116264 atgcatgatagaggtgtaccacctactatacgtacttacaattctatattagatgctttatgcaaaatccatcaagttgacaaagcaattgcattgttaa 29116363  T
229 caaaattgaaagaccagggtattcgaccagatatgtacacatacactatttttatcaagggattgtgccaa 299  Q
    | |||||||||||| ||||||||| |||| ||||||||||||||| |||| ||||||| ||| ||||||||    
29116364 cgaaattgaaagacaagggtattcaaccaaatatgtacacatacagtattcttatcaaaggactgtgccaa 29116434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 130 - 278
Target Start/End: Complemental strand, 30061991 - 30061842
Alignment:
130 atgcatgatagaggtcagccacctgatataattacttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaattgcattattaa 228  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||| || |||  ||||||| |||||||||||||  ||||||||     
30061991 atgcatgatagaggtcaaccacctaatataattacttacaattctatattggatgctttatgcaaacgccatcatcttgacaaggcaatcacattattat 30061892  T
229 caaaattgaaagaccagggtattcgaccagatatgtacacatacactatt 278  Q
    ||||||||||||| |||||||||| |||  |||| |||||||||||||||    
30061891 caaaattgaaagatcagggtattcaaccgaatatttacacatacactatt 30061842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 130 - 299
Target Start/End: Original strand, 29099346 - 29099516
Alignment:
130 atgcatgatagaggtcagccacctgatataattacttacaattctatattagatgctttgtgaaaaacc-atcatgttgacaaggcaattgcattattaa 228  Q
    |||||||||||||||   |||||| |||||  ||||||||||||||||||||||||||| || |||||| |||| |||||||| ||||||||||| ||||    
29099346 atgcatgatagaggtgtaccacctaatatatgtacttacaattctatattagatgctttatgcaaaacccatcaagttgacaaagcaattgcattgttaa 29099445  T
229 caaaattgaaagaccagggtattcgaccagatatgtacacatacactatttttatcaagggattgtgccaa 299  Q
    | ||||| |||||| ||||| ||| ||||||||| | |||||||| |||| ||||||| ||| ||||||||    
29099446 cgaaatttaaagacaagggttttcaaccagatatatccacatacagtattcttatcaaaggactgtgccaa 29099516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 130 - 283
Target Start/End: Original strand, 29929276 - 29929430
Alignment:
130 atgcatgatagaggtcagccacctgatataattacttacaattctatattagatgctttgtgaaaaacc-atcatgttgacaaggcaattgcattattaa 228  Q
    |||||||||||||||    ||||| ||||| |||||||||||||||||||||||||||| || |||||| |||| |||||||| ||||||||||| ||||    
29929276 atgcatgatagaggtgtagcacctaatatagttacttacaattctatattagatgctttatgcaaaacccatcaggttgacaaagcaattgcattgttaa 29929375  T
229 caaaattgaaagaccagggtattcgaccagatatgtacacatacactatttttat 283  Q
    | ||||| |||||||||||||||| ||||  | ||||||||||||||||| ||||    
29929376 cgaaattcaaagaccagggtattcaaccaagtgtgtacacatacactattcttat 29929430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 118 - 284
Target Start/End: Original strand, 29946428 - 29946595
Alignment:
118 cttgtcgatataatgcatgatagaggtcagccacctgatataattacttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaa 216  Q
    |||||||||  |||||||||||||||||| |||||| |||||||||||||||| |||||||| |||| ||| || || ||| || |||||||||||||||    
29946428 cttgtcgatgaaatgcatgatagaggtcaaccacctaatataattacttacaactctatattggatgttttatgcaagaactatgatgttgacaaggcaa 29946527  T
217 ttgcattattaacaaaattgaaagaccagggtattcgaccagatatgtacacatacactatttttatc 284  Q
    ||| ||| ||||||||| | |||||||||| ||||| ||||  ||||||||| |||| |||| |||||    
29946528 ttgtatttttaacaaaacttaaagaccaggatattcaaccaagtatgtacacgtacaatattcttatc 29946595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 24890402 - 24890300
Alignment:
18 taatggattttgcaaggttaaaatgatagatgaagccataaatctctatgaagaaatgcattgtagaaaaaatattcctgatgtggtaacttacagttcc 117  Q
    |||||||||||| ||| |||||||| | ||||||||||||||||||| ||||||||||| ||||||||||| ||||||| ||||||||||||||||||||    
24890402 taatggattttgtaagattaaaatggtggatgaagccataaatctctttgaagaaatgcgttgtagaaaaattattcctaatgtggtaacttacagttcc 24890303  T
118 ctt 120  Q
    |||    
24890302 ctt 24890300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 130 - 283
Target Start/End: Complemental strand, 29348594 - 29348440
Alignment:
130 atgcatgatagaggtcagccacctgatataattacttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaattgcattattaa 228  Q
    |||||||||||||||   |||| ||||| ||||||||||||||||||||| |||||||| || ||||||||||| ||||||||||||||||| || ||||    
29348594 atgcatgatagaggtgtaccacatgataaaattacttacaattctatattggatgctttatgcaaaaaccatcaggttgacaaggcaattgcgttgttaa 29348495  T
229 caaaattgaaagaccagggtattcgaccagatatgtacacatacactatttttat 283  Q
    | ||  |||||||  | || |||| ||||||||||||||||||||||||| ||||    
29348494 cgaagatgaaagatgaaggaattcaaccagatatgtacacatacactattcttat 29348440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 130 - 283
Target Start/End: Original strand, 29085021 - 29085175
Alignment:
130 atgcatgatagaggtcagccacctgatataattacttacaattctatattagatgctttgtgaaaaacc-atcatgttgacaaggcaattgcattattaa 228  Q
    |||||||||||||||   |||||| ||||| ||||||||||||||||| |||||||||| |  |||||| |||| |||||||| |||||||||||  |||    
29085021 atgcatgatagaggtgtaccacctaatatacttacttacaattctataatagatgctttattcaaaacccatcaagttgacaaagcaattgcattgataa 29085120  T
229 caaaattgaaagaccagggtattcgaccagatatgtacacatacactatttttat 283  Q
    | ||||| |||||||||||||||| ||||   |||||||||||||||||| ||||    
29085121 cgaaatttaaagaccagggtattcaaccaagcatgtacacatacactattcttat 29085175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 130 - 296
Target Start/End: Original strand, 29889733 - 29889900
Alignment:
