View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18885_low_11 (Length: 240)
Name: NF18885_low_11
Description: NF18885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18885_low_11 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 5 - 240
Target Start/End: Complemental strand, 160814 - 160579
Alignment:
| Q |
5 |
caattacgccactcacataataatannnnnnngtctgattcttatccaaaacaaacttcgtttcaagtgatgacgatttctgagtgtcgtagaatgcaaa |
104 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
160814 |
caattacgccactcacataataatatttttttgtctgattcttatccaaaacaaacttcgtttcaagtgatgacgatttctgagtgtcgtagaatgcaaa |
160715 |
T |
|
| Q |
105 |
atactcgagtgcaagatcaagaaaatcttcatgatttggttttttgtcgtcgttcgggacgacagtgtcataaagatgcttcaatacnnnnnnnggtatc |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
160714 |
atactcgagtgcaagatcaagaaaatcttcatgatttggttttttgtcgtcgttcgggacgacagtgtcataaagatgcttcaatacaaaaaaaggtatc |
160615 |
T |
|
| Q |
205 |
tgattttccaacaaaatcaagtcccttgtgatgctt |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
160614 |
tgattttccaacaaaatcaagtcccttgtgatgctt |
160579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 64 - 240
Target Start/End: Complemental strand, 152320 - 152144
Alignment:
| Q |
64 |
gtttcaagtgatgacgatttctgagtgtcgtagaatgcaaaatactcgagtgcaagatcaagaaaatcttcatgatttggttttttgtcgtcgttcggga |
163 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||| ||||| | |||| | | |||||||||| |||| |||| |
|
|
| T |
152320 |
gtttcaagtgatgccgatttctgagtgtcatagaatgcaaaatactcaagtgcaagatcatgaaaacttgcatggtcttcttttttgtcgccgttaggga |
152221 |
T |
|
| Q |
164 |
cgacagtgtcataaagatgcttcaatacnnnnnnnggtatctgattttccaacaaaatcaagtcccttgtgatgctt |
240 |
Q |
| |
|
||||||| | ||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
152220 |
cgacagtttggtaaagatccatcaatacaaaaaatggtatctgattttccaacaaaatcaagtcccttgtgatgctt |
152144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University