View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18885_low_2 (Length: 439)
Name: NF18885_low_2
Description: NF18885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18885_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 7 - 433
Target Start/End: Complemental strand, 39108871 - 39108446
Alignment:
| Q |
7 |
gaatcttctcaaatagagcaaagatcttgctttcatctctagggcttgatctgaacttggagaaatagctaaagctgagtctagaagacttatagctgaa |
106 |
Q |
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| T |
39108871 |
gaatcttctcaaatagagcaaagatcttgctttcatctctagggcttgatctgaacttggagaaatagctaaagctgagtctagaagacttatagctgaa |
39108772 |
T |
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| Q |
107 |
acaatctcgtttcgttcttgtgttgcaatgagtgttcttgcatctttgatatatttctcaacaatctatnnnnnnnnnnnnnnnnnntattcagacatgt |
206 |
Q |
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| T |
39108771 |
acaatctcgtttcgttcttgtgttgcaatgagtgttcttgcatctttgatatatttctcaacaatctat-aaaacaaaaacaaaaaatattcagacatgt |
39108673 |
T |
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| Q |
207 |
tttgagaatgaaaaaacaaaacaagaatttaaggtgaaatatttagaggtttactttacggtttgtgagccaccagcgttgttttttctctgttgaattg |
306 |
Q |
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| T |
39108672 |
tttgagaatgaaaaaacaaaacaagaatttaaggtgaaatatttagaggtttaccttacggtttgtgagccaccagtgttgttttttctctgttgaattc |
39108573 |
T |
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| Q |
307 |
agaaaggaagttgtgacagccannnnnnnnnnnnggttgaaaatggtgatgtgagtgaagaagattcaaggttgaatcatgaaaatatcaaaacagaaca |
406 |
Q |
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| T |
39108572 |
agaaaggaagttgtgacagccatttttgttttttggttgaaaatggtgatgtgattgaagaagattcaaggttgaatcatgaaaatatcaaaacagaaca |
39108473 |
T |
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| Q |
407 |
ctatttgaggttttggtttcatctctc |
433 |
Q |
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| T |
39108472 |
ctatttgaggttttggtttcttctctc |
39108446 |
T |
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