130 atgcatgatagaggtcagccacctgatataattacttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaattgcattattaa 228  Q
    |||||||||||||||   |||||| ||||| | |||||||||||||||||||||||||| || |||| |||||| ||||||||  |||||||||| | ||    
29889733 atgcatgatagaggtgtaccacctaatatagtcacttacaattctatattagatgctttatgcaaaacccatcaggttgacaaaacaattgcattgtcaa 29889832  T
229 caaaattgaaagaccagggtattcgaccagatatgtacacatacactatttttatcaagggattgtgc 296  Q
    | ||||| ||||||||| |||||| |||| || |||| |||||||||||| ||||  | |||||||||    
29889833 cgaaatttaaagaccagagtattcaaccaaatgtgtaaacatacactattcttattgatggattgtgc 29889900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 204 - 299
Target Start/End: Original strand, 29912050 - 29912145
Alignment:
204 gttgacaaggcaattgcattattaacaaaattgaaagaccagggtattcgaccagatatgtacacatacactatttttatcaagggattgtgccaa 299  Q
    |||||||| |||||| ||||||||||||||||||||| ||| |||||||||||||||||| |||||||||| ||| || |||||||||||||||||    
29912050 gttgacaaagcaattacattattaacaaaattgaaaggccaaggtattcgaccagatatgaacacatacaccattcttgtcaagggattgtgccaa 29912145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 130 - 283
Target Start/End: Original strand, 25451121 - 25451275
Alignment:
130 atgcatgatagaggtcagccacctgatataattacttacaattctatattagatgctttgt-gaaaaaccatcatgttgacaaggcaattgcattattaa 228  Q
    ||||||||||||||||| |||||  ||||| ||||||||| ||||||||| |||||||| | |||||| ||||| |||||  | ||||||| |||||| |    
25451121 atgcatgatagaggtcaaccaccaaatatatttacttacagttctatattggatgctttattgaaaaaacatcaggttgaagaagcaattgaattattta 25451220  T
229 caaaattgaaagaccagggtattcgaccagatatgtacacatacactatttttat 283  Q
     | |||| |||||| ||||||||| |||| || ||||||||||||||||||||||    
25451221 aagaatttaaagacaagggtattcaaccaaatgtgtacacatacactatttttat 25451275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 29887140 - 29887242
Alignment:
18 taatggattttgcaaggttaaaatgatagatgaagccataaatctctatgaagaaatgcattgtagaaaaaatattcctgatgtggtaacttacagttcc 117  Q
    |||||||||||| ||| |||||||||  ||||||||||| ||||||| ||||||||||||||||||||||   |||||||||||||||||||||| ||||    
29887140 taatggattttgtaagattaaaatgaccgatgaagccatgaatctctttgaagaaatgcattgtagaaaactaattcctgatgtggtaacttacaattcc 29887239  T
118 ctt 120  Q
    |||    
29887240 ctt 29887242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 130 - 294
Target Start/End: Original strand, 29876828 - 29876993
Alignment:
130 atgcatgatagaggtcagccacctgatataattacttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaattgcattattaa 228  Q
    |||||||||||||| || |||||| |||||||||||||||||||||||||  ||||||| || ||||  ||||||||||| ||| | |||||||||||||    
29876828 atgcatgatagaggccaaccacctaatataattacttacaattctatattgtatgctttatgcaaaattcatcatgttgagaagacgattgcattattaa 29876927  T
229 caaaattgaaagaccagggtattcgaccagatatgtacacatacactatttttatcaagggattgt 294  Q
     |||| | ||||   ||||||||| |||||||  |||||| ||||||||| ||| ||| |||||||    
29876928 gaaaaattaaagtgaagggtattcaaccagatgcgtacacgtacactattcttaccaatggattgt 29876993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 29905482 - 29905590
Alignment:
18 taatggattttgcaaggttaaaatgatagatgaagccataaatctctatgaagaaatgcattgtagaaaaaatattcctgatgtggtaacttacagttcc 117  Q
    |||||| ||||| ||| |||||| | | ||||||||||||||||||| ||||||||||||||||||||||   |||||||||||||||||||||| ||||    
29905482 taatgggttttgtaagattaaaaaggttgatgaagccataaatctctttgaagaaatgcattgtagaaaattaattcctgatgtggtaacttacaattcc 29905581  T
118 cttgtcgat 126  Q
    ||| |||||    
29905582 cttatcgat 29905590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 30118897 - 30118789
Alignment:
18 taatggattttgcaaggttaaaatgatagatgaagccataaatctctatgaagaaatgcattgtagaaaaaatattcctgatgtggtaacttacagttcc 117  Q
    |||||| ||||| ||| |||||| | | ||||||||||||||||||| ||||||||||||||||||||||   |||||||||||||||||||||| ||||    
30118897 taatgggttttgtaagattaaaaaggtcgatgaagccataaatctctttgaagaaatgcattgtagaaaattaattcctgatgtggtaacttacaattcc 30118798  T
118 cttgtcgat 126  Q
    ||| |||||    
30118797 cttatcgat 30118789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 29835066 - 29835160
Alignment:
26 tttgcaaggttaaaatgatagatgaagccataaatctctatgaagaaatgcattgtagaaaaaatattcctgatgtggtaacttacagttccctt 120  Q
    |||| ||| |||||||||  ||||||||||| ||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||    
29835066 tttgtaagattaaaatgacggatgaagccatgaatctctttgaagaaatgcattgcagaaaaattattcctgatgtggtaacttacaattccctt 29835160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 29866500 - 29866594
Alignment:
26 tttgcaaggttaaaatgatagatgaagccataaatctctatgaagaaatgcattgtagaaaaaatattcctgatgtggtaacttacagttccctt 120  Q
    |||| ||| |||||||||  ||||||||||| ||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||    
29866500 tttgtaagattaaaatgacggatgaagccatgaatctctttgaagaaatgcattgcagaaaaattattcctgatgtggtaacttacaattccctt 29866594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 31000094 - 30999992
Alignment:
18 taatggattttgcaaggttaaaatgatagatgaagccataaatctctatgaagaaatgcattgtagaaaaaatattcctgatgtggtaacttacagttcc 117  Q
    |||||||||||||||| |||||||| | ||||||||||||||||||| ||||||||||| ||||||||||| ||||| | ||||| ||| |||||||| |    
31000094 taatggattttgcaagattaaaatggtggatgaagccataaatctctttgaagaaatgcgttgtagaaaaattattcgtaatgtgttaatttacagtttc 30999995  T
118 ctt 120  Q
    |||    
