View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18885_low_9 (Length: 249)

Name: NF18885_low_9
Description: NF18885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18885_low_9
NF18885_low_9
[»] chr2 (8 HSPs)
chr2 (88-237)||(19427813-19427960)
chr2 (88-162)||(19064272-19064346)
chr2 (1-56)||(19427661-19427716)
chr2 (88-162)||(8063031-8063105)
chr2 (91-159)||(42060943-42061011)
chr2 (88-133)||(13547995-13548040)
chr2 (1-49)||(19405238-19405286)
chr2 (88-120)||(42834129-42834161)
[»] chr8 (2 HSPs)
chr8 (160-237)||(37734170-37734247)
chr8 (88-138)||(25487546-25487596)
[»] chr4 (6 HSPs)
chr4 (88-143)||(37734992-37735047)
chr4 (88-162)||(37061978-37062052)
chr4 (88-159)||(26947163-26947234)
chr4 (88-144)||(41580310-41580366)
chr4 (88-162)||(36908386-36908461)
chr4 (88-145)||(43754812-43754869)
[»] chr3 (4 HSPs)
chr3 (88-155)||(34816649-34816716)
chr3 (88-137)||(51460163-51460212)
chr3 (88-144)||(37479408-37479464)
chr3 (88-127)||(26132063-26132102)
[»] chr1 (8 HSPs)
chr1 (88-143)||(5207614-5207669)
chr1 (88-144)||(41910051-41910107)
chr1 (88-162)||(24855131-24855205)
chr1 (88-127)||(7423302-7423341)
chr1 (88-138)||(11330955-11331005)
chr1 (88-138)||(11488976-11489026)
chr1 (90-120)||(22771399-22771429)
chr1 (90-120)||(23077193-23077223)
[»] chr7 (3 HSPs)
chr7 (88-162)||(44183977-44184051)
chr7 (88-136)||(22794849-22794897)
chr7 (88-136)||(37257634-37257682)
[»] chr6 (3 HSPs)
chr6 (88-143)||(19636455-19636510)
chr6 (88-159)||(13210254-13210325)
chr6 (88-120)||(19254991-19255023)
[»] chr5 (2 HSPs)
chr5 (88-162)||(24229427-24229501)
chr5 (100-145)||(9035377-9035422)


Alignment Details
Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 88 - 237
Target Start/End: Original strand, 19427813 - 19427960
Alignment:
Q  88 atcaaaacattctgaattgccacatcaattaatgattttattttatgtgggccaaacaagtcaattcaaaatgttgacatcaaatcgcaaccgtctatct 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  19427813 atcaaaacattctgaattgccacatcaattaatgattttattttatg--ggccaaacatggcaattcaaaatgttgacatcaaatcgcaaccgtctatct 19427910  T
Q  188 tttctaatctatggctaataatagtttttgaaattaactgatgtgagtat 237  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  19427911 tttctaatcaatggctaataatagtttttgaaattaactgatgtgagtat 19427960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 88 - 162
Target Start/End: Complemental strand, 19064346 - 19064272
Alignment:
Q  88 atcaaaacattctgaattgccacatcaattaatgattttattttatgtgggccaaacaagtcaattcaaaatgtt 162  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| | ||||||| ||||||    
T  19064346 atcaaaacattctgaattgccacatcaattaataattttaatttatgtgggccaaacatgacaattcagaatgtt 19064272  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 19427661 - 19427716
Alignment:
Q  1 aagttgatgtgagggtaaatatataaaaattcattagtttacctaatatttaaatg 56  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  19427661 aagttgatgtgagggtaaatatataaaaaatcattagtttacctaatatttaaatg 19427716  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 162
Target Start/End: Complemental strand, 8063105 - 8063031
Alignment:
Q  88 atcaaaacattctgaattgccacatcaattaatgattttattttatgtgggccaaacaagtcaattcaaaatgtt 162  Q
    ||||||||||||| ||||||||| | |||||||||||||| ||||||||| ||||||  | ||||| ||||||||    
T  8063105 atcaaaacattctaaattgccacgtaaattaatgattttaatttatgtggaccaaacgtggcaatttaaaatgtt 8063031  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 42061011 - 42060943
Alignment:
Q  91 aaaacattctgaattgccacatcaattaatg-attttattttatgtgggccaaacaagtcaattcaaaat 159  Q
