View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18886_high_5 (Length: 451)
Name: NF18886_high_5
Description: NF18886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18886_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 9 - 439
Target Start/End: Complemental strand, 28925713 - 28925283
Alignment:
| Q |
9 |
acaatgaggcattcaaatttcgaaagcacggaaaattgaattcaactataaaatcttgtcagaatgtacgttcagaagagctgccaagtggatttgcagc |
108 |
Q |
| |
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||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
28925713 |
acaatgaggcattcaaatttcgaaagcacagaaatttgaattcaactataaaatcttgtcagaatgtacgttcgaaagagctgccaagtggatttgcagc |
28925614 |
T |
|
| Q |
109 |
tatagttagttcaaacataaaacttgtctacctgaagaggagcttaattgaggagcttttgaagcaaccagaaaccgatggcaaagtgttgggaagttat |
208 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28925613 |
tatagttagttcaaacataaaacttgtctacctgaagaggagcttaattgaggagcttttgaagcaaccagaaaccgatggcaaagtgttgggaagttat |
28925514 |
T |
|
| Q |
209 |
gttagaaccaaatccgacccaaatgactatttacagaagaattctcatctgctcgtacaagtcaaaggtaatcttggtcttcgcttaaagttactggtct |
308 |
Q |
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||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
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| T |
28925513 |
gttagaatcaaatccgacccaaatgactatttacaaaagaattctcatctgctcgtacaagtcaaaggtactcttggtctttgcttaaagttactggtct |
28925414 |
T |
|
| Q |
309 |
gaaaaaataaaccatacaattttttattaaaagttaagtagttagttttgctggcttcagattttcaagtacagtaccgatactatcatattctcatttt |
408 |
Q |
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|||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28925413 |
gaaaaaataaaccatacaattttttattaacagctaagtagttagttttgctagcttcagattttcaagtacagtaccgatactatcatattctcatttt |
28925314 |
T |
|
| Q |
409 |
tcttggtcttatttctaaaatcttgtttttg |
439 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
28925313 |
tcttggtcttatttctaaaatcttgtttttg |
28925283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 11 - 360
Target Start/End: Complemental strand, 28916476 - 28916123
Alignment:
| Q |
11 |
aatgaggcattcaaatttcgaaagcacggaaaattgaattcaactataaaatcttgtcagaatgtacgttcagaagagctgccaagtggatttgcagcta |
110 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
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| T |
28916476 |
aatgaggcattcaaatttcgaaagcacagaaatttgaattcaactataaaatcttgtcagaatgtacgttccaaagagctgccaagtggatttgcaggaa |
28916377 |
T |
|
| Q |
111 |
tagttagttcaaacataaaacttgtctacctgaagaggagcttaattgaggagcttttgaagcaaccagaaacc---gatggcaaagtgttgggaagtta |
207 |
Q |
| |
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|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||| |
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| T |
28916376 |
taattagttcaaacataaaacttgtctacttgaagaggagcttaattgaggagcttttgaagcaaccagatacctttgctggcaaagtgttgggaagtta |
28916277 |
T |
|
| Q |
208 |
tgttagaaccaaatccgacccaaatgactatttacagaagaattctcatctgctcgtacaagtcaaaggtaatcttggtcttcgctt-aaagttactggt |
306 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| | ||||||||||||||||||||| ||| |||||||| |
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| T |
28916276 |
tgttagaaccaaatccgacccaaatgactatttacagaagaattctcatctgcttttagaagtaacaggtaatcttggtcttcgcttaaaacttactggt |
28916177 |
T |
|
| Q |
307 |
ctgaaaaaataaaccatacaattttttattaaaagttaagtagttagttttgct |
360 |
Q |
| |
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|||||||||| | ||||||| |||||||||||||| |||||||||||||||| |
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| T |
28916176 |
ctgaaaaaatctagcatacaactttttattaaaagtacagtagttagttttgct |
28916123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 329
Target Start/End: Complemental strand, 28902055 - 28901740
Alignment:
| Q |
17 |
gcattcaaatttcgaaagcacggaaaattgaattcaactataaaatcttgtcagaatgtacgttcagaagagctgccaagtggatttgcagctatagtta |
116 |
Q |
| |
|
||||||||||||| |||||| ||||| ||||||||||||| |||| ||||||||||| ||| || ||||||| |||||||| ||||||||||||| ||| |
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| T |
28902055 |
gcattcaaatttccaaagcagggaaatttgaattcaactacaaaaccttgtcagaatatactctctgaagagcagccaagtgtatttgcagctataatta |