30999994 ctt 30999992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 28926703 - 28926595
Alignment:
18 taatggattttgcaaggttaaaatgatagatgaagccataaatctctatgaagaaatgcattgtagaaaaaatattcctgatgtggtaacttacagttcc 117  Q
    |||||| ||||| ||| |||||||||  |||| |||||| ||||||| ||||||||||||||| ||||||| ||||||| ||||||||||||||| ||||    
28926703 taatgggttttgtaagattaaaatgaccgatgcagccatgaatctctttgaagaaatgcattgcagaaaaattattcctaatgtggtaacttacaattcc 28926604  T
118 cttgtcgat 126  Q
    ||| |||||    
28926603 cttatcgat 28926595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 24730698 - 24730800
Alignment:
18 taatggattttgcaaggttaaaatgatagatgaagccataaatctctatgaagaaatgcattgtagaaaaaatattcctgatgtggtaacttacagttcc 117  Q
    ||||||||| || ||| |||||||| | ||||||||  ||||||||| ||||||||||| ||||||||||| ||||||| ||||||||||||||| ||||    
24730698 taatggattatgtaagattaaaatggtggatgaagctgtaaatctctttgaagaaatgcgttgtagaaaaattattcctaatgtggtaacttacaattcc 24730797  T
118 ctt 120  Q
    |||    
24730798 ctt 24730800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 130 - 262
Target Start/End: Complemental strand, 29366417 - 29366284
Alignment:
130 atgcatgatagaggtcagccacctgatataattacttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaattgcattattaa 228  Q
    |||||||||||||||   |||| ||||| ||||||||||||||||||||| |||||||| || ||||||||||| ||||||||||||||||| || ||||    
29366417 atgcatgatagaggtgtaccacatgataaaattacttacaattctatattggatgctttatgcaaaaaccatcaggttgacaaggcaattgcgttgttaa 29366318  T
229 caaaattgaaagaccagggtattcgaccagatat 262  Q
    | ||  |||||||  | || |||| |||||||||    
29366317 cgaagatgaaagatgaaggaattcaaccagatat 29366284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 204 - 297
Target Start/End: Original strand, 29914070 - 29914163
Alignment:
204 gttgacaaggcaattgcattattaacaaaattgaaagaccagggtattcgaccagatatgtacacatacactatttttatcaagggattgtgcc 297  Q
    |||||||| ||||||||||| ||||| ||||| |||||||||||||||| ||||  | ||||||||||||||||| || |||||||||||||||    
29914070 gttgacaaagcaattgcattgttaacgaaatttaaagaccagggtattcaaccaagtgtgtacacatacactattcttgtcaagggattgtgcc 29914163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 277
Target Start/End: Original strand, 30149530 - 30149678
Alignment:
130 atgcatgatagaggtcagccacctgatataattacttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaattgcattattaa 228  Q
    ||||||||||||||||| ||| | || ||||| |||||||||||| |||| ||||  ||||| ||||||||||| ||||||| |||||||||||||||||    
30149530 atgcatgatagaggtcaaccaaccgacataatcacttacaattctttatttgatggattgtgcaaaaaccatcaggttgacagggcaattgcattattaa 30149629  T
229 caaaattgaaagaccagggtattcgaccagatatgtacacatacactat 277  Q
     |||  | ||||||||||| ||||  |||  ||||||  ||||||||||    
30149630 aaaagatcaaagaccagggaattcagccaagtatgtattcatacactat 30149678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 225
Target Start/End: Complemental strand, 30999934 - 30999838
Alignment:
130 atgcatgatagaggtcagccacctgatataattacttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaattgcattat 225  Q
    ||||||||||||||||| |||||| ||||| ||| ||||| ||||||||| |||||||| || |||||||||| ||||||| |||||||||||||||    
30999934 atgcatgatagaggtcaaccacctaatatagttatttacagttctatattggatgctttatgcaaaaaccatcgtgttgaccaggcaattgcattat 30999838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 163 - 277
Target Start/End: Complemental strand, 29949860 - 29949745
Alignment:
163 acttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaattgcattattaacaaaattgaaagaccagggtattcgaccagata 261  Q
    |||||||||||| ||||||||||||| || ||||||||||| ||||||||||| ||||||||||||| |||  | |||||||| || ||||  ||| |||    
29949860 acttacaattctttattagatgctttatgcaaaaaccatcaggttgacaaggcgattgcattattaaaaaagataaaagaccaaggaattcagccaaata 29949761  T
262 tgtacacatacactat 277  Q
    |||| |||||||||||    
29949760 tgtatacatacactat 29949745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 163 - 277
Target Start/End: Complemental strand, 29953657 - 29953542
Alignment:
163 acttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaattgcattattaacaaaattgaaagaccagggtattcgaccagata 261  Q
    |||||||||||| |||| ||||||||||| ||||||||||| ||||||||||| |||||||||||||  ||  |||||||||| || ||||  ||| |||    
29953657 acttacaattctttattggatgctttgtgcaaaaaccatcaggttgacaaggcgattgcattattaaagaagatgaaagaccaagggattcagccaaata 29953558  T
262 tgtacacatacactat 277  Q
    |||| |||||||||||    
29953557 tgtatacatacactat 29953542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 29946280 - 29946382
Alignment:
18 taatggattttgcaaggttaaaatgatagatgaagccataaatctctatgaagaaatgcattgtagaaaaaatattcctgatgtggtaacttacagttcc 117  Q
    |||||||||||| ||| |||||||| | ||||||||||| ||||||| ||||||||||||||| | | ||| | ||||| ||||||||||||||| ||||    
29946280 taatggattttgtaagattaaaatggtggatgaagccatgaatctctttgaagaaatgcattgcaaacaaatttttcctaatgtggtaacttacaattcc 29946379  T
118 ctt 120  Q
    |||    
29946380 ctt 29946382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 29897920 - 29898028
Alignment:
18 taatggattttgcaaggttaaaatgatagatgaagccataaatctctatgaagaaatgcattgtagaaaaaatattcctgatgtggtaacttacagttcc 117  Q
    |||||| ||||| |||  ||||||||  ||||||||||| ||||||| |||||||||||||||||||||    |||||||||||||||||||||| |||     