    |||||||||||||||||||||||||||||||  ||||| || | |||||||||||| | |||||||||||    
T  42061011 aaaacattctgaattgccacatcaattaatgttttttaattaacgtgggccaaacatg-caattcaaaat 42060943  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 133
Target Start/End: Complemental strand, 13548040 - 13547995
Alignment:
Q  88 atcaaaacattctgaattgccacatcaattaatgattttattttat 133  Q
    ||||||| |||||||||| ||| || ||||||||||||||||||||    
T  13548040 atcaaaatattctgaattaccatattaattaatgattttattttat 13547995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 19405238 - 19405286
Alignment:
Q  1 aagttgatgtgagggtaaatatataaaaattcattagtttacctaatat 49  Q
    |||||||||| |||||||||||||| ||| ||| |||||||| ||||||    
T  19405238 aagttgatgtcagggtaaatatatacaaaatcagtagtttacgtaatat 19405286  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 120
Target Start/End: Original strand, 42834129 - 42834161
Alignment:
Q  88 atcaaaacattctgaattgccacatcaattaat 120  Q
    ||||||||||||||||| |||||||||||||||    
T  42834129 atcaaaacattctgaatcgccacatcaattaat 42834161  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 160 - 237
Target Start/End: Complemental strand, 37734247 - 37734170
Alignment:
Q  160 gttgacatcaaatcgcaaccgtctatcttttctaatctatggctaataatagtttttgaaattaactgatgtgagtat 237  Q
    ||||||| |||||| |||||||| ||||||||||||| || |||||||||||||||| ||||||||| ||||||||||    
T  37734247 gttgacaccaaatctcaaccgtccatcttttctaatcaattgctaataatagtttttaaaattaactcatgtgagtat 37734170  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 25487596 - 25487546
Alignment:
Q  88 atcaaaacattctgaattgccacatcaattaatgattttattttatgtggg 138  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  25487596 atcaaaacattctgaattgtcacatcaattaatgattttaatttatgtggg 25487546  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 88 - 143
Target Start/End: Complemental strand, 37735047 - 37734992
Alignment:
Q  88 atcaaaacattctgaattgccacatcaattaatgattttattttatgtgggccaaa 143  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  37735047 atcaaaacattctgaattgacacatcaattaatgattttaatttatgtgggccaaa 37734992  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 162
Target Start/End: Original strand, 37061978 - 37062052
Alignment:
Q  88 atcaaaacattctgaattgccacatcaattaatgattttattttatgtgggccaaacaagtcaattcaaaatgtt 162  Q
    |||||||||||  |||||| |||||||||||||||||||| |||||||||| |||||  | ||||||| ||||||    
T  37061978 atcaaaacatttagaattgtcacatcaattaatgattttaatttatgtgggtcaaacgtgacaattcagaatgtt 37062052  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 159
Target Start/End: Complemental strand, 26947234 - 26947163
Alignment:
Q  88 atcaaaacattctgaattgccacatcaattaatgattttattttatgtgggccaaacaagtcaattcaaaat 159  Q
    ||||||| ||| ||||| |||||||||||||||||||||| |||||||| | |||||| |  ||||||||||    
T  26947234 atcaaaatattttgaatcgccacatcaattaatgattttaatttatgtgagacaaacatgataattcaaaat 26947163  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 144
Target Start/End: Complemental strand, 41580366 - 41580310
Alignment:
Q  88 atcaaaacattctgaattgccacatcaattaatgattttattttatgtgggccaaac 144  Q
    ||||||||||||||||||| || |||||||||| ||| || |||||||||| |||||    
T  41580366 atcaaaacattctgaattgtcatatcaattaataattgtaatttatgtgggtcaaac 41580310  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 162
Target Start/End: Complemental strand, 36908461 - 36908386
Alignment:
Q  88 atcaaaacattctgaattgccacatcaattaatg-attttattttatgtgggccaaacaagtcaattcaaaatgtt 162  Q
    ||||||||||||||||||| ||||||||||||||  ||||| || | ||||||||||||   ||||||| ||||||    