28901956 |
T |
|
| Q |
117 |
gttcaaacataaaacttgtctacctgaagaggagcttaattgaggagcttttgaagcaaccagaaacc---gatggcaaagtgttgggaagttatgttag |
213 |
Q |
| |
|
||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
28901955 |
attcaaacatgaaacttgtctacttgaagagaagcttaattgaggagcttttgaagcaaccagaaacctttgatggcaaagtgttgggaagttatgttag |
28901856 |
T |
|
| Q |
214 |
aaccaaatccgacccaaatgactatttacagaagaattctcatctgctcgtacaagtcaaaggtaatcttggtcttcgcttaaagttactggtctgaaaa |
313 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
28901855 |
aaccaaatccgacccaaatgactatttacagaagaattctcatctgctcttacaagtcataggtaatcttggttttcgcttaaagttactggtctgaaaa |
28901756 |
T |
|
| Q |
314 |
aataaaccatacaatt |
329 |
Q |
| |
|
|||||||||||||||| |
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| T |
28901755 |
aataaaccatacaatt |
28901740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 11 - 289
Target Start/End: Complemental strand, 28892107 - 28891826
Alignment:
| Q |
11 |
aatgaggcattcaaatttcgaaagcacggaaaattgaattcaactataaaatcttgtcagaatgtacgttcagaagagctgccaagtggatttgcagcta |
110 |
Q |
| |
|
||||||||||||||||||| |||||| |||| ||||||||||||| |||| ||||||||||| ||| || |||||| |||||||||||||||||||| |
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|
| T |
28892107 |
aatgaggcattcaaatttccaaagcagagaaatttgaattcaactacaaaaccttgtcagaatctactctctcaagagcagccaagtggatttgcagcta |
28892008 |
T |
|
| Q |
111 |
tagttagttcaaacataaaacttgtctacctgaagaggagcttaattgaggagcttttgaagcaaccagaaacc---gatggcaaagtgttgggaagtta |
207 |
Q |
| |
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|| ||| |||||||||||||||||||||| | | ||||| ||| ||||| |||||||| ||| | ||||||||| |||| ||||||||||||||||| |
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| T |
28892007 |
taattaattcaaacataaaacttgtctacttaaggaggaccttgattgatgagcttttaaagaagccagaaacctttgatgtcaaagtgttgggaagttt |
28891908 |
T |
|
| Q |
208 |
tgttagaaccaaatccgacccaaatgactatttacagaagaattctcatctgctcgtacaagtcaaaggtaatcttggtctt |
289 |
Q |
| |
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|||||||| ||||||||||| |||||| ||||||||||| ||||||||||||||||||||||| | |||||||||| ||||| |
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| T |
28891907 |
tgttagaatcaaatccgaccgaaatgattatttacagaaaaattctcatctgctcgtacaagtaataggtaatctttgtctt |
28891826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 15 - 308
Target Start/End: Complemental strand, 28935303 - 28935006
Alignment:
| Q |
15 |
aggcattcaaatttcgaaagcacggaaaattgaattcaactataaaatcttgtcagaatgtacgttcagaagagctgccaagtggatttgcagctatagt |
114 |
Q |
| |
|
||||||||||||||| |||||| |||| || || || ||| |||||||||||||| || | ||| ||| | || |||||||| | |||||||||| | |
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| T |
28935303 |
aggcattcaaatttccaaagcagagaaatttaaactcggctacaaaatcttgtcagagtgcagtttctgaaaaacttccaagtggctatgcagctataat |
28935204 |
T |
|
| Q |
115 |
tagttcaaacataaaacttgtctacctgaagaggagcttaattgaggagcttttgaagcaaccagaaacc---gatggcaaagtgttgggaagttatgtt |
211 |
Q |
| |
|
|||||||||| |||| ||||||||| | ||||| | |||||| ||||||||| |||||||||||||||| |||| ||||||||||||| ||| |||| |
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| T |
28935203 |
tagttcaaacctaaagcttgtctacttaaagagaaccttaatcgaggagcttcggaagcaaccagaaacctttgatgacaaagtgttgggatgttttgtt |
28935104 |
T |
|
| Q |
212 |
agaaccaaatccgaccc-aaatgactatttacagaagaattctcatctgctcgtacaagtcaaaggtaatcttggtcttcgcttaaagttactggtct |
308 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||| ||||| ||||||||||| | ||||||||||| || || || ||||||||||||| |
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|
| T |
28935103 |
agaaccaaaaccgaccccaaatgactatttacagaagaattcccatcttctcgtacaagtaataggtaatcttgatcatcactagaagttactggtct |
28935006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 364 - 439
Target Start/End: Complemental strand, 28901730 - 28901655
Alignment:
| Q |
364 |
ttcagattttcaagtacagtaccgatactatcatattctcatttttcttggtcttatttctaaaatcttgtttttg |
439 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
28901730 |
ttcagattttcaagtacagtactgatactattgtattctcatttttcttggtctcatttctaaaatcttgtttttg |
28901655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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