29897920 taatgggttttgtaagagtaaaatgaccgatgaagccatgaatctctttgaagaaatgcattgtagaaagctaattcctgatgtggtaacttacaattct 29898019  T
118 cttgtcgat 126  Q
    ||| |||||    
29898020 cttatcgat 29898028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 130 - 217
Target Start/End: Original strand, 29898080 - 29898168
Alignment:
130 atgcatgatagaggtcagccacctgatataattacttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaat 217  Q
    ||||||||||||||||| |||||| |||||||||| |||| |||||||||  ||||||| || ||||||||||| ||||||||||||||    
29898080 atgcatgatagaggtcaaccacctaatataattacgtacagttctatattgaatgctttatgcaaaaaccatcaggttgacaaggcaat 29898168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 30060318 - 30060216
Alignment:
18 taatggattttgcaaggttaaaatgatagatgaagccataaatctctatgaagaaatgcattgtagaaaaaatattcctgatgtggtaacttacagttcc 117  Q
    |||||| ||||| ||| |||||| | | ||||||||||| ||||||| ||||||||||||||| | ||| | |||||||||||||||||| |||| ||||    
30060318 taatgggttttgtaagattaaaaaggtcgatgaagccatgaatctctttgaagaaatgcattgcaaaaacattattcctgatgtggtaacatacaattcc 30060219  T
118 ctt 120  Q
    |||    
30060218 ctt 30060216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 30127211 - 30127109
Alignment:
18 taatggattttgcaaggttaaaatgatagatgaagccataaatctctatgaagaaatgcattgtagaaaaaatattcctgatgtggtaacttacagttcc 117  Q
    |||||| ||||| ||| |||||| | | | ||||||||| ||||||| |||||||||||| || | ||||| ||||||||||||||||||||| ||||||    
30127211 taatgggttttgtaagattaaaagggtgggtgaagccattaatctctttgaagaaatgcaatgcaaaaaaattattcctgatgtggtaacttatagttcc 30127112  T
118 ctt 120  Q
    |||    
30127111 ctt 30127109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 25 - 120
Target Start/End: Complemental strand, 29348747 - 29348652
Alignment:
25 ttttgcaaggttaaaatgatagatgaagccataaatctctatgaagaaatgcattgtagaaaaaatattcctgatgtggtaacttacagttccctt 120  Q
    ||||| ||| |||||| | | ||||||||||| ||||||| | ||||||||||||| | ||| | ||||||||||||||||||||||| |||||||    
29348747 ttttgtaagattaaaaaggttgatgaagccatgaatctctttaaagaaatgcattgcaaaaacattattcctgatgtggtaacttacaattccctt 29348652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 158 - 271
Target Start/End: Complemental strand, 16702123 - 16702009
Alignment:
158 taattacttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaattgcattattaacaaaattgaaagaccagggtattcgacc 256  Q
    |||| |||||||||||  ||||| ||||||| || ||||||||||||||||||||||||||||||||  | |  || || |||||||| || |||| |||    
16702123 taatcacttacaattccttattacatgctttatgtaaaaaccatcatgttgacaaggcaattgcattggtcaacaattttaaagaccaaggcattcaacc 16702024  T
257 agatatgtacacata 271  Q
    ||||||| |||||||    
16702023 agatatgcacacata 16702009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 142 - 274
Target Start/End: Original strand, 30053442 - 30053575
Alignment:
142 ggtcagccacctgatataattacttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaattgcattattaacaaaattgaaag 240  Q
    ||||| ||| || ||||||| |||||||||||| ||||| |||  ||||| ||||||||||| ||||||||||||||||| || ||||| ||  ||||||    
30053442 ggtcaaccagctaatataatcacttacaattctttattatatggattgtgcaaaaaccatcaggttgacaaggcaattgcgttgttaacgaagatgaaag 30053541  T
241 accagggtattcgaccagatatgtacacatacac 274  Q
    || | || ||||  ||||||||||  ||||||||    
30053542 acgaaggaattcagccagatatgtttacatacac 30053575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 232 - 296
Target Start/End: Complemental strand, 24271857 - 24271793
Alignment:
232 aattgaaagaccagggtattcgaccagatatgtacacatacactatttttatcaagggattgtgc 296  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||| ||||  | |||||||||    
24271857 aattgaaagaccagggtattcgaccaaatatgttcacatacactattcttattgatggattgtgc 24271793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 120
Target Start/End: Original strand, 29099193 - 29099288
Alignment:
25 ttttgcaaggttaaaatgatagatgaagccataaatctctatgaagaaatgcattgtagaaaaaatattcctgatgtggtaacttacagttccctt 120  Q
    ||||| ||| |||||| | | ||||||||||| ||||||| | ||||||||||| | | ||| | |||||||||||| ||||||||||||||||||    
29099193 ttttgtaagattaaaaagtttgatgaagccatgaatctctttaaagaaatgcatcgcaaaaacattattcctgatgtcgtaacttacagttccctt 29099288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 120
Target Start/End: Original strand, 29116111 - 29116206
Alignment:
25 ttttgcaaggttaaaatgatagatgaagccataaatctctatgaagaaatgcattgtagaaaaaatattcctgatgtggtaacttacagttccctt 120  Q
    ||||| ||| |||||| | | ||||||||||| ||||||| | ||||||||||| | | ||| | |||||||||||| ||||||||||||||||||    
29116111 ttttgtaagattaaaaagtttgatgaagccatgaatctctttaaagaaatgcatcgcaaaaacattattcctgatgtcgtaacttacagttccctt 29116206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #59
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 120
Target Start/End: Complemental strand, 29366570 - 29366475
Alignment:
25 ttttgcaaggttaaaatgatagatgaagccataaatctctatgaagaaatgcattgtagaaaaaatattcctgatgtggtaacttacagttccctt 120  Q
    ||||| ||| |||||| | | ||||||||||| ||||||| | ||||||||||||| |  || | ||||||||||||||||||||||| |||||||    
29366570 ttttgtaagattaaaaaggtcgatgaagccatgaatctctttaaagaaatgcattgcaataacattattcctgatgtggtaacttacaattccctt 29366475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #60
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 219
Target Start/End: Complemental strand, 24271943 - 24271853
Alignment:
