View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18886_high_19 (Length: 261)

Name: NF18886_high_19
Description: NF18886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18886_high_19
NF18886_high_19
[»] chr5 (2 HSPs)
chr5 (114-254)||(12845559-12845699)
chr5 (124-164)||(32267531-32267571)
[»] chr3 (1 HSPs)
chr3 (177-231)||(51120949-51121003)
[»] chr4 (3 HSPs)
chr4 (181-231)||(12123430-12123480)
chr4 (124-164)||(1519145-1519185)
chr4 (124-164)||(7307916-7307956)
[»] chr8 (2 HSPs)
chr8 (124-164)||(17636404-17636444)
chr8 (124-164)||(27922564-27922604)
[»] chr1 (1 HSPs)
chr1 (124-164)||(52082637-52082677)


Alignment Details
Target: chr5 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 114 - 254
Target Start/End: Complemental strand, 12845699 - 12845559
Alignment:
Q  114 gctacttgagatgaactttgaagtttccaaattagaggtattgaacttgtcccggtccgtgactgatgatgaagcactatatgcaatctcaaagagttgt 213  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  12845699 gctacttgagatgaaccttgaagttcccaaattagaggtattgaacttgtcccggtccgcgaccgatgatgaagcactatatgcaatctcaaagagttgt 12845600  T
Q  214 cgtggtctattgcaattggacctggaaagtggtgatgatgt 254  Q
     ||||||||||||||||||||||||||| | || |||||||    
T  12845599 tgtggtctattgcaattggacctggaaaattgtaatgatgt 12845559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 32267571 - 32267531
Alignment:
Q  124 atgaactttgaagtttccaaattagaggtattgaacttgtc 164  Q
    ||||||||||||||| ||||||| |||||||||||||||||    
T  32267571 atgaactttgaagttcccaaattggaggtattgaacttgtc 32267531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 51120949 - 51121003
Alignment:
Q  177 tgatgatgaagcactatatgcaatctcaaagagttgtcgtggtctattgcaattg 231  Q
    ||||||||||  |||||||| ||||||||||||||||||||| || |||||||||    
T  51120949 tgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaattg 51121003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 231
Target Start/End: Original strand, 12123430 - 12123480
Alignment:
Q  181 gatgaagcactatatgcaatctcaaagagttgtcgtggtctattgcaattg 231  Q
    ||||||||||| ||||||||| |||| ||||||||||| || |||||||||    
T  12123430 gatgaagcactttatgcaatcccaaaaagttgtcgtgggcttttgcaattg 12123480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 164
Target Start/End: Original strand, 1519145 - 1519185
Alignment:
Q  124 atgaactttgaagtttccaaattagaggtattgaacttgtc 164  Q
    ||||||||||||||| ||||| ||||||| |||||||||||    
T  1519145 atgaactttgaagttcccaaactagaggtgttgaacttgtc 1519185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 7307956 - 7307916
Alignment:
Q  124 atgaactttgaagtttccaaattagaggtattgaacttgtc 164  Q
    ||||||||| ||||| ||||||| |||||||||||||||||    
T  7307956 atgaactttaaagttcccaaattggaggtattgaacttgtc 7307916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 164
Target Start/End: Original strand, 17636404 - 17636444
Alignment:
Q  124 atgaactttgaagtttccaaattagaggtattgaacttgtc 164  Q
    ||||||||||||||| ||||||| ||||| |||||||||||    
T  17636404 atgaactttgaagttcccaaattggaggtgttgaacttgtc 17636444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 27922604 - 27922564
Alignment:
Q  124 atgaactttgaagtttccaaattagaggtattgaacttgtc 164  Q
    ||||||||||||||| ||||||| ||||| |||||||||||    
T  27922604 atgaactttgaagttcccaaattggaggtgttgaacttgtc 27922564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 52082677 - 52082637
Alignment:
Q  124 atgaactttgaagtttccaaattagaggtattgaacttgtc 164  Q
    ||||||||| ||||||||||||| ||||| |||||||||||    
T  52082677 atgaactttcaagtttccaaattggaggtgttgaacttgtc 52082637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University