T  36908461 atcaaaacattctgaattgtcacatcaattaatgttttttaattaacgtgggccaaacatagcaattcagaatgtt 36908386  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 145
Target Start/End: Original strand, 43754812 - 43754869
Alignment:
Q  88 atcaaaacattctgaattgccacatcaattaatgattttattttatgtgggccaaaca 145  Q
    ||||||||||||||||||  ||| ||||||||| |||||| |||||||| | ||||||    
T  43754812 atcaaaacattctgaattatcacgtcaattaattattttaatttatgtgtgtcaaaca 43754869  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 88 - 155
Target Start/End: Complemental strand, 34816716 - 34816649
Alignment:
Q  88 atcaaaacattctgaattgccacatcaattaatgattttattttatgtgggccaaacaagtcaattca 155  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||  |||||| | |||||||    
T  34816716 atcaaaacattctgaattgccacatcaattaatgattttaatttatgtggatcaaacatggcaattca 34816649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 88 - 137
Target Start/End: Complemental strand, 51460212 - 51460163
Alignment:
Q  88 atcaaaacattctgaattgccacatcaattaatgattttattttatgtgg 137  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  51460212 atcaaaacattctgaattgtcacatcaattaatgattttaatttatgtgg 51460163  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 144
Target Start/End: Original strand, 37479408 - 37479464
Alignment:
Q  88 atcaaaacattctgaattgccacatcaattaatgattttattttatgtgggccaaac 144  Q
    |||||||| |||||||| |||||||||||||||| ||||| |||| || ||||||||    
T  37479408 atcaaaactttctgaatcgccacatcaattaatgtttttaatttaagtaggccaaac 37479464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 127
Target Start/End: Complemental strand, 26132102 - 26132063
Alignment:
Q  88 atcaaaacattctgaattgccacatcaattaatgatttta 127  Q
    ||||||| |||||||||||||| |||||||||||||||||    
T  26132102 atcaaaatattctgaattgccagatcaattaatgatttta 26132063  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 5207614 - 5207669
Alignment:
Q  88 atcaaaacattctgaattgccacatcaattaatgattttattttatgtgggccaaa 143  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  5207614 atcaaaacattctgaattgccacatcaattaatgattttaatttatgtgagccaaa 5207669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 144
Target Start/End: Original strand, 41910051 - 41910107
Alignment:
Q  88 atcaaaacattctgaattgccacatcaattaatgattttattttatgtgggccaaac 144  Q
    ||||||||||| ||||||| ||||||| |||||||||||| ||||||||| ||||||    
T  41910051 atcaaaacattttgaattgtcacatcagttaatgattttaatttatgtggcccaaac 41910107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 162
Target Start/End: Complemental strand, 24855205 - 24855131
Alignment:
Q  88 atcaaaacattctgaattgccacatcaattaatgattttattttatgtgggccaaacaagtcaattcaaaatgtt 162  Q
    ||||||| ||||| ||||| ||||||||||||||||||||  |||||||| |||| || | ||||||| ||||||    
T  24855205 atcaaaatattctaaattgtcacatcaattaatgattttaacttatgtggaccaaccatggcaattcagaatgtt 24855131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 127
Target Start/End: Complemental strand, 7423341 - 7423302
Alignment:
Q  88 atcaaaacattctgaattgccacatcaattaatgatttta 127  Q
    ||||||||||||||||| ||||||| ||||||||||||||    
T  7423341 atcaaaacattctgaatcgccacattaattaatgatttta 7423302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 138
Target Start/End: Original strand, 11330955 - 11331005
Alignment:
Q  88 atcaaaacattctgaattgccacatcaattaatgattttattttatgtggg 138  Q
    ||||||| ||| ||||||| || ||||||||||||||||| ||||||||||    
T  11330955 atcaaaatattttgaattgtcatatcaattaatgattttaatttatgtggg 11331005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 138
Target Start/End: Original strand, 11488976 - 11489026