130 atgcatgatagaggtcagccacctgatataattacttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaattg 219  Q
    ||||||||| |||| || | |||||||||||| || |||| ||||||||| |||| ||| || ||||||||||| ||||||||||||||||    
24271943 atgcatgatcgagggcaacaacctgatataatcacgtacagttctatattggatgatttatgcaaaaaccatcaggttgacaaggcaattg 24271853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #61
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 29876668 - 29876770
Alignment:
18 taatggattttgcaaggttaaaatgatagatgaagccataaatctctatgaagaaatgcattgtagaaaaaatattcctgatgtggtaacttacagttcc 117  Q
    |||||||||||| |||||||||||||| |||||||| || |||||||   ||||||||||||||| | |||  |||||||||  | || |||| ||||||    
29876668 taatggattttgtaaggttaaaatgatggatgaagcaatgaatctcttccaagaaatgcattgtaaagaaataattcctgatacgatagcttatagttcc 29876767  T
118 ctt 120  Q
    |||    
29876768 ctt 29876770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #62
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 274
Target Start/End: Original strand, 30135128 - 30135274
Alignment:
130 atgcatgatagaggtcagccacctgatataattacttacaattctatattagatgctttgtg-aaaaaccatcatg-ttgacaaggcaattgcattatta 227  Q
    |||||||| |||||||| ||  || || | || |||||||||||| |||| ||||||||||| ||||||||||| | |||||||||||||  ||||||||    
30135128 atgcatgaaagaggtcaacctgctaatgtgatcacttacaattctttattggatgctttgtgcaaaaaccatcaggtttgacaaggcaatcacattatta 30135227  T
228 acaaaattgaaagaccagggtattcgaccagatatgtacacatacac 274  Q
    || ||  | |||||||| |||||||  ||| || |||| ||||||||    
30135228 acgaagatcaaagaccaaggtattcagccaaatttgtatacatacac 30135274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #63
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 271
Target Start/End: Complemental strand, 15727152 - 15727043
Alignment:
163 acttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaattgcattattaacaaaattgaaagaccagggtattcgaccagata 261  Q
    |||||||||||  || |||||||||| || ||||||||||| |||||||||||||||| |||| | |  ||| | ||||||||||| |||| | ||||||    
15727152 acttacaattcgttaatagatgctttatgcaaaaaccatcacgttgacaaggcaattgtattagtcaagaaaatcaaagaccagggcattcaatcagata 15727053  T
262 tgtacacata 271  Q
    |||| |||||    
15727052 tgtatacata 15727043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #64
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 274
Target Start/End: Original strand, 24898080 - 24898225
Alignment:
130 atgcatgatagaggtcagccacctgatataattacttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaattgcattattaa 228  Q
    ||||||||||||||||| | | |||| ||||| | |||||  ||  |||| ||||| ||||  ||||||||||| ||||||||||||||||| ||||| |    
24898080 atgcatgatagaggtcaacaagctgacataatcatttacacctcgttattggatgcattgtttaaaaaccatcaagttgacaaggcaattgcgttattga 24898179  T
229 caaaattgaaagaccagggtattcgaccagatatgtacacatacac 274  Q
      ||  | ||||||| ||| |||  ||||||||||| |||||||||    
24898180 agaagatcaaagaccggggaattgaaccagatatgttcacatacac 24898225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #65
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 217
Target Start/End: Complemental strand, 24739191 - 24739103
Alignment:
130 atgcatgatagaggtcagccacctgatataattacttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaat 217  Q
    |||||| ||||||| || ||  ||||| | || |||||||||||  |||| ||||||||||| ||||||||||| ||||||||||||||    
24739191 atgcataatagaggccaacctgctgatgtgatcacttacaattccttattggatgctttgtgcaaaaaccatcaggttgacaaggcaat 24739103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #66
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 277
Target Start/End: Original strand, 24942239 - 24942351
Alignment:
166 tacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaattgcattattaacaaaattgaaagaccagggtattcgaccagatatgt 264  Q
    ||||||||  |||| ||||||||||  ||||||||||| ||||||||||||||| |||||||||  ||  | |||||||| || ||||  ||| ||||||    
24942239 tacaattccttattggatgctttgttcaaaaaccatcaggttgacaaggcaattacattattaatgaagatcaaagaccaaggaattcagccaaatatgt 24942338  T
265 acacatacactat 277  Q
    | || ||||||||    
24942339 atacttacactat 24942351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #67
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 122
Target Start/End: Original strand, 25450967 - 25451065
Alignment:
24 attttgcaaggttaaaatgatagatgaagccataaatctctatgaagaaatgcattgtagaaaaaata-ttcctgatgtggtaacttacagttcccttgt 122  Q
    |||||| ||| |||||||| | ||||||||||  || || | |||||||||||| |  | || ||||| |||||||||||||||||||||||||||||||    
25450967 attttgtaagattaaaatggtggatgaagccaggaaactttttgaagaaatgcagtcca-aacaaatatttcctgatgtggtaacttacagttcccttgt 25451065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #68
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 112
Target Start/End: Original strand, 29889601 - 29889667
Alignment:
46 gatgaagccataaatctctatgaagaaatgcattgtagaaaaaatattcctgatgtggtaacttaca 112  Q
    ||||||||||| ||||||| | ||||||||||||| | ||| | ||||||| ||||||| |||||||    
29889601 gatgaagccatgaatctctttaaagaaatgcattgcaaaaacattattcctaatgtggtgacttaca 29889667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #69
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 226
Target Start/End: Complemental strand, 21160621 - 21160524
Alignment:
130 atgcatgatagaggtcagccacctgatataattacttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaattgcattatt 226  Q
