View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18886_low_1 (Length: 668)

Name: NF18886_low_1
Description: NF18886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18886_low_1
NF18886_low_1
[»] chr3 (1 HSPs)
chr3 (16-655)||(38583528-38584167)


Alignment Details
Target: chr3 (Bit Score: 620; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 16 - 655
Target Start/End: Original strand, 38583528 - 38584167
Alignment:
Q  16 ataacattagtctaattatcatgataagataatactaattcaggtccaaattatattttaatttgtaaaaacaacctcatctgctggggagtgatatcag 115  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38583528 ataacattagtctaattatcatgataagatgatactaattcaggtccaaattatattttaatttgtaaaaacaacctcatctgctggggagtgatatcag 38583627  T
Q  116 tagttgagttacacttgaaggctcccccctgctttttgcttccagtgcggttgatgttcattgaaacctcttgcttctcggaatctgagtagctaaagga 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  38583628 tagttgagttacacttgaaggctcccccctgctttttgcttccagtgcggttgatgttcattgaaacctcttgcttctcggaatctgaatagctaaagga 38583727  T
Q  216 aactgcaagagaaaagtagctatgtttatgaatctttcataagtgtctcaaattaaattatactggaatctacattttgcaactaccacatatagcagtc 315  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  38583728 aactgcaagagaaaagtagctatgtttatgaatcttccataagtgtctcaaattaaattatactggaatctacattttgcaactaccatatatagcagtc 38583827  T
Q  316 ttcctaaagcaataacctatgttcggtattcatttaaatacaatttcccaattccatcacattcaaataacctatgccaaatccttacatgcatattcct 415  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38583828 ttcctaaagcaataacctatgttcggtattcattcaaatacaatttcccaattccatcacattcaaataacctatgccaaatccttacatgcatattcct 38583927  T
Q  416 caatcatcggtccatccactgcttcacacacacagaatagaagagtcttcaggtacttcttctgcaaggcatcgtaaacacctggaaaagaaatacaata 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38583928 caatcatcggtccatccactgcttcacacacacagaatagaagagtcttcaggtacttcttctgcaaggcatcgtaaacacctggaaaagaaatacaata 38584027  T
Q  516 agtcaaatcaaaacaagcaattaaaactcattttctataagttcaatcagataatatagcttaaacgtgcctttctccatccaatcaatcagtctccgag 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38584028 agtcaaatcaaaacaagcaattaaaactcattttctataagttcaatcagataatatagcttaaacgtgcctttctccatccaatcaatcagtctccgag 38584127  T
Q  616 actccgcatcgaccggtaaaagctttttgatcttcatctc 655  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  38584128 actccgcatcgaccggtaaaagctttttgatcttcatctc 38584167  T

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