Alignment:
Q  88 atcaaaacattctgaattgccacatcaattaatgattttattttatgtggg 138  Q
    ||||||| ||| ||||||| || ||||||||||||||||| ||||||||||    
T  11488976 atcaaaatattttgaattgtcatatcaattaatgattttaatttatgtggg 11489026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 120
Target Start/End: Complemental strand, 22771429 - 22771399
Alignment:
Q  90 caaaacattctgaattgccacatcaattaat 120  Q
    |||||||||||||||||||||||||||||||    
T  22771429 caaaacattctgaattgccacatcaattaat 22771399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 120
Target Start/End: Complemental strand, 23077223 - 23077193
Alignment:
Q  90 caaaacattctgaattgccacatcaattaat 120  Q
    |||||||||||||||||||||||||||||||    
T  23077223 caaaacattctgaattgccacatcaattaat 23077193  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 88 - 162
Target Start/End: Complemental strand, 44184051 - 44183977
Alignment:
Q  88 atcaaaacattctgaattgccacatcaattaatgattttattttatgtgggccaaacaagtcaattcaaaatgtt 162  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||  | ||||||| ||||||    
T  44184051 atcaaaacattctgaattgtcacatcaattaatgattttaatttatgtggaccaaacgtgacaattcagaatgtt 44183977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 136
Target Start/End: Original strand, 22794849 - 22794897
Alignment:
Q  88 atcaaaacattctgaattgccacatcaattaatgattttattttatgtg 136  Q
    ||||||||||||||||| |||| ||||||||||||||| | ||||||||    
T  22794849 atcaaaacattctgaatcgccatatcaattaatgatttcaatttatgtg 22794897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 136
Target Start/End: Complemental strand, 37257682 - 37257634
Alignment:
Q  88 atcaaaacattctgaattgccacatcaattaatgattttattttatgtg 136  Q
    |||||||||||| ||||  ||||||||||||||| ||||| ||||||||    
T  37257682 atcaaaacattcagaatccccacatcaattaatgtttttaatttatgtg 37257634  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 19636455 - 19636510
Alignment:
Q  88 atcaaaacattctgaattgccacatcaattaatgattttattttatgtgggccaaa 143  Q
    |||||||||||  |||| |||||||||||||||||||||| |||||||||||||||    
T  19636455 atcaaaacatttagaatcgccacatcaattaatgattttaatttatgtgggccaaa 19636510  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 159
Target Start/End: Complemental strand, 13210325 - 13210254
Alignment:
Q  88 atcaaaacattctgaattgccacatcaattaatgattttattttatgtgggccaaacaagtcaattcaaaat 159  Q
    ||||||||||| | ||| |||| |||||||||| |||||| |||||||||| |||||  | |||||||||||    
T  13210325 atcaaaacattttcaatcgccatatcaattaattattttaatttatgtgggtcaaacgtggcaattcaaaat 13210254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 120
Target Start/End: Complemental strand, 19255023 - 19254991
Alignment:
Q  88 atcaaaacattctgaattgccacatcaattaat 120  Q
    |||||||||||| ||||||||||||||||||||    
T  19255023 atcaaaacattcagaattgccacatcaattaat 19254991  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 162
Target Start/End: Original strand, 24229427 - 24229501
Alignment:
Q  88 atcaaaacattctgaattgccacatcaattaatgattttattttatgtgggccaaacaagtcaattcaaaatgtt 162  Q
    ||||||| ||||||||||| ||  |||||||||||||||| ||||||||||| ||||| |  |||||||||||||    
T  24229427 atcaaaatattctgaattgtcatttcaattaatgattttaatttatgtgggctaaacatggtaattcaaaatgtt 24229501  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 145
Target Start/End: Complemental strand, 9035422 - 9035377
Alignment:
Q  100 tgaattgccacatcaattaatgattttattttatgtgggccaaaca 145  Q
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T  9035422 tgaattgccacatcaattaatgattttaatttatgtgtgccaaaca 9035377  T

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