    |||||| ||||||| || ||  ||||| | || |||||||||||  |||| ||||||||||| ||||||||||| ||||||| ||||||  |||||||    
21160621 atgcataatagaggccaacctgctgatgtgatcacttacaattccttattggatgctttgtgcaaaaaccatcaggttgacatggcaatcacattatt 21160524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #70
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 30062109 - 30062049
Alignment:
60 tctctatgaagaaatgcattgtagaaaaaatattcctgatgtggtaacttacagttccctt 120  Q
    ||||| ||||||||||||||| | ||| | |||||| ||||||||| |||||| |||||||    
30062109 tctctttgaagaaatgcattgcaaaaacattattcccgatgtggtagcttacaattccctt 30062049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0573 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 130 - 283
Target Start/End: Original strand, 4140 - 4294
Alignment:
130 atgcatgatagaggtcagccacctgatataattacttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaattgcattattaa 228  Q
    ||||||||||||||||| |||||||||||||||||||||| |||| |||| |||||||| || ||||||||||  | |||||||||||||||||||||||    
4140 atgcatgatagaggtcaaccacctgatataattacttacagttctctattggatgctttatgcaaaaaccatccaggtgacaaggcaattgcattattaa 4239  T
229 caaaattgaaagaccagggtattcgaccagatatgtacacatacactatttttat 283  Q
    |||||||||||||||||||| ||| |||| |||||||||||||||||||| ||||    
4240 caaaattgaaagaccagggtcttcaaccaaatatgtacacatacactattcttat 4294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0573; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 3980 - 4088
Alignment:
18 taatggattttgcaaggttaaaatgatagatgaagccataaatctctatgaagaaatgcattgtagaaaaaatattcctgatgtggtaacttacagttcc 117  Q
    |||||| ||||| ||| |||||||||  |||| |||||| ||||||| ||||||||||||||| ||||||| ||||||| ||||||||||||||| ||||    
3980 taatgggttttgtaagattaaaatgaccgatgcagccatgaatctctttgaagaaatgcattgcagaaaaattattcctaatgtggtaacttacaattcc 4079  T
118 cttgtcgat 126  Q
    ||| |||||    
4080 cttatcgat 4088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 150 - 299
Target Start/End: Original strand, 22366 - 22516
Alignment:
150 acctgatataattacttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaattgcattattaacaaaattgaaagaccagggt 248  Q
    |||||||||||||||||||||||||||||| |||||||| || ||||| |||||||| ||||| |||||| ||||||||||||||||||||| ||| |||    
22366 acctgatataattacttacaattctatattggatgctttatgcaaaaaacatcatgtggacaaagcaattacattattaacaaaattgaaaggccaaggt 22465  T
249 attcgaccagatatgtacacatacactatttttatcaagggattgtgccaa 299  Q
    ||||||||||||||| |||||||||| ||| || |||||||||||||||||    
22466 attcgaccagatatgaacacatacaccattcttgtcaagggattgtgccaa 22516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 118 - 295
Target Start/End: Complemental strand, 15062884 - 15062706
Alignment:
118 cttgtcgatataatgcatgatagaggtcagccacctgatataattacttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaa 216  Q
    |||||||||  |||||||||||||||||| ||| || |||||||||||||||||||||||||||||||| | || |||||| |||||||||| |||||||    
15062884 cttgtcgatgaaatgcatgatagaggtcaaccatctaatataattacttacaattctatattagatgctatatgcaaaaacaatcatgttgataaggcaa 15062785  T
217 ttgcattattaacaaaattgaaagaccagggtattcgaccagatatgtacacatacactatttttatcaagggattgtg 295  Q
    |||  |||||||||||| | |||||  ||||||||| ||||||||| | ||| || ||| || |||| || ||||||||    
15062784 ttgtgttattaacaaaaattaaagagaagggtattcaaccagatattttcacgtatactgttcttattaatggattgtg 15062706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 15063032 - 15062928
Alignment:
18 taatggattttgcaaggttaaaatgatagatgaagccataaatctctatgaagaaatgcattgtagaaaaaatattcctgatgtggtaacttacagttcc 117  Q
    |||||||||||| ||| |||||||| ||||||||||||| || |||| ||||||||||||||||| | ||| | ||||  ||||||||||||||| ||||    
15063032 taatggattttgtaagattaaaatggtagatgaagccatgaagctctttgaagaaatgcattgtaaacaaatttttccaaatgtggtaacttacaattcc 15062933  T
118 cttgt 122  Q
    |||||    
15062932 cttgt 15062928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 9e-33; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 130 - 244
Target Start/End: Complemental strand, 24219231 - 24219116
Alignment:
130 atgcatgatagaggtcagccacctgatataattacttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaattgcattattaa 228  Q
    ||||||||||||||||| |||||| |||||||||||||||||||| |||| |||||||| || |||||||||||||||||||||||||||| ||| ||||    
24219231 atgcatgatagaggtcaaccacctaatataattacttacaattctttattggatgctttatgcaaaaaccatcatgttgacaaggcaattgaattgttaa 24219132  T
229 caaaattgaaagacca 244  Q
    ||||| | ||||||||    
24219131 caaaacttaaagacca 24219116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 217
Target Start/End: Original strand, 24226823 - 24226911
Alignment:
130 atgcatgatagaggtcagccacctgatataattacttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaat 217  Q
    ||||||||||||||||| ||| || | ||||| |||||||||||| |||||||||  ||||| ||||||||||| ||||||||||||||    
24226823 atgcatgatagaggtcaaccagctaacataatcacttacaattctttattagatggattgtgcaaaaaccatcaggttgacaaggcaat 24226911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 268
Target Start/End: Original strand, 11991314 - 11991454
Alignment:
129 aatgcatgatagaggtcagccacctgatataattacttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaattgcatta-tt 226  Q
    |||||||||||  ||||| ||| |  ||||| | |||||||| | | || |||||||||| || |||||||||||||||||| |||| ||||||||| ||    
