View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18886_high_20 (Length: 260)
Name: NF18886_high_20
Description: NF18886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18886_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-138; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 37360446 - 37360697
Alignment:
| Q |
1 |
caagaaaggcgttgtggatggatgacaaatggtttcatgagtgtaaatacaacgttaggagccgggaaagcatttttgagatcccttcatgagcagtatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37360446 |
caagaaaggcgttgtggatggatgacaaatggtttcatgagtgtaaatacaacgttaggagccgggaaagcatttttgagatcccttcatgagcagtatg |
37360545 |
T |
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| Q |
101 |
ctgcttggggtgttgatcttggtactcgcacaactaactaactgtctcaacatttttatcatgttattgacaacaatcatgatgatttgaaatctataaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
37360546 |
ctgcttggggtgttgatcttggtactcgcacaactaactaactgtctcaacatttttatcatgttattgacaacaatcatgatgatttgaaatctacaaa |
37360645 |
T |
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| Q |
201 |
gtatttatttgtaattgccttatcatgttatatacacggttctgcctatgct |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37360646 |
gtatttatttgtaattgccttatcatgttatatacacggttctgcctatgct |
37360697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 37367616 - 37367365
Alignment:
| Q |
1 |
caagaaaggcgttgtggatggatgacaaatggtttcatgagtgtaaatacaacgttaggagccgggaaagcatttttgagatcccttcatgagcagtatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37367616 |
caagaaaggcgttgtggatggatgacaaatggtttcatgagtgtaaatacaacgttaggagccgggaaagcatttttgagatcccttcatgagcagtatg |
37367517 |
T |
|
| Q |
101 |
ctgcttggggtgttgatcttggtactcgcacaactaactaactgtctcaacatttttatcatgttattgacaacaatcatgatgatttgaaatctataaa |
200 |
Q |
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| T |
37367516 |
ctgcttggggtgttgatcttggtactcgcacaactaactaactgtctcaacatttttatcatgttattgacaacaatcatgatgatttgaaatctaaaaa |
37367417 |
T |
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| Q |
201 |
gtatttatttgtaattgccttatcatgttatatacacggttctgcctatgct |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37367416 |
gtatttatttgtaattgccttatcatgttatatacacggttctgcctatgct |
37367365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 37382602 - 37382789
Alignment:
| Q |
1 |
caagaaaggcgttgtggatggatgacaaatggtttcatgagtgtaaatacaacgttaggagccgggaaagcatttttgagatcccttcatgagcagtatg |
100 |
Q |
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|||||||||||||||| ||||||| | ||||||||||||||||||||||||| ||||||||| || | ||| ||||||||||| ||| ||| ||||||| |
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| T |
37382602 |
caagaaaggcgttgtgcatggatgtctaatggtttcatgagtgtaaatacaaagttaggagcaggaagagcttttttgagatctctttatgcacagtatg |
37382701 |
T |
|
| Q |
101 |
ctgcttggggtgttgatcttggtactcgcacaactaactaactgtctcaacatttttatcatgttattgacaacaatcatgatgattt |
188 |
Q |
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|||||||||||||||||||||||||| |||| ||||||| |||||| ||||||||||||||| | ||||||||||||||||||||||| |
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| T |
37382702 |
ctgcttggggtgttgatcttggtactggcactactaacttactgtcacaacatttttatcatatcattgacaacaatcatgatgattt |
37382789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 5 - 162
Target Start/End: Original strand, 37375267 - 37375424
Alignment:
| Q |
5 |
aaaggcgttgtggatggatgacaaatggtttcatgagtgtaaatacaacgttaggagccgggaaagcatttttgagatcccttcatgagcagtatgctgc |
104 |
Q |
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||||||||||| ||||||| | ||||||||||||||||||||||||| ||||||||| |||| ||| ||||||||||| |||||||||||||||||||| |
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| T |
37375267 |
aaaggcgttgttcatggatgtctaatggtttcatgagtgtaaatacaaggttaggagcagggagagcttttttgagatctcttcatgagcagtatgctgc |
37375366 |
T |
|
| Q |
105 |
ttggggtgttgatcttggtactcgcacaactaactaactgtctcaacatttttatcat |
162 |
Q |
| |
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|||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||| |
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| T |
37375367 |
ttggggtgttgatcttggtactggcactactaacttactgtctcaacatttttatcat |
37375424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 37386450 - 37386342
Alignment:
| Q |
18 |
atggatgacaaatggtttcatgagtgtaaatacaacgttaggagccgggaaagcatttttgagatcccttcatgagcagtatgctgctt-ggggtgttga |
116 |
Q |
| |
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||||||| ||| ||||||||||| |||||| |||||||||| || |||| ||| ||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
37386450 |
atggatgcaaaacggtttcatgagagtaaatgcaacgttaggtgcagggagagcttttttgagatccctttatgagcagtatgctgcttgggggtgttga |
37386351 |
T |
|
| Q |
117 |
tcttggtac |
125 |
Q |
| |
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||||||||| |
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| T |
37386350 |
tcttggtac |
37386342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 12 - 125
Target Start/End: Complemental strand, 41229968 - 41229855
Alignment:
| Q |
12 |
ttgtggatggatgacaaatggtttcatgagtgtaaatacaacgttaggagccgggaaagcatttttgagatcccttcatgagcagtatgctgcttggggt |
111 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||| ||||| || |||| ||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
41229968 |
ttgtggatggatgcagaatggtttcatgagtgtagatacaacattaggggcagggagagcgtttttgagatccctttatgagcagtatgctgcttggggt |
41229869 |
T |
|
| Q |
112 |
gttgatcttggtac |
125 |
Q |
| |
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|||||||||||||| |
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| T |
41229868 |
gttgatcttggtac |
41229855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 126
Target Start/End: Original strand, 39243808 - 39243922
Alignment:
| Q |
12 |
ttgtggatggatgacaaatggtttcatgagtgtaaatacaacgttaggagccgggaaagcatttttgagatcccttcatgagcagtatgctgcttggggt |
111 |
Q |
| |
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|||||| |||||||| |||||||||||||||||||||| ||||| || || || ||||| |||||||| |||||| ||| ||||||||||| |||||| |
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| T |
39243808 |
ttgtggctggatgactcatggtttcatgagtgtaaatactacgttgggtgctggcaaagcctttttgaggtccctttatgtgcagtatgctgaatggggt |
39243907 |
T |
|
| Q |
112 |
gttgatcttggtact |
126 |
Q |
| |
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|||||| |||||||| |
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| T |
39243908 |
gttgattttggtact |
39243922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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