View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18886_high_11 (Length: 373)
Name: NF18886_high_11
Description: NF18886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18886_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 13 - 335
Target Start/End: Complemental strand, 17347818 - 17347499
Alignment:
| Q |
13 |
aaggccatatgaaattgttttgtgacaataaatcgactattagtattgcacataatcttgttcagcatgataaaataaaacagattgagattgacattca |
112 |
Q |
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||||||||||||| ||||| ||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
17347818 |
aaggccatatgaagttgtt--gtgacaacaaatcgactattagtattgtacataatctttttcagcatgataaaataaaacacattgagattgacattca |
17347721 |
T |
|
| Q |
113 |
ttccatcaaagagaagttgaataatgtattgataactacaacatacatttcttctcggcataagctggaagatgtgttggtgaaaggcttatgaagcgaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
17347720 |
ttccatcaaagagaagttgaataatgtattgataactacaacatacatttcttctcggcataagctagaagatgtgttagtgaaaggcttatgaagcgaa |
17347621 |
T |
|
| Q |
213 |
agattcagtcaacttacttgcaagctagaaataataaatattcatttactagtttgagggtgaatgttgtnnnnnnntgtaattttaatagtaatttata |
312 |
Q |
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| T |
17347620 |
agattcaatcaacttacttgcaagctagaaataataaatattcatttactagtttgaggg-gagtgttgtaaaaaaatgtaattttaatagtaatttata |
17347522 |
T |
|
| Q |
313 |
tttgaccaattagtctattaatc |
335 |
Q |
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||||||||||||||||||||||| |
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| T |
17347521 |
tttgaccaattagtctattaatc |
17347499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 38507000 - 38506964
Alignment:
| Q |
32 |
ttgtgacaataaatcgactattagtattgcacataat |
68 |
Q |
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| T |
38507000 |
ttgtgacaataaatcgactattagtattgctcataat |
38506964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 161
Target Start/End: Original strand, 27471651 - 27471797
Alignment:
| Q |
15 |
ggccatatgaaattgttttgtgacaataaatcgactattagtattgcacataatcttgttcagcatgataaaataaaacagattgagattgacattcatt |
114 |
Q |
| |
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|||| |||||| |||||||||||| | ||||| | |||| |||||||||||||||||||||| |||| | | |||||| |||||||||||| |||| |
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| T |
27471651 |
ggccctatgaagttgttttgtgactacaaatcatccattaatattgcacataatcttgttcagaatgaaaggacaaaacacattgagattgaccggcatt |
27471750 |
T |
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| Q |
115 |
ccatcaaagagaagttgaataatgtattgataactacaacatacatt |
161 |
Q |
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||||||||| |||||| |||||| || |||||||||||| |||||| |
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| T |
27471751 |
tcatcaaagataagttggataatggatagataactacaacctacatt |
27471797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 40747593 - 40747655
Alignment:
| Q |
20 |
tatgaaattgttttgtgacaataaatcgactattagtattgcacataatcttgttcagcatga |
82 |
Q |
| |
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|||||||||||||||| ||||||||||| |||||||||||||| | |||||| |||| ||||| |
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| T |
40747593 |
tatgaaattgttttgtaacaataaatcggctattagtattgcatacaatctttttcaacatga |
40747655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 39 - 238
Target Start/End: Complemental strand, 27913966 - 27913765
Alignment:
| Q |
39 |
aataaatcgactattagtattgcacataatcttgttcagcatgataaaataa--aacagattgagattgacattcattccatcaaagagaagttgaataa |
136 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||| | ||| | | || |||| ||||||||| || |||| ||||||||| || || |||| |
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| T |
27913966 |
aataaatcgactattagtattgcagataatcttgttcaacgtgacatgacaattaacacattgagatttaccaacatttcatcaaagaaaatatggataa |
27913867 |
T |
|
| Q |
137 |
tgtattgataactacaacatacatttcttctcggcataagctggaagatgtgttggtgaaaggcttatgaagcgaaagattcagtcaacttacttgcaag |
236 |
Q |
| |
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|| | ||||||| ||||| |||||| ||| | ||||| | ||| |||||||||| ||| ||||||| || ||| |||||| |||||||||||||| |
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| T |
27913866 |
tgaactgataacgacaacgtacattccttatgggcatcatctgaaagatgtgttaaggaagggcttatcaacagaacgattcaactaacttacttgcaag |
27913767 |
T |
|
| Q |
237 |
ct |
238 |
Q |
| |
|
|| |
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|
| T |
27913766 |
ct |
27913765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 7707665 - 7707745
Alignment:
| Q |
20 |
tatgaaattgttttgtgacaataaatcgactattagtattgcacataatcttgttcagcatgataaaataaaacagattga |
100 |
Q |
| |
|
|||||| |||||||||| |||||||||| | ||||||||||| | ||||||||||||||||| || | |||||| ||||| |
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| T |
7707665 |
tatgaagttgttttgtggcaataaatcggccattagtattgcttaaaatcttgttcagcatgacaagacaaaacacattga |
7707745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 36495857 - 36495807
Alignment:
| Q |
32 |
ttgtgacaataaatcgactattagtattgcacataatcttgttcagcatga |
82 |
Q |
| |
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||||||||||||||| || |||||||||| |||||||||||||||||||| |
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| T |
36495857 |
ttgtgacaataaatcagctcttagtattgcgcataatcttgttcagcatga |
36495807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 14302594 - 14302642
Alignment:
| Q |
21 |
atgaaattgttttgtgacaataaatcgactattagtattgcacataatc |
69 |
Q |
| |
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||||| ||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
14302594 |
atgaagttgttttgtgacaataaatcgaccattagtattgcgcataatc |
14302642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 69
Target Start/End: Complemental strand, 22090605 - 22090568
Alignment:
| Q |
32 |
ttgtgacaataaatcgactattagtattgcacataatc |
69 |
Q |
| |
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||||||||||||||||||||| |||||||| ||||||| |
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| T |
22090605 |
ttgtgacaataaatcgactatcagtattgctcataatc |
22090568 |
T |
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