11991314 aatgcatgataatggtcaaccagccaatatattcacttacaactgtttaatagatgctttatgtaaaaaccatcatgttgaccaggctattgcattagtt 11991413  T
227 aacaaaattgaaagaccagggtattcgaccagatatgtacac 268  Q
    || |||||| ||||| || || |||| |||||||||||||||    
11991414 aagaaaatt-aaagatcaaggcattcaaccagatatgtacac 11991454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 24219388 - 24219289
Alignment:
21 tggattttgcaaggttaaaatgatagatgaagccataaatctctatgaagaaatgcattgtagaaaaaatattcctgatgtggtaacttacagttccctt 120  Q
    ||||||||| ||| |||||||| | ||||||||||| || |||| ||||||||||||||| | | ||| | |||| |||||||| || |||| |||||||    
24219388 tggattttgtaagattaaaatggtggatgaagccatgaaactctttgaagaaatgcattgcaaacaaatttttcccgatgtggtgacgtacaattccctt 24219289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 273
Target Start/End: Original strand, 16351086 - 16351197
Alignment:
163 acttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaattgcatta-ttaacaaaattgaaagaccagggtattcgaccagat 260  Q
    |||||||||||| |  |||||| ||| || |||||||| |||||||||||||| ||||||||| |||| |||||| ||||| || || |||| |||| ||    
16351086 acttacaattctttgatagatgttttctgcaaaaaccaacatgttgacaaggctattgcattagttaagaaaatt-aaagaacatggcattcaaccaaat 16351184  T
261 atgtacacataca 273  Q
    |||| ||||||||    
16351185 atgtgcacataca 16351197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 112
Target Start/End: Original strand, 33997811 - 33997877
Alignment:
46 gatgaagccataaatctctatgaagaaatgcattgtagaaaaaatattcctgatgtggtaacttaca 112  Q
    ||||||||||| ||||||| | |||| |||||||| | ||| | || ||||||||||||||||||||    
33997811 gatgaagccatgaatctctttaaagagatgcattggaaaaagattaatcctgatgtggtaacttaca 33997877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0572 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0572
Description:

Target: scaffold0572; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 130 - 273
Target Start/End: Original strand, 3236 - 3380
Alignment:
130 atgcatgatagaggtcagccacctgatataattacttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaattgcatta-tta 227  Q
    |||| |||||| ||||| ||| |||||||||| |||||||||||  || |||||||||| || ||||||||||||||||||||||| ||||||||| | |    
3236 atgcgtgatagtggtcaaccagctgatataatcacttacaattcattaatagatgctttatgcaaaaaccatcatgttgacaaggctattgcattagtca 3335  T
228 acaaaattgaaagaccagggtattcgaccagatatgtacacataca 273  Q
    | |||||| |||||||| || |||| || |||||||||||||||||    
3336 agaaaatt-aaagaccaaggcattcaactagatatgtacacataca 3380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 53592 - 53534
Alignment:
130 atgcatgatagaggtcagccacctgatataattacttacaattctatattagatgcttt 188  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||    
53592 atgcatgatagaggtcaaccacctaatataattacttacaattctatattaaatgcttt 53534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 295
Target Start/End: Complemental strand, 53535 - 53462
Alignment:
222 ttattaacaaaattgaaagaccagggtattcgaccagatatgtacacatacactatttttatcaagggattgtg 295  Q
    |||||||||||| |||| ||||||||||||| |||| ||||| | ||| |||||||| ||||||||||| ||||    
53535 ttattaacaaaactgaaggaccagggtattcaaccaaatatgcatacagacactattcttatcaagggactgtg 53462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 273
Target Start/End: Original strand, 17251316 - 17251460
Alignment:
130 atgcatgatagaggtcagccacctgatataattacttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaattgcattattaa 228  Q
    ||||||||||||||||| |||||| || |||| ||||||| |||| |  ||||||||||||| |||| |||||| ||||| ||||||||||||||| |||    
17251316 atgcatgatagaggtcaaccacctaatgtaataacttacacttctttgatagatgctttgtgcaaaagccatcaagttgataaggcaattgcattactaa 17251415  T
229 caaaattgaaagaccagggtattcgaccagatatgtacacataca 273  Q
      ||| | ||||| || |||||||   || ||||||| |||||||    
17251416 agaaaattaaagatcaaggtattcaggcaaatatgtatacataca 17251460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 135 - 290
Target Start/End: Original strand, 10130145 - 10130301
Alignment:
135 tgatagaggtcagccacctgatataattacttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaattgcattattaacaaaa 233  Q
    |||||||||||| | |||| |||||||||||||||||||| ||||  ||||||| ||  |||| || ||||||||||| ||||| ||||| |||| ||||    
10130145 tgatagaggtcaacaacctaatataattacttacaattctttattgaatgctttatgccaaaatcaccatgttgacaaagcaatcgcattgttaagaaaa 10130244  T
234 ttgaaagaccagggtattcgaccagatatgtacacatacactatttttatcaaggga 290  Q
    || |||  ||| ||||||| ||||  | | |  ||||| |||||| |||||||||||    
10130245 tttaaaacccaaggtattcaaccaactttatgtacatatactattcttatcaaggga 10130301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 273
Target Start/End: Original strand, 19490253 - 19490397
Alignment:
130 atgcatgatagaggtcagccacctgatataattacttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaattgcattattaa 228  Q
    |||| |||||||||||||||||| ||| |||| ||||| |||||| ||||||||||||| || ||||  |||||    ||||||||||| |||||| |||    
19490253 atgcttgatagaggtcagccacccgatgtaataacttataattctttattagatgctttatgtaaaagtcatcaaaccgacaaggcaatagcattactaa 19490352  T
229 caaaattgaaagaccagggtattcgaccagatatgtacacataca 273  Q
      ||| ||||||| || ||||||| | ||||||| | ||||||||    
19490353 gcaaaatgaaagatcaaggtattcaagcagatatcttcacataca 19490397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 277
