View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18886_high_4 (Length: 460)
Name: NF18886_high_4
Description: NF18886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18886_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Complemental strand, 22776987 - 22776546
Alignment:
| Q |
1 |
atgaagaagaattgtctattgatgatttatctcaaagacaagacacagaaatcaaacacattgtttttgggatagcggcttcatcaaatttgtggaacat |
100 |
Q |
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| T |
22776987 |
atgaagaagaattgtctattgatgatttatctcaaagacaagacacagagatcaaacacattgtttttgggatagcggcttcatcaaatttgtggaacat |
22776888 |
T |
|
| Q |
101 |
aagaaaggaatacattaaggtatggtggaaacctaatgaaacaagaggggtggtgtggatggatcaaagagtgaagacacgtgatgatgaagatttacca |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22776887 |
aagaaaggaatacattaaggtatggtggaaacataatgaaacaagaggggtggtgtggatggatcaaagagtgaagacacgtgatgatgaagatttacca |
22776788 |
T |
|
| Q |
201 |
gatattcaaatttcgggggacactagtagatttaagtatacaaatcgtcagggacagagatctgctttaaggatttcaaggattgtgacagagacattga |
300 |
Q |
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| T |
22776787 |
gatattcaaatttcgggggacactagtagatttaagtatacgaatcgtcagggacagagatctgctttaaggatttcaaggattgtgacagagacattga |
22776688 |
T |
|
| Q |
301 |
aacttgggttggaggatgtgagatggttcatgatgggagatgatgatactgtatttatggttgataatgtggttagagttctttcaaaatatgatcatac |
400 |
Q |
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| T |
22776687 |
aacttgggttggaggatgtgagatggttcatgatgggagatgatgatactgtgtttatggttgataatgtggttagagttctttcaaaatatgatcatac |
22776588 |
T |
|
| Q |
401 |
tcaattttattatgttggaagctcctctgagagtcatgttca |
442 |
Q |
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| T |
22776587 |
tcaattttattatgttggaagctcctctgagagtcatgttca |
22776546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 121; Significance: 8e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 31 - 439
Target Start/End: Complemental strand, 40945571 - 40945163
Alignment:
| Q |
31 |
ctcaaagacaagacacagaaatcaaacacattgtttttgggatagcggcttcatcaaatttgtggaacataagaaaggaatacattaaggtatggtggaa |
130 |
Q |
| |
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||||||||||||| || || | ||||||||||||||||||||||| |||||||||||||| ||||| | |||||| |||||||| || ||||||||| |
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| T |
40945571 |
ctcaaagacaagatactgagctgaaacacattgtttttgggatagctgcttcatcaaatttatggaatacaagaaaagaatacatcaaaatatggtggag |
40945472 |
T |
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| Q |
131 |
acctaatgaaacaagaggggtggtgtggatggatcaaagagtgaagacacgtgatgatgaagatttaccagatattcaaatttcgggggacactagtaga |
230 |
Q |
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||| || |||||||||| || || ||| | ||||||||||||| |||| | |||| ||||| ||||||| ||| || | |||||| || | |
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| T |
40945471 |
accaaaacaaacaagaggtgttgtttggttagatcaaagagtgagtacacaaaggaacgaagggttacctgatattcgaatctcagatgacacttctaaa |
40945372 |
T |
|
| Q |
231 |
tttaagtatacaaatcgtcagggacagagatctgctttaaggatttcaaggattgtgacagagacattgaaacttgggttggaggatgtgagatggttca |
330 |
Q |
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||| |||||||||||| |||||||| || || || || ||||| |||||| ||||||||||||||||||| ||||| ||| | ||||| |||||||| |
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| T |
40945371 |
tttcggtatacaaatcgacagggacaaaggtcagcattgaggatatcaagggttgtgacagagacattgaagcttggattgaaagatgtaagatggtttg |
40945272 |
T |
|
| Q |
331 |
tgatgggagatgatgatactgtatttatggttgataatgtggttagagttctttcaaaatatgatcatactcaattttattatgttggaagctcctctga |
430 |
Q |
| |
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|||||||||||||||||||||| ||| | ||||||||||| |||||| |||||||||| ||||| |||| || |||||||||||||| || || ||||| |
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| T |
40945271 |
tgatgggagatgatgatactgtttttgttgttgataatgttgttagaattctttcaaagtatgaccatagacatttttattatgttggtagttcttctga |
40945172 |
T |
|
| Q |
431 |
gagtcatgt |
439 |
Q |
| |
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||||||||| |
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| T |
40945171 |
gagtcatgt |
40945163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 442
Target Start/End: Original strand, 5180527 - 5180575
Alignment:
| Q |
394 |
atcatactcaattttattatgttggaagctcctctgagagtcatgttca |
442 |
Q |
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|||||| ||||||||| || || |||| ||||||||||||||||||||| |
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| T |
5180527 |
atcataatcaattttactacgtcggaaactcctctgagagtcatgttca |
5180575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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