View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18885_low_7 (Length: 272)
Name: NF18885_low_7
Description: NF18885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18885_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 266
Target Start/End: Complemental strand, 37191433 - 37191179
Alignment:
| Q |
17 |
aataggtagtacctttatttatcctggaccggttcagcatatatgaatgtgactacaaaatgcaaaggaatatataggtaatgtactatatgcctaatgt |
116 |
Q |
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| T |
37191433 |
aataggtagtacctttatttatcctggaccggttcagcatatatgagtgtgactacaaaatgcaaaagaatatataggtaatgtactatatgcctaatgt |
37191334 |
T |
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| Q |
117 |
atcagtgggacaattggtttatactataagcaagcctgaattaattaatataattagttaagtgaaataacaattatacttatccttgatagttccgtca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37191333 |
atcagtgggacaattggtttatactataagcaagcctgaattaattaatataattagttaagtgaaataacaattatacttatccttgatagttccgtca |
37191234 |
T |
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| Q |
217 |
aaaaataataatcatcc-----tatattcttttctatttctatggcaaagtctgt |
266 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
37191233 |
aaaaataataatcatcccagataatattcttttctatttctatggcaaagtctgt |
37191179 |
T |
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