Target Start/End: Complemental strand, 44262556 - 44262441
Alignment:
163 acttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaattgcattattaacaaaattgaaagaccagggtattcgaccagata 261  Q
    |||||||||||  |||| ||||||||||| ||||||||||| ||||||||||||||  |||||||||| ||  | |||||||| || ||||  ||| |||    
44262556 acttacaattccttattggatgctttgtgcaaaaaccatcaggttgacaaggcaatcacattattaacgaagatcaaagaccaaggaattcagccaaata 44262457  T
262 tgtacacatacactat 277  Q
    |||| || ||||||||    
44262456 tgtatacttacactat 44262441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 176 - 277
Target Start/End: Original strand, 9782588 - 9782690
Alignment:
176 tattagatgctttgtgaaaaa-ccatcatgttgacaaggcaattgcattattaacaaaattgaaagaccagggtattcgaccagatatgtacacatacac 274  Q
    |||| ||||||||||| |||| |||||| ||||||||||||||||| || ||||||||  |||||||| | || ||||  ||||||||||  ||||||||    
9782588 tattggatgctttgtgcaaaatccatcaggttgacaaggcaattgcgttgttaacaaagatgaaagacgaaggaattcagccagatatgtgtacatacac 9782687  T
275 tat 277  Q
    |||    
9782688 tat 9782690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0429 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0429
Description:

Target: scaffold0429; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 273
Target Start/End: Original strand, 6211 - 6343
Alignment:
142 ggtcagccacctgatataattacttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaattgcatta-ttaacaaaattgaaa 239  Q
    ||||| |||||||| |||   |||||||||||| || ||||||| || || ||||||||||||||||||||||| |||| |||| | || |||||| |||    
6211 ggtcaaccacctgacatatgcacttacaattctttaatagatgcattatgcaaaaaccatcatgttgacaaggctattgtattagtcaagaaaatt-aaa 6309  T
240 gaccagggtattcgaccagatatgtacacataca 273  Q
    ||||| || |||| || | |||||||||||||||    
6310 gaccaaggcattcaactaaatatgtacacataca 6343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 273
Target Start/End: Original strand, 137389 - 137521
Alignment:
142 ggtcagccacctgatataattacttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaattgcattatt-aacaaaattgaaa 239  Q
    ||||| |||||||| ||| |||| |||| |||| || |||||||||| || |||||| ||||| ||||||| || ||||||||| | || |||||| |||    
137389 ggtcaaccacctgacatatttacctacagttctttaatagatgctttatgcaaaaacaatcatcttgacaaagctattgcattagtcaagaaaatt-aaa 137487  T
240 gaccagggtattcgaccagatatgtacacataca 273  Q
    ||||| || |||| |||| |||||||||||||||    
137488 gaccaaggcattcaaccaaatatgtacacataca 137521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 273
Target Start/End: Complemental strand, 104722 - 104590
Alignment:
142 ggtcagccacctgatataattacttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaattgcattatt-aacaaaattgaaa 239  Q
    ||||| |||||| | ||| ||||||||| |||| || |||||||||| || |||||| ||||| ||||||| || ||  ||||| | || |||||| |||    
104722 ggtcaaccacctaacatatttacttacagttctttaatagatgctttatgcaaaaacaatcatcttgacaaagctatgacattagtcaagaaaatt-aaa 104624  T
240 gaccagggtattcgaccagatatgtacacataca 273  Q
    ||||| || |||| ||||||||||||||||||||    
104623 gaccaaggcattcaaccagatatgtacacataca 104590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 163 - 273
Target Start/End: Original strand, 3643073 - 3643184
Alignment:
163 acttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaattgcatta-ttaacaaaattgaaagaccagggtattcgaccagat 260  Q
    |||||||||||| |  |||||| ||| || |||||||||||| ||||||| || ||||||||| |||| |||||| ||||||||||| |||| ||||  |    
3643073 acttacaattctttgatagatgttttatgcaaaaaccatcatattgacaaagctattgcattagttaagaaaatt-aaagaccagggcattcaaccaagt 3643171  T
261 atgtacacataca 273  Q
    |||||||||||||    
3643172 atgtacacataca 3643184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 226
Target Start/End: Original strand, 8651267 - 8651365
Alignment:
129 aatgcatgatagaggtcagccacctgatataattacttacaattctatattagatgctttg-tgaaaaaccatcatgttgacaaggcaattgcattatt 226  Q
    ||||||||||||| |||| | | |||| ||||| ||||||| |||| |||| ||||| ||| | ||||||||| | ||| ||| |||||||||||||||    
8651267 aatgcatgatagatgtcaacaagctgacataatcacttacacttctttatttgatgcattgttcaaaaaccataaggtttacatggcaattgcattatt 8651365  T

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Target: scaffold0110 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 217
Target Start/End: Complemental strand, 43865 - 43777
Alignment:
130 atgcatgatagaggtcagccacctgatataattacttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaat 217  Q
    ||||||||||||||||| ||| |  | || || ||||||| |||| |||||||||  ||||| ||||||||||| ||||||||||||||    
43865 atgcatgatagaggtcaaccagcgaacattatcacttacagttctttattagatggattgtgcaaaaaccatcaggttgacaaggcaat 43777  T

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Target: scaffold0019 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 273
Target Start/End: Complemental strand, 126086 - 125975
Alignment:
163 acttacaattctatattagatgctttgtg-aaaaaccatcatgttgacaaggcaattgcatta-ttaacaaaattgaaagaccagggtattcgaccagat 260  Q
    |||||||||||  || |||||||||| || |||||||||||  |||||||||| ||||||||| |||| |||| | ||||| || || |||| |||||||    
126086 acttacaattccttaatagatgctttatgcaaaaaccatcagattgacaaggctattgcattagttaagaaaa-tcaaagatcaaggcattcaaccagat 125988  T
261 atgtacacataca 273  Q
    |||| ||||||||    
125987 atgtgcacataca 125975  T

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